ID: uc003ozg.3_intron_4_0_chr6_49412468_r.5p
GENE: (8)
chr6:49415183-49415432-


(4)
B-CELL 		(2)
BRAIN 		(2)
BREAST 		(7)
CELL-LINE 		(3)
HELA 		(6)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(3)
SKIN

Sense strand
CAATTGATAATACTTCAGTGCGAAACAGGCAGATTGAAAAACTTAAGAAGGTATTAATAGCTTGCTTTTTTTTTTTTTTTTAAGTATTTTCTGTGTTCTGGGCTCTGGCTAAGCTTTTAAACTGTCCTGCTTAAATTAATCCTTACAACAGCATGAGGTGTGTATTAATTTCCATCATTTCAAATGTAAGGGAACTAAAGATAAGGCATTGAGAAACTTGCTCAGGATAAATAGACAACCAGGACTCAGT
.....................................................((((.((((((((................((......))..............))).))))).))))..................................................................................................................................
..................................................51................................................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189783DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR189782
..........................................................AGCTTGCTTTTTTTTTTTTTTTTC........................................................................................................................................................................2435.000.0033.002.00-----------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTTCATG.....................................................................................................................................................................2728.000.0027.001.00-----------------------------
..........................................................AGCTTGCTTTTTTTTTTTTCATG.........................................................................................................................................................................2326.000.0025.001.00-----------------------------
..........................................................AGCTTGCTTTTTTTTTTTCATG..........................................................................................................................................................................2224.000.0022.002.00-----------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTCATG......................................................................................................................................................................2623.000.0022.001.00-----------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTCTTC......................................................................................................................................................................2619.000.0018.001.00-----------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTCATG.......................................................................................................................................................................2518.000.0017.001.00-----------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTTCTTC.....................................................................................................................................................................2715.000.0013.002.00-----------------------------
..........................................................AGCTTGCTTTTTTTTTTCATG...........................................................................................................................................................................2114.000.0013.001.00-----------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTTCTC......................................................................................................................................................................2610.000.009.001.00-----------------------------
..........................................................AGCTTGCTTTTTTTTTCATG............................................................................................................................................................................209.000.009.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTCTTC.......................................................................................................................................................................258.000.007.001.00-----------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTTCC.......................................................................................................................................................................258.000.008.00------------------------------
..........................................................AGCTTGCTTTTTTTTCATG.............................................................................................................................................................................195.000.005.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTTCAAG.....................................................................................................................................................................274.000.004.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTCTC.......................................................................................................................................................................254.000.004.00------------------------------
............................................................CTTGCTTTTTTTTTTTTTTCATG.......................................................................................................................................................................233.000.001.00-1.00-----1.00----------------------
............................................................CTTGCTTTTTTTTTTTTCATG.........................................................................................................................................................................213.000.00--3.00----------------------------
...........................GGCAGATTGAAAAACTTAAGAAGATCA....................................................................................................................................................................................................2713.002.00----3.00--------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTCTTT......................................................................................................................................................................263.000.003.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTTCTTT.....................................................................................................................................................................273.000.002.001.00-----------------------------
...........................GGCAGATTGAAAAACTTAAGAAG........................................................................................................................................................................................................2312.002.00--------------------------1.001.00---
..........................................................AGCTTGCTTTTTTTTTTTCAAG..........................................................................................................................................................................222.000.002.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTCCTC.......................................................................................................................................................................252.000.002.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTCC.........................................................................................................................................................................232.000.002.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTCAAG.......................................................................................................................................................................252.000.002.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTCTTC..........................................................................................................................................................................222.000.002.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTCTC..........................................................................................................................................................................222.000.002.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTCACG..........................................................................................................................................................................222.000.002.00------------------------------
.....................................................................................ATTTTCTGTGTTCTGGGCTCTGGC.............................................................................................................................................2411.001.00-1.00-----------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTACC.......................................................................................................................................................................251.000.001.00------------------------------
........................ACAGGCAGATTGAAAAACT...............................................................................................................................................................................................................1911.001.00---1.00---------------------------
..........................................................AGCTTGCTTTTTTTTTTTTCTCT.........................................................................................................................................................................231.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTCACG.......................................................................................................................................................................251.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTTCA.......................................................................................................................................................................251.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTTCAG......................................................................................................................................................................261.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTCTTT.......................................................................................................................................................................251.000.001.00------------------------------
.......TAATACTTCAGTGCGAAACAGGCAGA.........................................................................................................................................................................................................................2611.001.00----------1.00--------------------
..........................................................AGCTTGCTTTTTTTTTTTTGAG..........................................................................................................................................................................221.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTGATG...........................................................................................................................................................................211.000.001.00------------------------------
....................................................................................................................................................................................................AAAGATAAGGCATTGAGAAACTTGCTCA..........................2811.001.00----1.00--------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTTCAGG.....................................................................................................................................................................271.000.001.00------------------------------
.............................................................TTGCTTTTTTTTTTTTTTTTACAGT....................................................................................................................................................................251.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTCCCA......................................................................................................................................................................261.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTCAC.......................................................................................................................................................................251.000.001.00------------------------------
........................................................ATAGCTTGCTTTTTTTTTTTTTTTAAGC......................................................................................................................................................................281.000.00-1.00-----------------------------
..........................................................AGCTTGCTTTTTTTTTTTTCAGG.........................................................................................................................................................................231.000.001.00------------------------------
....................................................................................................................TTAAACTGTCCTGCTTAAATT.................................................................................................................2111.001.00---1.00---------------------------
...........................GGCAGATTGAAAAACTTAAGA..........................................................................................................................................................................................................2111.001.00---1.00---------------------------
......................AAACAGGCAGATTGAAAAACTTAAGAAG........................................................................................................................................................................................................2811.001.00----------------------1.00--------
..........................................................AGCTTGCTTTTTTTTTTTTTTTCACG......................................................................................................................................................................261.000.00-1.00-----------------------------
....................CGAAACAGGCAGATTGA.....................................................................................................................................................................................................................1711.001.00--------------------1.00----------
...........................GGCAGATTGAAAAACTTA.............................................................................................................................................................................................................1811.001.00------------------1.00------------
.....................................................................TTTTTTTTTTTTAAGTATTCCAG..............................................................................................................................................................231.000.00--1.00----------------------------
....................CGAAACAGGCAGATTGAAAAACT...............................................................................................................................................................................................................2311.001.00---------1.00---------------------
.............................................................TTGCTTTTTTTTTTTTTTTTATTG.....................................................................................................................................................................241.000.00-1.00-----------------------------
......................................................................................................................................................................................AATGTAAGGGAACTAAAGATAAGGCA..........................................2611.001.00---1.00---------------------------
..........................AGGCAGATTGAAAAACTTA.............................................................................................................................................................................................................1911.001.00-----------------------1.00-------
.........................CAGGCAGATTGAAAAACTTAAG...........................................................................................................................................................................................................2211.001.00----------------1.00--------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTTCCTC.....................................................................................................................................................................271.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTGG........................................................................................................................................................................241.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTTGGC......................................................................................................................................................................261.000.001.00------------------------------
...........................................................GCTTGCTTTTTTTTTTTTTTTCATG......................................................................................................................................................................251.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTCACG.........................................................................................................................................................................231.000.001.00------------------------------
...........................................................GCTTGCTTTTTTTTTTTTTTTTCTTT.....................................................................................................................................................................261.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTTCCTG.....................................................................................................................................................................271.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTTCCC......................................................................................................................................................................261.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTTCATT.....................................................................................................................................................................271.000.001.00------------------------------
............................................................................................................CTAAGCTTTTAAACTGTAG...........................................................................................................................191.000.00-----------------1.00-------------
..........................................................AGCTTGCTTTTTTTTTTTTTTCAT........................................................................................................................................................................241.000.001.00------------------------------
.........................................................................................................................................................TGAGGTGTGTATTAATTT...............................................................................1811.001.00----1.00--------------------------
...................................................................TTTTTTTTTTTTTTAAGTATTTCAG..............................................................................................................................................................251.000.00--1.00----------------------------
......................AAACAGGCAGATTGAAAAACTTAAGA..........................................................................................................................................................................................................2611.001.00------1.00------------------------
..............................AGATTGAAAAACTTAAGAAGATA.....................................................................................................................................................................................................231.000.00---1.00---------------------------
..........................................................AGCTTGCTTTTTTTTTTCAAG...........................................................................................................................................................................211.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTCAG...........................................................................................................................................................................211.000.001.00------------------------------
............................................................................................................................................................................................AGGGAACTAAAGATAAGGCA..........................................2011.001.00---1.00---------------------------
......................AAACAGGCAGATTGAAAAACTTA.............................................................................................................................................................................................................2311.001.00---------------1.00---------------
.................................................................TTTTTTTTTTTTTTTTAAGTATTCAAG..............................................................................................................................................................271.000.00--1.00----------------------------
..........................AGGCAGATTGAAAAACTT..............................................................................................................................................................................................................1811.001.00-------------------1.00-----------
............................GCAGATTGAAAAACTTAAGAAGATCA....................................................................................................................................................................................................261.000.00-------------1.00-----------------
.......................AACAGGCAGATTGAAAAACTTAAGAAG........................................................................................................................................................................................................2711.001.00----------------------------1.00--
............................GCAGATTGAAAAACTTAAGAA.........................................................................................................................................................................................................2111.001.00-------1.00-----------------------
..........................................................AGCTTGCTTTTTTTTTTTCGAC..........................................................................................................................................................................221.000.00-1.00-----------------------------
...........................................................GCTTGCTTTTTTTTTTACC............................................................................................................................................................................191.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTCACG...........................................................................................................................................................................211.000.001.00------------------------------
...........................GGCAGATTGAAAAACTTAAGAA.........................................................................................................................................................................................................2211.001.00---1.00---------------------------
..........................................................AGCTTGCTTTTTTTTTCACG............................................................................................................................................................................201.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTCAT...........................................................................................................................................................................211.000.001.00------------------------------
.....................................................................................................................TAAACTGTCCTGCTTTTG...................................................................................................................181.000.00-----------1.00-------------------
...............................GATTGAAAAACTTAAGAAGAT......................................................................................................................................................................................................211.000.00---------------------1.00---------
..........................................................AGCTTGCTTTTTTTTTTTTTTTTACCCG....................................................................................................................................................................281.000.001.00------------------------------
.................................................................TTTTTTTTTTTTTTTTAAGTATTCCAG..............................................................................................................................................................271.000.00--1.00----------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTCAGG......................................................................................................................................................................261.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTCTT.......................................................................................................................................................................251.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTTCCAT.....................................................................................................................................................................271.000.001.00------------------------------
.................GTGCGAAACAGGCAGATTGAAAAACT...............................................................................................................................................................................................................2611.001.00----1.00--------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTTTATT......................................................................................................................................................................261.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTCCTC...........................................................................................................................................................................211.000.001.00------------------------------
..........................................................AGCTTGCTTTTTTTTTTTTTTCA.........................................................................................................................................................................231.000.001.00------------------------------
..............................................................................................................................................TTACAACAGCATGAGGT...........................................................................................1720.500.50------------------------------0.50

Antisense strand
CAATTGATAATACTTCAGTGCGAAACAGGCAGATTGAAAAACTTAAGAAGGTATTAATAGCTTGCTTTTTTTTTTTTTTTTAAGTATTTTCTGTGTTCTGGGCTCTGGCTAAGCTTTTAAACTGTCCTGCTTAAATTAATCCTTACAACAGCATGAGGTGTGTATTAATTTCCATCATTTCAAATGTAAGGGAACTAAAGATAAGGCATTGAGAAACTTGCTCAGGATAAATAGACAACCAGGACTCAGT
.....................................................((((.((((((((................((......))..............))).))))).))))..................................................................................................................................
..................................................51................................................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189783DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR189782
................................................................................TAAGTATTTTCTGTGTGT........................................................................................................................................................ 181.000.00------------------------1.00------
..................................................................................................................................................................................................................................ATAAATAGACAACCAGAAAG.... 201.000.00-----1.00-------------------------
.....................................................................................................................................................................TAATTTCCATCATTTCAGT.................................................................. 191.000.00------------1.00------------------
....................................................................................................................................................................................................................................AAATAGACAACCAGGGG..... 171.000.00-----------------------------1.00-
.....................................................................................................................................................................TAATTTCCATCATTTCAT................................................................... 181.000.00-------------------------1.00-----
.......................................................................................................................................................................ATTTCCATCATTTCACAT................................................................. 181.000.00--------------1.00----------------