ID: uc003oxl.2_intron_8_0_chr6_44387335_f.3p
GENE: (9)
chr6:44390184-44390433+


(1)
AGO1.ip 		(1)
B-CELL 		(1)
BRAIN 		(12)
CELL-LINE 		(1)
HEART 		(1)
HELA 		(4)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(4)
SKIN 		(1)
XRN.ip

Sense strand
TAAAATAAAAATACCATGCTAGCTAGACCAAACATTGATTTTAACCTAGAGATCCTAACAAAACCAGCTGGACAGAATTTTGAAATCTTTATTCTTTTTTTTTTCTATATTTCCTGTGAAATAATTTATGTGAAAAACATTTGAAAGCACAATCCAAATGTAAGTGGCACTTCTGTTAATTGGGATTCCTGTCTTTCTAGGACTCCTTCTAATGGAGCTGAAGGGCTGACTCCCCGGAGTGGAACAACTC
....................................................................((((.((((....(((.......)))....)))).))))...............................................................................................................................................
..................................................51...............................................................116....................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
...........................................................................................TTCTTTTTTTTTTCTATCCTG..........................................................................................................................................2113.000.004.00-3.00--3.00-3.00--------------------
....................................................................................................................................................................................................................................ACTCCCCGGAGTGGAACAACTC2216.006.00------6.00---------------------
........................................................................................TTATTCTTTTTTTTTTCGGTT.............................................................................................................................................214.000.00-4.00--------------------------
.......................................................TAACAAAACCAGCTGGACAGA..............................................................................................................................................................................2113.003.00---3.00------------------------
...........................................................................................................................................................................................................................GAAGGGCTGACTCCCCGGAGTGGA.......2413.003.00---1.00----2.00-------------------
......................................................................................CTTTATTCTTTTTTTTTTAAAG..............................................................................................................................................223.000.00--1.00--1.00-1.00--------------------
...........................................................................................................................................................................................................................GAAGGGCTGACTCCCCGGAGTGGAA......2512.002.00---1.00------------1.00-----------
............................................................AAACCAGCTGGACAGAATTTT.........................................................................................................................................................................2112.002.00---1.00----1.00-------------------
...............................................................................................................................................................................................................................GGCTGACTCCCCGGAGTGGA.......2012.002.00---1.00----1.00-------------------
............................................................................................................................................................................................................................AAGGGCTGACTCCCCGGAGTGGAA......2412.002.00---2.00------------------------
......................................................................................CTTTATTCTTTTTTTTTCTTG...............................................................................................................................................212.000.00--2.00-------------------------
......................................................................................CTTTATTCTTTTTTTTTTAAG...............................................................................................................................................212.000.002.00---------------------------
..........................................................................................ATTCTTTTTTTTTTCTAGAG............................................................................................................................................202.000.00--2.00-------------------------
..................................................................................................................................................................................................................AATGGAGCTGAAGGGCTGACTCCCCGGAGCGG........322.000.00----2.00-----------------------
.........................................................................................TATTCTTTTTTTTTTCATC..............................................................................................................................................191.000.00---------1.00------------------
....................................................................................................................................................................................................................................ACTCCCCGGAGTGGAACAACT.2111.001.00---------------1.00------------
.....................................................................................TCTTTATTCTTTTTTTTTTCTTGGC............................................................................................................................................251.000.00----1.00-----------------------
......................................................................................CTTTATTCTTTTTTTTTTCTGAG.............................................................................................................................................231.000.00---------1.00------------------
.......................................................................................................................................................................................................................AGCTGAAGGGCTGACTCCCCGGAGCGG........271.000.00-1.00--------------------------
.....................................................................................TCTTTATTCTTTTTTTTTTGCC...............................................................................................................................................221.000.00-1.00--------------------------
.....................................................................................TCTTTATTCTTTTTTTTTTCAATT.............................................................................................................................................241.000.001.00---------------------------
.....................................................................................TCTTTATTCTTTTTTTTTTCCCAG.............................................................................................................................................241.000.001.00---------------------------
.............................................................................................................................................................................................................................AGGGCTGACTCCCCGGAG...........1811.001.00------------------1.00---------
.....................................................................................TCTTTATTCTTTTTTTTTCATG...............................................................................................................................................221.000.001.00---------------------------
...................................................................................................................................................................................TTGGGATTCCTGTCTTGCC....................................................191.000.00----1.00-----------------------
.......................................................................................TTTATTCTTTTTTTTTTCTATATTTCTTG......................................................................................................................................291.000.00-------1.00--------------------
.....................................................................................TCTTTATTCTTTTTTTTTTCTTTCT............................................................................................................................................251.000.00-1.00--------------------------
........................................................................................TTATTCTTTTTTTTTTCTCTCG............................................................................................................................................221.000.00---------1.00------------------
.........................................................................................TATTCTTTTTTTTTTCTATTAAG..........................................................................................................................................231.000.00--1.00-------------------------
........................................................................................TTATTCTTTTTTTTTTCTACTTG...........................................................................................................................................231.000.001.00---------------------------
.................................................................................................TTTTTTTCTATATTTCCCTT.....................................................................................................................................201.000.00------------1.00---------------
............................................................................................................................................................................................................................AAGGGCTGACTCCCCGGAGTGG........2211.001.00-1.00--------------------------
..........................................................................................ATTCTTTTTTTTTTCGGC..............................................................................................................................................181.000.00-1.00--------------------------
.........................................................................................................................................................................................................ACTCCTTCTAATGGAGCTGAAGGGCTGACTCC.................3211.001.00-----------1.00----------------
...................................................................................AATCTTTATTCTTTTTTTTTTG.................................................................................................................................................221.000.00-----1.00----------------------
............................................................................................................................................................................................................................AAGGGCTGACTCCCCGGAGCGG........221.000.00----1.00-----------------------
.......................................................................................................................................................................................................................AGCTGAAGGGCTGACTCCTCG..............211.000.00----------------------1.00-----
..................................................................................AAATCTTTATTCTTTTTTTTTTCTATATTTCCTG......................................................................................................................................3411.001.00-----1.00----------------------
.....................................................................................TCTTTATTCTTTTTTTTTTCGG...............................................................................................................................................221.000.00-1.00--------------------------
............................................................................................................................................................................................................................AAGGGCTGACTCCCCGGAGTG.........2111.001.00-----------------1.00----------
...........................................................................................................................................................................TCTGTTAATTGGGATTCCTG...........................................................2011.001.00-------------------1.00--------
.................................................................................................................................................................................................................TAATGGAGCTGAAGGGCTGACTCCCCGGAGTGG........3311.001.00----1.00-----------------------
.................................................................................................................................................................................................................TAATGGAGCTGAAGGGCTGACTCC.................2411.001.00------------------------1.00---
.......................................................................................TTTATTCTTTTTTTTTTCTCATC............................................................................................................................................231.000.00---------1.00------------------
..................................................................................................................................................................................................................AATGGAGCTGAAGGGCTGACTCCCCGGAGTGG........3211.001.00-----------1.00----------------
...............................................................................................................................................................GTAAGTGGCACTTCTGTTAATT.....................................................................2211.001.00-------------1.00--------------
.....................................................................................TCTTTATTCTTTTTTTTTTCATG..............................................................................................................................................231.000.001.00---------------------------
...................................................................................................................................................................................TTGGGATTCCTGTCTTGCA....................................................191.000.00----1.00-----------------------
................................................................................................TTTTTTTTCTATATTTCCCTT.....................................................................................................................................211.000.00------------1.00---------------
.....................................................................................TCTTTATTCTTTTTTTTTAAAG...............................................................................................................................................221.000.00-----1.00----------------------
...................................................................................................................................................................................................................ATGGAGCTGAAGGGCTGACTCCCCGGAGCGG........311.000.00----1.00-----------------------
............................................................AAACCAGCTGGACAGAATTTTGAA......................................................................................................................................................................2411.001.00-------------1.00--------------
............................................................................................................................................................................................................................AAGGGCTGACTCCCCGGAGT..........2011.001.00--------------------1.00-------
...............................................................................................................................................AAAGCACAATCCAAAATAG........................................................................................191.000.00----------1.00-----------------
...........................................................................................TTCTTTTTTTTTTCTATCCCG..........................................................................................................................................211.000.00--1.00-------------------------
.......................................................TAACAAAACCAGCTGGACAGAATTTT.........................................................................................................................................................................2611.001.00--------1.00-------------------
.....................................................................................................................................................................................................................GGAGCTGAAGGGCTGACGATG................211.000.00--------------1.00-------------
.............................................................................................CTTTTTTTTTTCTATATTAG.........................................................................................................................................201.000.00-------1.00--------------------
.....................................................................................TCTTTATTCTTTTTTTTTTAAAG..............................................................................................................................................231.000.00-----1.00----------------------
.............................................................................................................................................................................................................................AGGGCTGACTCCCCGGAGTGGA.......2211.001.00-------------------------1.00--
........................................................................................................................................................................................................................GCTGAAGGGCTGACTCCCCGGA............2211.001.00--------------------------1.00-

Antisense strand
TAAAATAAAAATACCATGCTAGCTAGACCAAACATTGATTTTAACCTAGAGATCCTAACAAAACCAGCTGGACAGAATTTTGAAATCTTTATTCTTTTTTTTTTCTATATTTCCTGTGAAATAATTTATGTGAAAAACATTTGAAAGCACAATCCAAATGTAAGTGGCACTTCTGTTAATTGGGATTCCTGTCTTTCTAGGACTCCTTCTAATGGAGCTGAAGGGCTGACTCCCCGGAGTGGAACAACTC
....................................................................((((.((((....(((.......)))....)))).))))...............................................................................................................................................
..................................................51...............................................................116....................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
..........................................AACCTAGAGATCCTAAGG.............................................................................................................................................................................................. 181.000.00-----------------------1.00----
....................................................................................................................TGAAATAATTTATGTGTATG.................................................................................................................. 201.000.00----------1.00-----------------
........................................................................................................................................................................................ATTCCTGTCTTTCTAATCC............................................... 191.000.00---------------------1.00------
..............................................................................................................................................TTGGATTGTGCTTTC............................................................................................. 1570.140.14---------------------------0.14