ID: uc003oxd.2_intron_2_0_chr6_44224616_r.3p
GENE: (1)
chr6:44224566-44224815-


(3)
AGO2.ip
(4)
B-CELL
(5)
BREAST
(26)
CELL-LINE
(5)
CERVIX
(3)
HEART
(4)
LIVER
(1)
OTHER
(21)
SKIN
(1)
TESTES
(3)
UTERUS
(1)
XRN.ip

Sense strand
GAGGGAGGAAGCTCTGCCTGGCCAGCGCCGGCGCACCCCCTCCCCGAGAGAGAGAGAGAGAGAGAGGCTCTTTGTCCGGGCCGGAGCTGCAGCGGAGGGGGCGGGGAGGAGACTCCGGGCACTACTCCAGTGTGGTCCCCTCTGGAGGGCGGAGGGGATGAGGAGCTGCGCCCTAATCCTTATGTCCGCTTTCCTTACAGATGGTGGGCAGTGGTGGTGCTGGCTGCGTTCCCCTCCCTAGGGGCAGGTG
...............................................................................................................................................((((((((((((((((.(((.((...))))).))))))...))))))))))........................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038858(GSM458541)
MEL202. (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR038855(GSM458538)
D10. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM339994(GSM339994)
hues6. (cell line)
SRR040022(GSM532907)
G575N. (cervix)
SRR038859(GSM458542)
MM386. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR038863(GSM458546)
MM603. (cell line)
GSM532887(GSM532887)
G761N. (cervix)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR038856(GSM458539)
D11. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................................................................................................TGGAGGGCGGAGGGGATGAGG.......................................................................................2117.007.00--1.00-------1.001.00--------------------------------1.00------1.00---1.00----------------1.00--
............................................................................................................................................TCTGGAGGGCGGAGGGGATGAG........................................................................................2216.006.00-5.00----------------------------------1.00--------------------------------------
............................................................................................................................................TCTGGAGGGCGGAGGGGATATC........................................................................................2214.002.00---4.00-----------------------------------------------------------------------
.............................................................................................................................................................................TAATCCTTATGTCCGCTTTCCTT......................................................2314.004.00----------------1.00--1.00----1.00---------------------1.00----------------------------
.............................................................................................................................................CTGGAGGGCGGAGGGGATGAGG.......................................................................................2214.004.00-------2.00-------------------------1.00----------------------1.00------------------
..............................................................................................................................................TGGAGGGCGGAGGGGATGAG........................................................................................2013.003.00--1.00-------------1.00--------------------------------1.00-------------------------
............................................................................................................................................TCTGGAGGGCGGAGGGGATGAGT.......................................................................................2313.006.00------------------------------1.00----1.00--------------------------1.00------------
...........................................CCGAGAGAGAGAGAGAGAGATGGG.......................................................................................................................................................................................242.000.00--------------------2.00------------------------------------------------------
.........................CGCCGGCGCACCCCCCC................................................................................................................................................................................................................172.000.001.00--------------------1.00-----------------------------------------------------
...................................................................................................................................GTGGTCCCCTCTGGAGGGCGGAG................................................................................................2312.002.00-------------------------1.00--------------------------------1.00----------------
............................................................................................................................................TCTGGAGGGCGGAGGGGATGAGGT......................................................................................2412.001.00------------1.00---------------------------------------------------------1.00----
.............................................................................................................................................................................TAATCCTTATGTCCGCTTTCCT.......................................................2212.002.00---------------------------1.00----1.00------------------------------------------
............................................................................................................................................TCTGGAGGGCGGAGGGGAT...........................................................................................1912.002.001.00--------------------------------------1.00-----------------------------------
..............................................................................................................................................TGGAGGGCGGAGGGGATG..........................................................................................1812.002.00------------------1.00-----------------------1.00--------------------------------
..........................................................................................................AGGAGACTCCGGGCACTACT............................................................................................................................2012.002.00-----2.00---------------------------------------------------------------------
..............................................................................................................................................TGGAGGGCGGAGGGGATGA.........................................................................................1911.001.00--------------1.00------------------------------------------------------------
............................................................................CGGGCCGGAGCTGCAGCGGAG.........................................................................................................................................................2111.001.00-------------------------------------1.00-------------------------------------
............TCTGCCTGGCCAGCGCCGGC..........................................................................................................................................................................................................................2011.001.00-------------------------------1.00-------------------------------------------
........................................................................................GCAGCGGAGGGGGCGAGCC...............................................................................................................................................191.000.00----------------------------------------------------1.00----------------------
...........................................................................CCGGGCCGGAGCTGCAGC.............................................................................................................................................................1811.001.00------------------------------------------------------1.00--------------------
...................................................................................GAGCTGCAGCGGAGGGGGCGGGGAGGAG...........................................................................................................................................2811.001.00---------------1.00-----------------------------------------------------------
...........................................................................................................................................CTCTGGAGGGCGGAGGGGATGAGGAGCTG..................................................................................2911.001.00----1.00----------------------------------------------------------------------
.........................CGCCGGCGCACCCCCCCC...............................................................................................................................................................................................................181.000.00---------------------------------------------------------------1.00-----------
.......................................................................................TGCAGCGGAGGGGGCAGC.................................................................................................................................................181.000.00-----------------------------------------1.00---------------------------------
..................................................................................................................................................GGGCGGAGGGGATGAGGAG.....................................................................................1911.001.00-----------------------------------------------------------------1.00---------
............................................................................................................................................TCTGGAGGGCGGAGGGGATG..........................................................................................2011.001.001.00--------------------------------------------------------------------------
...............................................................................................................................................................................................................GCAGTGGTGGTGCTGGTTT........................191.000.00----------------------1.00----------------------------------------------------
.........................CGCCGGCGCACCCCCCCAC..............................................................................................................................................................................................................191.000.00-----------------------1.00---------------------------------------------------
.....AGGAAGCTCTGCCTGGCCAGCGCCGGCG.........................................................................................................................................................................................................................2811.001.00-------------1.00-------------------------------------------------------------
....................................................................................................................................................................................................ACAGATGGTGGGCAGGGG....................................181.000.00-----------------------------------------------------------1.00---------------
............................................................................................................................................TCTGGAGGGCGGAGGGGATGAGA.......................................................................................2311.006.00-------------------------------------------------------------------1.00-------
.........................CGCCGGCGCACCCCCCCCC..............................................................................................................................................................................................................191.000.00---------------------------------------------------------1.00-----------------
.............................................................................................................................................CTGGAGGGCGGAGGGGATGAA........................................................................................211.000.00------------------------------------------------------------------1.00--------
...................................................................................................................................................GGCGGAGGGGATGAGGGCCG...................................................................................201.000.00--------------------------1.00------------------------------------------------
...........................................................................................................................................CTCTGGAGGGCGGAGGGGATGAGGAGC....................................................................................2711.001.00----------------------------1.00----------------------------------------------
.............................................................................................................................................................................TAATCCTTATGTCCGCTTTCCTTAC....................................................2511.001.00-----------------------------------------------1.00---------------------------
............................................................................................................................................TCTGGAGGGCGGAGGGGATGAA........................................................................................221.000.00--------1.00------------------------------------------------------------------
......................................................................................CTGCAGCGGAGGGGGCGGGGAGGAGACT........................................................................................................................................2811.001.00--------------------------------------------------------------------1.00------
...........................................................................................GCGGAGGGGGCGGGGAGGT............................................................................................................................................191.000.00-------------------1.00-------------------------------------------------------
.............................................................................................................................................................................TAATCCTTATGTCCGCTTTCCCTAC....................................................251.000.00-------------------------------------------------------------1.00-------------
...................................................................................................................................................................................................TACAGATGGTGGGCAGTGGTG..................................2111.001.00-------1.00-------------------------------------------------------------------
..............................................................................................................................................TGGAGGGCGGAGGGGATGAGT.......................................................................................2111.003.00-----------------------------------------------------------------------1.00---
...........................................................................................................................................CTCTGGAGGGCGGAGGGGATGAGG.......................................................................................2411.001.00-----------1.00---------------------------------------------------------------
........................................................................................................................................................AGGGGATGAGGAGCTGCGCCCTAATC........................................................................2611.001.00--------------1.00------------------------------------------------------------
............................................................................................CGGAGGGGGCGGGGATT.............................................................................................................................................171.000.00--------------------------------------1.00------------------------------------
..............................................................................................................................................TGGAGGGCGGAGGGGATGAGGT......................................................................................2211.007.00-----------------1.00---------------------------------------------------------
.............................................................................................................................................CTGGAGGGCGGAGGGGATGAT........................................................................................211.000.00-----1.00---------------------------------------------------------------------
............................................................................................................................................TCTGGAGGGCGGAGGGTG............................................................................................181.000.00------1.00--------------------------------------------------------------------
.............................................................................................................................................................................TAATCCTTATGTCCGCTT...........................................................1811.001.00------------------1.00--------------------------------------------------------
.........................CGCCGGCGCACCCCCC.................................................................................................................................................................................................................161.000.00---------------------1.00-----------------------------------------------------
............................................................................................................................................TCTGGAGGGCGGAGGGGATGAGG.......................................................................................2311.001.00-----------------------------------------------------1.00---------------------
................................................................................................................................................GAGGGCGGAGGGGATGAGG.......................................................................................1911.001.00----------------------1.00----------------------------------------------------
...................................................................................................................................................GGCGGAGGGGATGAGGAGC....................................................................................1911.001.00--------1.00------------------------------------------------------------------
.................................................................................................................................................AGGGCGGAGGGGATGAGGA......................................................................................1911.001.00----------1.00----------------------------------------------------------------
............................................................................................................................................TCTGGAGGGCGGAGGGGATGAGAA......................................................................................2411.006.00---------------------------------------------1.00-----------------------------
............................................................................................CGGAGGGGGCGGGGAGCGGG..........................................................................................................................................201.000.00----------------------------------------1.00----------------------------------
.............................................................................................................................................................................TAATCCTTATGTCCGCTTTC.........................................................2011.001.00---------------------------------------------------------------------1.00-----
...............................................................................................................................................................................................................GCAGTGGTGGTGCTGTTTG........................191.000.00-----------------------------1.00---------------------------------------------
...............................................................................................................................................GGAGGGCGGAGGGGAT...........................................................................................1630.330.33-----------------------0.33---------------------------------------------------
..............................................................................................................................................TGGAGGGCGGAGGGGA............................................................................................1650.200.20-------------------------------------------------------------------------0.20-

Antisense strand
GAGGGAGGAAGCTCTGCCTGGCCAGCGCCGGCGCACCCCCTCCCCGAGAGAGAGAGAGAGAGAGAGGCTCTTTGTCCGGGCCGGAGCTGCAGCGGAGGGGGCGGGGAGGAGACTCCGGGCACTACTCCAGTGTGGTCCCCTCTGGAGGGCGGAGGGGATGAGGAGCTGCGCCCTAATCCTTATGTCCGCTTTCCTTACAGATGGTGGGCAGTGGTGGTGCTGGCTGCGTTCCCCTCCCTAGGGGCAGGTG
...............................................................................................................................................((((((((((((((((.(((.((...))))).))))))...))))))))))........................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038858(GSM458541)
MEL202. (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR038855(GSM458538)
D10. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM339994(GSM339994)
hues6. (cell line)
SRR040022(GSM532907)
G575N. (cervix)
SRR038859(GSM458542)
MM386. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR038863(GSM458546)
MM603. (cell line)
GSM532887(GSM532887)
G761N. (cervix)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR038856(GSM458539)
D11. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................GGGGGTGCGCCGGCG.................................................................................................................................................................................................................. 15112.0012.002.00--------2.00--1.001.00-1.00------------------1.00--------1.00----1.00-1.00-------------1.00----------
..............................................................................................................................................................................AGGAAAGCGGACATAAGGATT....................................................... 2112.002.00----2.00----------------------------------------------------------------------
...............................................................................................................................................................................................................................CTGCGTTCCCCTCCCTTGTG....... 201.000.00------1.00--------------------------------------------------------------------
.......................................................................................................................................................................................ATCTGTAAGGAAAGCGGAC................................................ 1911.001.00--1.00------------------------------------------------------------------------
......................................................................................................................................................................................ACCATCTGTAAGGAAAGCGGACA............................................. 2311.001.00--1.00------------------------------------------------------------------------
.........................................CCCCGAGAGAGAGAGAGGG.............................................................................................................................................................................................. 191.000.00--------1.00------------------------------------------------------------------
.........................................................................................................................................................................GGAAAGCGGACATAAGGATTAGGGC........................................................ 2511.001.00------------------------------------------------------------1.00--------------
.....................................................................................................................................................CGGAGGGGATGAGGAGCTGGGT............................................................................... 221.000.00------1.00--------------------------------------------------------------------
........................................................................................................................................................................GACATAAGGATTAGGGCG................................................................ 1811.001.00-----------------1.00---------------------------------------------------------
...........................................................................................................................................................................................................................GGGGAACGCAGCCAG................ 1590.110.11--------------------------------------------------------------------------0.11