ID: uc003ouk.2_intron_18_0_chr6_43171331_f
GENE: (19)
chr6:43171281-43171641+


(1)
AGO2.ip 		(3)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(9)
CELL-LINE 		(3)
CERVIX 		(3)
HEART 		(1)
HELA 		(4)
LIVER 		(2)
OTHER 		(12)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
AGCCGGGACATAGCAGAGGACCACCGGCGCCTCCTCCAGCTCTGTCCCAGGTGGGTGGGGCCTGAGGAGGGAAGATGGGTAAGGGAACAGGACACTGTGAGAAGTAGGAGGGATGCTCCTGTGGGAGTCCGGAAGGGAAAGCTGCAGCCAGGACATGAGGGGGAAGGTGAACGTAGGTGAGAAGTTTGTGTTAATTGGGAAAAGTTGGGTCAGGGACCGAACAGGGGTGATTGGGAGCTGATCTGCACTTGAATGGAGGCCTCTGGGAAATCGGTGCCATTAATCCTCCGCCATGCACTGTTTGTTCCCAGACTGAACAGGGTTTTGCGCCACGAGCAGAATTTTGCTGACCGCTTCCTCC
...................................................................................................................................................................((..(((((...........)))))..))...........(((.((((...)))).)))...........................................................................................................................................
.................................................................................................................................................................162...................................................................232...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR343336SRR343337SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189785SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................................................GTGAACGTAGGTGAGAACCCC..............................................................................................................................................................................21120.001.0016.001.001.00-1.00-------------------------1.00---------------
.......................................................................................................................................................................TGAACGTAGGTGAGAACCCC..............................................................................................................................................................................205.000.00-2.002.00-----------------1.00-------------------------
........................................................................................................................................................................GAACGTAGGTGAGAACCC...............................................................................................................................................................................183.000.00-2.00--1.00-----------------------------------------
......................................................................................................................................................................GTGAACGTAGGTGAGGGC.................................................................................................................................................................................183.000.00---2.00-------1.00----------------------------------
.......................................................................................................................................................................TGAACGTAGGTGAGAGCTT...............................................................................................................................................................................1932.671.33------2.00--------------------------------0.33--0.33---
........................................................................................................................................................................GAACGTAGGTGAGAACCCC..............................................................................................................................................................................192.000.00-2.00--------------------------------------------
......................................................................................................................................................................GTGAACGTAGGTGAGAACCC...............................................................................................................................................................................2012.001.002.00---------------------------------------------
......................................................................................................................................................................GTGAACGTAGGTGAGGGCC................................................................................................................................................................................192.000.00---1.00-------1.00----------------------------------
.......................................................................................................................................................................TGAACGTAGGTGAGAGCT................................................................................................................................................................................1832.001.33------0.33-------------------------------0.67-0.67---0.33-
.......................................................................................................................................................................TGAACGTAGGTGAGA...................................................................................................................................................................................1531.331.33------0.67--------------------------------0.33---0.33--
...................................................................................................................................................................................................................AGGGACCGAACAGGGGT.....................................................................................................................................1711.001.00-----------------------------------1.00----------
......................................................................................................................................................GGACATGAGGGGGAAGTCT................................................................................................................................................................................................191.000.00-------------------------1.00--------------------
...........................................................................................................................................................TGAGGGGGAAGGTGAACTCTG.........................................................................................................................................................................................211.000.00-------------------------------------1.00--------
..........................................................................................................................................................................................................................................................................................................................................................CTGACCGCTTCCTCCTTGA191.000.00------------1.00---------------------------------
............................GCCTCCTCCAGCTCTGTCCCAG.......................................................................................................................................................................................................................................................................................................................2211.001.00---------1.00------------------------------------
......................................................................................................................................................................GTGAACGTAGGTGAGAA..................................................................................................................................................................................1711.001.00--1.00-------------------------------------------
........................................................................................................................................................................GAACGTAGGTGAGAACA................................................................................................................................................................................171.000.00--1.00-------------------------------------------
.................................CTCCAGCTCTGTCCCAGAC.....................................................................................................................................................................................................................................................................................................................191.000.00-----------------1.00----------------------------
......................................................................................................................................................................GTGAACGTAGGTGAGA...................................................................................................................................................................................1611.001.00---------1.00------------------------------------
.......ACATAGCAGAGGACCCCAG...............................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------1.00-----------------
....................................................................................GAACAGGACACTGTGAGAAGTAGGAGGGATGC.....................................................................................................................................................................................................................................................3211.001.00----------------1.00-----------------------------
...................................................................................................................................................................................................................................................................................................................CCAGACTGAACAGGGTTTTGCGCCACG...........................2711.001.00----------1.00-----------------------------------
......................................................................................................................................................................GTGAACGTAGGTGAGAGCTC...............................................................................................................................................................................2011.001.00----1.00-----------------------------------------
......................................................................................................................................................................................................................................................................................................................GACTGAACAGGGTTTTGCGCCACGAGCA.......................2811.001.00----------1.00-----------------------------------
...........................................................................................................................................................................................................................................................AATGGAGGCCTCTGGGAAATCGGTGCC...................................................................................2711.001.00-------------------------------1.00--------------
.............CAGAGGACCACCGGCGCCTCCTCC....................................................................................................................................................................................................................................................................................................................................2411.001.00-------1.00--------------------------------------
......................................................................................................................................................................GTGAACGTAGGTGAGAGCTT...............................................................................................................................................................................2011.001.00--------------1.00-------------------------------
...................................CCAGCTCTGTCCCAGACT....................................................................................................................................................................................................................................................................................................................181.000.00-------1.00--------------------------------------
.............................................................................................................................................................................................................................................................TGGAGGCCTCTGGGAAATCGGT......................................................................................2211.001.00------------------1.00---------------------------
...................................................................................................................................................................................AGAAGTTTGTGTTAATTGGGAA................................................................................................................................................................2211.001.00-----------------------1.00----------------------
.........................................................................................................................................................................................................................................................................................................................TGAACAGGGTTTTGCGCCACGAGCAG......................2611.001.00---------------------------------1.00------------
....GGGACATAGCAGAGGACCACCG...............................................................................................................................................................................................................................................................................................................................................2211.001.00-----------------------------1.00----------------
...............................................................GAGGAGGGAAGATGGCGG........................................................................................................................................................................................................................................................................................181.000.00--------------------------1.00-------------------
......................................................................................................................................................................GTGAACGTAGGTGAGAAC.................................................................................................................................................................................1811.001.001.00---------------------------------------------
............................................................................................CACTGTGAGAAGTAGGAGGGATGCTCCTGT...............................................................................................................................................................................................................................................3011.001.00---------------------------1.00------------------
.......................................................................................................................................................................TGAACGTAGGTGAGAACCGC..............................................................................................................................................................................201.000.00----1.00-----------------------------------------
......................................................................................................................................................................GTGAACGTAGGTGAGGG..................................................................................................................................................................................171.000.00---1.00------------------------------------------
.....................................................................................................................................................................................................................................................................TCTGGGAAATCGGTGCCATT................................................................................2011.001.00----------------------------------1.00-----------
................................................................................................................................CCGGAAGGGAAAGCTGCAG......................................................................................................................................................................................................................1911.001.00--------------------------------1.00-------------
.................................................................................................................................................................................................................................................................................................................................................AGAATTTTGCTGACCGC.......1720.500.50-----------------------------------------0.50----

Antisense strand
AGCCGGGACATAGCAGAGGACCACCGGCGCCTCCTCCAGCTCTGTCCCAGGTGGGTGGGGCCTGAGGAGGGAAGATGGGTAAGGGAACAGGACACTGTGAGAAGTAGGAGGGATGCTCCTGTGGGAGTCCGGAAGGGAAAGCTGCAGCCAGGACATGAGGGGGAAGGTGAACGTAGGTGAGAAGTTTGTGTTAATTGGGAAAAGTTGGGTCAGGGACCGAACAGGGGTGATTGGGAGCTGATCTGCACTTGAATGGAGGCCTCTGGGAAATCGGTGCCATTAATCCTCCGCCATGCACTGTTTGTTCCCAGACTGAACAGGGTTTTGCGCCACGAGCAGAATTTTGCTGACCGCTTCCTCC
...................................................................................................................................................................((..(((((...........)))))..))...........(((.((((...)))).)))...........................................................................................................................................
.................................................................................................................................................................162...................................................................232...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR343336SRR343337SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189785SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................................................................................................................................................................................................................................................................GCTGACCGCTTCCTCCCA 183.000.00-----3.00----------------------------------------
...........................................................................................................................................................................................................................................................................................TCCTCCGCCATGCACCGTA........................................................... 192.000.00--------2.00-------------------------------------
.......................CCGGCGCCTCCTCCAGGTCG.............................................................................................................................................................................................................................................................................................................................. 201.000.00------------------------------------1.00---------
............................................................................................................................................................................................................................ACAGGGGTGATTGGGCC............................................................................................................................ 171.000.00------------------------1.00---------------------
.......................CCGGCGCCTCCTCCAGCCG............................................................................................................................................................................................................................................................................................................................... 191.000.00---------------------1.00------------------------
........................CGGCGCCTCCTCCAGCCGGC............................................................................................................................................................................................................................................................................................................................. 201.000.00-------------------1.00--------------------------
........................CGGCGCCTCCTCCAGCCCGG............................................................................................................................................................................................................................................................................................................................. 201.000.00---------------1.00------------------------------
.......................CCGGCGCCTCCTCCACGGC............................................................................................................................................................................................................................................................................................................................... 191.000.00-------1.00--------------------------------------
...........................................................................................................................................................................................GTGTTAATTGGGAAAGGA............................................................................................................................................................ 181.000.00-------------1.00--------------------------------
....................................................................................................................................................................................................................GGGACCGAACAGGGGGG.................................................................................................................................... 171.000.00----------------------1.00-----------------------
........................CTGGAGGAGGCGCCG.................................................................................................................................................................................................................................................................................................................................. 1570.140.14---------------------------------------------0.14