ID: uc003ots.1_intron_3_0_chr6_43023935_r
GENE: MRPL2(3)
chr6:43023885-43024094-


(1)
AGO2.ip
(2)
B-CELL
(2)
BRAIN
(4)
BREAST
(28)
CELL-LINE
(3)
HEART
(1)
KIDNEY
(3)
LIVER
(2)
OTHER
(20)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
TCAGGACCCTTTGAGGAGAAGGTTATCCAAGTCCGCTATGATCCCTGTAGGCAAGTTTGGGATGTGGGATGATGATGGAATGGTCTGAATAACTCCATAGCTTCTCAGAAGATGTGGGGCTGCCTAGACGGTCTGCTTACCTGTCCCTCACCCTGATTAGGTCAGCAGACATAGCTCTGGTTGCTGGGGGCAGCCGGAAACGCTGGATCA
..................................................................((((.((......)).))))......(((((((.((((...)))).)))))))...........................................................................................
..............................................................63...............................................................128................................................................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR029129(GSM416758)
SW480. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR038860(GSM458543)
MM426. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038857(GSM458540)
D20. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)
................................................................TGGGATGATGATGGAATGGTCTGAAT........................................................................................................................261111.00111.0015.0012.0012.004.009.005.00-6.006.00--3.001.00-3.00-3.001.003.001.002.00-2.001.00-1.002.00----1.00-1.00-1.00-1.001.00--1.001.001.001.001.001.001.00-1.00-1.001.001.00---1.001.00----1.00----
.................................CGCTATGATCCCTGTAG................................................................................................................................................................17110.0010.00------7.00----------------1.001.00----------------------------------1.00--------
...................................................................GATGATGATGGAATGGTCTGAAT........................................................................................................................2316.006.00-----1.00------2.00------1.00----------------------------------1.00-----1.00-------
...........................CAAGTCCGCTATGATCC......................................................................................................................................................................1714.004.00---------4.00----------------------------------------------------------
...............................................................GTGGGATGATGATGGAATGGTCTGAAT........................................................................................................................2714.004.00---4.00----------------------------------------------------------------
..................................................GCAAGTTTGGGATGTGGAAA............................................................................................................................................203.000.00------------------------1.00--2.00----------------------------------------
..................................................................GGATGATGATGGAATGGTCTGAAT........................................................................................................................2413.003.00-----1.00------------------------1.00-------------------------------1.00-----
..................................................GCAAGTTTGGGATGTGGG..............................................................................................................................................1813.003.00-------------3.00------------------------------------------------------
................................................................TGGGATGATGATGGAATGGTCT............................................................................................................................2212.002.00------------------------------------1.00---1.00---------------------------
.......................................................................................................................................................................................CTGGGGGCAGCCGGAAACGCTGGACCA272.000.00---------------2.00----------------------------------------------------
.......................................................TTTGGGATGTGGGATGATGATGGT...................................................................................................................................242.000.00-----------------2.00--------------------------------------------------
..........................................................................................................AGAAGATGTGGGGCTCAG......................................................................................181.000.00---------------------1.00----------------------------------------------
..................................................................GGATGATGATGGAATGGTCTGAATAACTCCA.................................................................................................................3111.001.00-----1.00--------------------------------------------------------------
................................CCGCTATGATCCCTGTAG................................................................................................................................................................1811.001.00-------1.00------------------------------------------------------------
....................................................................ATGATGATGGAATGGTCTGA..........................................................................................................................2011.001.00------------1.00-------------------------------------------------------
...................................................................GATGATGATGGAATGGTCTGAA.........................................................................................................................2211.001.00---------------------1.00----------------------------------------------
...............................................................GTGGGATGATGATGGAATGGTCTGAATA.......................................................................................................................2811.001.00--------------------------------1.00-----------------------------------
.CAGGACCCTTTGAGGAGAAG.............................................................................................................................................................................................2021.001.00------------------------------------------------1.00-------------------
.............................................................................................................................................................................................GCAGCCGGAAACGCTGGATCA2111.001.00--------------------------------------------------------1.00-----------
...................................................................GATGATGATGGAATGGTCTG...........................................................................................................................2011.001.00-1.00------------------------------------------------------------------
................................................................TGGGATGATGATGGAATGGTCTGACT........................................................................................................................261.000.00-----------1.00--------------------------------------------------------
.....................................................................TGATGATGGAATGGTCTGAATAACTC...................................................................................................................2611.001.00-------------------------------------------------------------1.00------
............................AAGTCCGCTATGATCCCTGTAG................................................................................................................................................................2211.001.00----------------------------1.00---------------------------------------
.......................................................TTTGGGATGTGGGATGATAATG.....................................................................................................................................221.000.00-------------1.00------------------------------------------------------
...........................CAAGTCCGCTATGATC.......................................................................................................................................................................1611.001.00---------1.00----------------------------------------------------------
...................................................................................................GCTTCTCAGAAGATGTGGGGCTGCCTA....................................................................................2711.001.00-------------------------1.00------------------------------------------
...............................................................GTGGGATGATGATGGAATGGTCTGTAT........................................................................................................................271.000.00---1.00----------------------------------------------------------------
..................................GCTATGATCCCTGTAG................................................................................................................................................................1621.001.00----------------------------------------------------------------0.500.50--
.........................................................................................................................................................TGATTAGGTCAGCAGACATA.....................................2011.001.00-------------------------------------------------------1.00------------
........................................................................TGATGGAATGGTCTGAAT........................................................................................................................1811.001.00----------------------------------1.00---------------------------------
.....................................................................................................................................................................CAGACATAGCTCTGGTTGCTGG.......................2220.500.50------------------------------------------------------------------0.50-

Antisense strand
TCAGGACCCTTTGAGGAGAAGGTTATCCAAGTCCGCTATGATCCCTGTAGGCAAGTTTGGGATGTGGGATGATGATGGAATGGTCTGAATAACTCCATAGCTTCTCAGAAGATGTGGGGCTGCCTAGACGGTCTGCTTACCTGTCCCTCACCCTGATTAGGTCAGCAGACATAGCTCTGGTTGCTGGGGGCAGCCGGAAACGCTGGATCA
..................................................................((((.((......)).))))......(((((((.((((...)))).)))))))...........................................................................................
..............................................................63...............................................................128................................................................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR029129(GSM416758)
SW480. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR038860(GSM458543)
MM426. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038857(GSM458540)
D20. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)
...............................................................................................................................................................GGTCAGCAGACATAGATCA................................ 192.500.00----------2.33--------------------------------------------------------0.17
..........................................................GGGATGTGGGATGATTAG...................................................................................................................................... 182.000.00-----------------------------1.00--------------------1.00-----------------
...............................................................................................................................................................GGTCAGCAGACATAGATC................................. 181.330.00----------1.33---------------------------------------------------------
...................AGGTTATCCAAGTCCGCTATCCTC....................................................................................................................................................................... 241.000.00---------------1.00----------------------------------------------------
..............................................................................................................................................................AGGTCAGCAGACATATCAC................................. 191.000.00---------------------------------------1.00----------------------------
...............................................................................................................................................................CTATGTCTGCTGACC.................................... 1560.330.33----------0.33---------------------------------------------------------
...............................................................................................................................................................GGTCAGCAGACATAGATA................................. 180.330.00----------0.33---------------------------------------------------------
...............................................................................................................................................................GGTCAGCAGACATAGAT.................................. 170.170.00----------0.17---------------------------------------------------------