uc003otr.1_intron_0_0_chr6_43008863

GCGCCAGCAAGAAGGCTGCCCGAGGCCCAAACAGTTCAGAGCTTGAGTTCTGCAGAATATTAAAGTGCTCACAGTAGCGTGGCACAAAGTCATCATCCCGCCAGGATGAGGTCAGAAAATTGTTCACCTGGAAGGAAGGGGCAGGAGCATGAAGACACAACCCAACATGCCACCATTATGGTGTCCCCTCTCTCCCGCAGGCCTGCTCCTGCCCACCTGCTTCTCCACCACGGCCCGCCAACAGCGCGTC
................................................................((((.(((......))))))).......((((((.....)))))).............................................................................................................................................
.......................................................56...................................................................125...........................................................................................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189784

DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)

SRR189782

SRR189786

SRR189785

SRR189787

DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)

SRR037937(GSM510475)
293cand2. (cell line)

SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)

SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)

GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)

SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR343335

SRR033728(GSM497073)
MALT (MALT413). (B cell)

SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)

SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)

RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)

DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)

SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)

SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)

SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)

SRR037936(GSM510474)
293cand1. (cell line)

SRR037935(GSM510473)
293cand3. (cell line)

SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)

DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)

SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)

GSM532874(GSM532874)
G699T. (cervix)

SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)

SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)

TAX577739(Rovira)
total RNA. (breast)

SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)

SRR037938(GSM510476)
293Red. (cell line)

SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR390723(GSM850202)
total small RNA. (cell line)

DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)

TAX577579(Rovira)
total RNA. (breast)

SRR038857(GSM458540)
D20. (cell line)

SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)

SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)

TAX577744(Rovira)
total RNA. (breast)

GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)

SRR029131(GSM416760)
MCF7. (cell line)

SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)

SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)

SRR033724(GSM497069)
L428 cell line (L428). (B cell)

SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)

SRR040008(GSM532893)
G727N. (cervix)

............................................................TAAAGTGCTCACAGTGCAG...........................................................................................................................................................................

65.00

0.00

37.00

7.00

8.00

2.00

1.00

............................................................TAAAGTGCTCACAGTGCA............................................................................................................................................................................

13.00

0.00

3.00

1.00

6.00

1.00

............................................................TAAAGTGCTCACAGTGC.............................................................................................................................................................................

8.00

0.00

2.00

6.00

......................................................................................................AGGATGAGGTCAGAACATC.................................................................................................................................

7.00

0.00

7.00

............................................................TAAAGTGCTCACAGTGCAT...........................................................................................................................................................................

4.00

0.00

1.00

............................................................TAAAGTGCTCACAGTAGGTAG.........................................................................................................................................................................

4.00

0.00

2.00

............................................................TAAAGTGCTCACAGTTCAG...........................................................................................................................................................................

3.00

0.00

1.00

2.00

............................................................TAAAGTGCTCACAGTCCAG...........................................................................................................................................................................

2.00

0.00

2.00

............................................................TAAAGTGCTCACAGTGGAA...........................................................................................................................................................................

1.00

0.00

1.00

............................................................TAAAGTGCTCACAGTACAG...........................................................................................................................................................................

1.00

0.00

1.00

....................................................................................................................................AGGAAGGGGCAGGAGCTGG...................................................................................................

1.00

0.00

1.00

.................................................................................................................................GGAAGGAAGGGGCAGGAGCA.....................................................................................................

1.00

.......................................................................................................................................AAGGGGCAGGAGCATCA..................................................................................................

1.00

0.00

1.00

............................................................TAAAGTGCTCACAGTGCAA...........................................................................................................................................................................

1.00

0.00

1.00

............................................................TAAAGTGCTCACAGTTCA............................................................................................................................................................................

1.00

0.00

1.00

................................................................................................................................TGGAAGGAAGGGGCAGGAGTCGG...................................................................................................

1.00

0.00

1.00

.............................................................AAAGTGCTCACAGTAGGTAG.........................................................................................................................................................................

1.00

0.00

1.00

............................................................TAAAGTGCTCACAGTACTGG..........................................................................................................................................................................

1.00

0.00

1.00

............................................................TAAAGTGCTCACAGTGCCG...........................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................................................................................CCCGCCAACAGCGCGTCC

1.00

0.00

1.00

................................................................................................................................TGGAAGGAAGGGGCAGGA........................................................................................................

0.67

0.33

0.50

................................................................................................................................TGGAAGGAAGGGGCAGG.........................................................................................................

0.20

Size

Perfect hit

Total Norm

Perfect Norm

SRR189784

DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)

SRR189782

SRR189786

SRR189785

SRR189787

DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)

SRR037937(GSM510475)
293cand2. (cell line)

SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)

SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)

GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)

SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR343335

SRR033728(GSM497073)
MALT (MALT413). (B cell)

SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)

SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)

RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)

DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)

SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)

SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)

SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)

SRR037936(GSM510474)
293cand1. (cell line)

SRR037935(GSM510473)
293cand3. (cell line)

SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)

DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)

SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)

GSM532874(GSM532874)
G699T. (cervix)

SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)

SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)

TAX577739(Rovira)
total RNA. (breast)

SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)

SRR037938(GSM510476)
293Red. (cell line)

SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR390723(GSM850202)
total small RNA. (cell line)

DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)

TAX577579(Rovira)
total RNA. (breast)

SRR038857(GSM458540)
D20. (cell line)

SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)

SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)

TAX577744(Rovira)
total RNA. (breast)

GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)

SRR029131(GSM416760)
MCF7. (cell line)

SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)

SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)

SRR033724(GSM497069)
L428 cell line (L428). (B cell)

SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)

SRR040008(GSM532893)
G727N. (cervix)

...................................................................................................................................GTGGGCAGGAGCAGGCCTGCGGGAGAGAGGGGACACCATAATGGTGGCATGTTGGGTTGTGTCTTCATGCTCCTGCCCCTTCCTT..................................

8.00

7.00

1.00

.......................................................................................................................................AAGGGGCAGGAGCATGAAGACACAACCCAACATGCCACCATTATGGTGTCCCCTCTCTCCCGCAGGCCTGCTCCTGCCCACTTTT..............................

8.00

0.00

8.00

.....................................................................................................................................................................................CTGCGGGAGAGAGGGGACA..................................................

5.00

1.00

2.00

1.00

..................................................................................................................................GTGGGCAGGAGCAGGCCTGCGGGAGAGAGGGGACACCATAATGGTGGCATGTTGGGTTGTGTCTTCATGCTCCTGCCCCTTCCTTC..................................

5.00

4.00

1.00

................................................................................................................................TGCTCCTGCCCCTTCCTTCCA.....................................................................................................

5.00

..................................................................................................................................................GTGGGCAGGAGCAGGCCTGCGGGAGAGAGGGGACACCATAATGGTGGCATGTTGGGTTGTGTCTTCATGC..................................

4.00

................TGCCCGAGGCCCAAAATAG.......................................................................................................................................................................................................................

4.00

0.00

4.00

......................................................................................................................................GTGGGCAGGAGCAGGCCTGCGGGAGAGAGGGGACACCATAATGGTGGCATGTTGGGTTGTGTCTTCATGCTCCTGCCCCTTC..................................

4.00

................................AGTTCAGAGCTTGAGCTG........................................................................................................................................................................................................

4.00

0.00

2.00

1.00

.....................................................................................................................................................................................AGGCCTGCGGGAGAGAGGGGACA..............................................

3.00

............................................................ACGCTACTGTGAGCACTTTA..........................................................................................................................................................................

3.00

.......................................................................................................................................AAGGGGCAGGAGCATGAAGACACAACCCAACATGCCACCATTATGGTGTCCCCTCTCTCCCGCAGGCCTGCTCCTGCCCACTTT...............................

3.00

0.00

3.00

.......................................................................................................................................AAGGGGCAGGAGCATGAAGACACAACCCAACATGCCACCATTATGGTGTCCCCTCTCTCCCGCAGGCCTGCTCCTGCCCACG.................................

3.00

0.00

3.00

.........................................................................................................................................................TGGCATGTTGGGTTGTGTC..............................................................................

2.00

1.00

.......................................................................................................................................AAGGGGCAGGAGCATGAAGACACAACCCAACATGCCACCATTATGGTGTCCCCTCTCTCCCGCAGGCCTGCTCCTGCCCACTT................................

2.00

0.00

2.00

...................................................................................................................................AAGGAAGGGGCAGGAGCATGAAGACACAACCCAACATGCCACCATTATGGTGTCCCCTCTCTCCCGCAGGCCTGCTCCTGCCCACT.................................

1.00

0.00

1.00

...........................................................................................................................................................TGGTGGCATGTTGGGTTGTG...........................................................................

1.00

...............................................................................................................................TGCTCCTGCCCCTTCCTTCCAG.....................................................................................................

1.00

.........................................................................GTAGCGTGGCACAAAGAAT..............................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................TGGTGGCATGTTGGGTTGTGTC...........................................................................

1.00

............................................................GCTACTGTGAGCACTTTA............................................................................................................................................................................

1.00

0.00

1.00

................................AGTTCAGAGCTTGAGTCTG.......................................................................................................................................................................................................

1.00

0.00

1.00

...............AGCTCTGAACTGTTTGGGCCTCGGGCAG...............................................................................................................................................................................................................

1.00

.................................................................................CCTGGCGGGATGATGACTTTGTGC.................................................................................................................................................

1.00

...........................................................................................ATCATCCCGCCAGGATGAGT...........................................................................................................................................

1.00

0.00

1.00

.................................................................................................................................TGCTCCTGCCCCTTCCTTCC.....................................................................................................

1.00

............................................................................................................................................................TGGTGGCATGTTGGGTTGT...........................................................................

1.00

.....................................................................................................................................................................................TGCGGGAGAGAGGGGACA...................................................

1.00

..................CAAGCTCTGAACTGTTTGGGCCTCGGG.............................................................................................................................................................................................................

1.00

......................................................................................TGGCGGGATGATGACTT...................................................................................................................................................

1.00

...................................................................................................................................................................................CAGGCCTGCGGGAGAGAGGGGACACC.............................................

1.00

.............................................................................................................................................................ACCATAATGGTGGCATGTTGGGTTG....................................................................

1.00

.......................................................................................................................................................................................TCCCCTCTCTCCCGCAGTA................................................

1.00

0.00

1.00

...............................................................................................................................CTGGAAGGAAGGGGCAGGAGCAA....................................................................................................

1.00

0.00

1.00

0.00

1.00

.....................................................................................................................................................................................TGTCCCCTCTCTCCCGCAA..................................................

1.00

0.00

1.00

.............................................................................................................................................................TGGTGGCATGTTGGGTTG...........................................................................

1.00

0.50

.................................AGAACTCAAGCTCTGAAC.......................................................................................................................................................................................................

1.00

0.33