ID: uc003ork.2_intron_2_0_chr6_41884678_r.3p
GENE: (1)
chr6:41884628-41884877-


(2)
B-CELL
(1)
BRAIN
(2)
BREAST
(9)
CELL-LINE
(2)
CERVIX
(3)
HEART
(2)
HELA
(1)
OTHER
(1)
RRP40.ip
(29)
SKIN
(1)
UTERUS

Sense strand
ATGAGCCACCACGCCTGGCCAAAAAAATTTTTTTTAATTAAAAATAATAATAAAGTTGCAGGGATTGGGAGACGGTCAGAGTAGGTAATTTCCAAGATAACTTTTGGCCCTGATGAGCTGTGATGCTGTGGGCGAGTGAATGGCTCAGTGAGCACACGTGTGTCTCTGGATAACTGACGATTTGGTGCTCTCCTTTCCAGTGTGTCCCAGATGCCTGTGGCCGAGGGCAAGAGTGTTCAGCAAACCGTAG
.....................................................((((.(((((.((..(((...(((.(((........)))...)))..)))..)))))))...))))(((.((((.(((((.........)))))...))))))).............................................................................................
..................................................51.........................................................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR343337SRR343336SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR189783SRR189785SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189782SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR040018(GSM532903)
G701N. (cervix)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR189786GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343334SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343335SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................................GAATGGCTCAGTGAGGC................................................................................................1717.000.009.007.00-------------------------1.00---------------------------------
........................................................................................................................................TGAATGGCTCAGTGAGG.................................................................................................17213.006.00--2.002.00-1.00----1.002.00----1.00-1.00-----1.00----1.00---1.00---------------------------
........................................................................................................................................TGAATGGCTCAGTGAGGCG...............................................................................................1929.006.00--3.001.00--2.00--------1.00---1.00--------1.00--------------------------------
........................................................................................................................................TGAATGGCTCAGTGAG..................................................................................................1626.006.00--0.50----2.50--0.50-----0.500.50-----------------------------0.500.500.50-----------
.........................................................................................................................................GAATGGCTCAGTGAGGCG...............................................................................................184.000.001.002.00----------1.00------------------------------------------------
........................................................................................................................................TGAATGGCTCAGTGAGGCGT..............................................................................................2024.006.00-------1.00----------------------------1.00---1.001.00-------------------
.........................................................................................................................................GAATGGCTCAGTGAGGCCT..............................................................................................194.000.00-----2.00--2.00----------------------------------------------------
........................................................................................................................................TGAATGGCTCAGTGAGGC................................................................................................1823.006.00--1.001.00--------1.00------------------------------------------------
..........................................................CAGGGATTGGGAGACGT...............................................................................................................................................................................1723.001.50----3.00--------------------------------------------------------
........................................................................................................................................TGAATGGCTCAGTGAGGCTT..............................................................................................2022.006.00------1.00--1.00---------------------------------------------------
........................................................................................................................................TGAATGGCTCAGTGAGGCCT..............................................................................................2022.006.00-----1.00--------------------------------1.00----------------------
..........................................................CAGGGATTGGGAGACGTC..............................................................................................................................................................................1822.001.50----------1.00---1.00----------------------------------------------
...........................................................AGGGATTGGGAGACGTTA.............................................................................................................................................................................182.000.00----2.00--------------------------------------------------------
.........................................................GCAGGGATTGGGAGACGG...............................................................................................................................................................................1812.002.00-------------2.00-----------------------------------------------
.....................................................................................................................................GAGTGAATGGCTCAGTGAGGC................................................................................................212.000.00--------1.001.00---------------------------------------------------
..........................................................CAGGGATTGGGAGACG................................................................................................................................................................................1621.501.50---1.00-------0.50-------------------------------------------------
.............................................................................................................................................................GTGTGTCTCTGGATATAG...........................................................................181.000.00-------------------------------------------1.00-----------------
...............................................................................AGTAGGTAATTTCCAGGCT........................................................................................................................................................191.000.00---------1.00---------------------------------------------------
..........................................................CAGGGATTGGGAGACGTCG.............................................................................................................................................................................1921.001.50-----------------------1.00-------------------------------------
.....................................................................AGACGGTCAGAGTAGCTG...................................................................................................................................................................181.000.00-------------------------------------1.00-----------------------
...........................................................AGGGATTGGGAGACGGTCAGAGTAG......................................................................................................................................................................2511.001.00--------------------1.00----------------------------------------
......................................................................................................................TGTGATGCTGTGGGCGAGTGAATGGCTCAG......................................................................................................3011.001.00--------------1.00----------------------------------------------
...........................................................AGGGATTGGGAGACGTTAC............................................................................................................................................................................191.000.00---------------------1.00---------------------------------------
...........................................................AGGGATTGGGAGACGT...............................................................................................................................................................................161.000.00---1.00---------------------------------------------------------
...................................................................................................................................................................................................................TGCCTGTGGCCGAGGGCAAG...................2011.001.00----------------------1.00--------------------------------------
......................................................................................................TTTGGCCCTGATGAGCTGTGATGCTGTGG.......................................................................................................................2911.001.00--------------------------1.00----------------------------------
...................................................................................................................................................................CTCTGGATAACTGACGATTTGGTG...............................................................2411.001.00----------------------------------1.00--------------------------
...........................................................AGGGATTGGGAGACGTT..............................................................................................................................................................................171.000.00------------------------------1.00------------------------------
............................................................GGGATTGGGAGACGGTCTCCC.........................................................................................................................................................................211.000.00------1.00------------------------------------------------------
.............................................................................................................CTGATGAGCTGTGATGCCAT.........................................................................................................................201.000.00-------------------------------1.00-----------------------------
.....................................................................................................................CTGTGATGCTGTGGGAAT...................................................................................................................181.000.00---------------1.00---------------------------------------------
.........................................................................................................................GATGCTGTGGGCGAGTGC...............................................................................................................181.000.00---------------------------------------1.00---------------------
....................................................................................................................................CGAGTGAATGGCTCAAGC....................................................................................................181.000.00--------------------------------1.00----------------------------
........................................................................................................................................TGAATGGCTCAGTGA...................................................................................................1560.330.33------------0.17----------------------------------------------0.17-

Antisense strand
ATGAGCCACCACGCCTGGCCAAAAAAATTTTTTTTAATTAAAAATAATAATAAAGTTGCAGGGATTGGGAGACGGTCAGAGTAGGTAATTTCCAAGATAACTTTTGGCCCTGATGAGCTGTGATGCTGTGGGCGAGTGAATGGCTCAGTGAGCACACGTGTGTCTCTGGATAACTGACGATTTGGTGCTCTCCTTTCCAGTGTGTCCCAGATGCCTGTGGCCGAGGGCAAGAGTGTTCAGCAAACCGTAG
.....................................................((((.(((((.((..(((...(((.(((........)))...)))..)))..)))))))...))))(((.((((.(((((.........)))))...))))))).............................................................................................
..................................................51.........................................................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR343337SRR343336SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR189783SRR189785SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189782SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR040018(GSM532903)
G701N. (cervix)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR189786GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343334SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343335SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................TTGCAGGGATTGGGAAG.................................................................................................................................................................................. 174.000.003.001.00-----------------------------------------------------------
............................ATTATTATTTTTAATTAAAAAAA....................................................................................................................................................................................................... 2344.004.00------------------0.250.25------------------------0.500.750.50-----0.250.250.250.250.250.250.25--
......................................TAAAAATAATAATAAAGTTTAG.............................................................................................................................................................................................. 221.000.00------------------------------------------1.00------------------
.........................................AAATAATAATAAAGTTATTG............................................................................................................................................................................................. 201.000.00-------------------------1.00-----------------------------------
...........................................................................................................................................................................................................................................TTCAGCAAACCGTAGG 161.000.00-----------------------------------1.00-------------------------
........CCACGCCTGGCCAAAAAGGGC............................................................................................................................................................................................................................. 211.000.00-----------------1.00-------------------------------------------
............................TATTATTTTTAATTAAAAAAA......................................................................................................................................................................................................... 2170.430.43---0.14------------------------------------------0.14-------------0.14
..AATTTTTTTGGCCAGGCGTGGTGGCTC............................................................................................................................................................................................................................. 2730.330.33--------------------------------------------------0.33----------
.............................ATTATTATTTTTAATTAAAAAA....................................................................................................................................................................................................... 2270.290.29---------------------------------------------------0.29---------
............................TTTTTTTAATTAAAAATAATAATTGCT................................................................................................................................................................................................... 270.250.00--------------------------------------------0.25----------------