ID: uc003orj.2_intron_2_0_chr6_41880839_r.3p
GENE: (2)
chr6:41880789-41881038-


(1)
AGO1.ip 		(14)
B-CELL 		(2)
BRAIN 		(17)
BREAST 		(31)
CELL-LINE 		(7)
CERVIX 		(2)
FIBROBLAST 		(7)
HEART 		(2)
HELA 		(1)
KIDNEY 		(12)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(23)
SKIN 		(1)
TESTES 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
GAGCTTCAGTTTTGCTGGTTACTGGCTCTGTGCCTTTAGATCAGTGATTCTCACACTTGACCAGCATTAGCATCATCTGAAAGGCTTGTTACCACACAGATTGCTAGACCCCACGCCAAAGTTTCTGACTTAGTAGTTTGGAGGAGAGTAGACAATAATTTGCATTTCCCCCCACCTTTTTTTTTTTTTTTTTGAGACAGGGTCTCTCTGTCACCCAGGCTGGAGTGCAATGGCATGATCATAGCTCACT
..................................................................((((((..(((((...((.......))...))))))))))).............(((((.((((....)))).((.((((((((((......))))).))))).)).....................)))))....................................................
..............................................................63.......................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577743(Rovira)
total RNA. (breast)		SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029130(GSM416759)
DLD2. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR343337SRR343334SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR029127(GSM416756)
A549. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029124(GSM416753)
HeLa. (hela)		SRR040030(GSM532915)
G013N. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR343336SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040016(GSM532901)
G645N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR038855(GSM458538)
D10. (cell line)		GSE20417(GSM514985)
Colon and lung cancer pool. 		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR343335SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577745(Rovira)
total RNA. (breast)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR040027(GSM532912)
G220T. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR029125(GSM416754)
U2OS. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)
...................................................................TAGCATCATCTGAAATCGG....................................................................................................................................................................19458.000.00-89.0092.00---18.0011.009.00-14.0011.0010.00--9.007.0010.009.007.005.003.005.005.005.006.00-4.00-4.004.00--3.003.003.004.003.003.003.001.003.001.003.002.003.001.003.001.002.003.003.002.001.001.00-1.002.002.001.002.00-1.002.001.001.001.00-1.001.002.002.002.002.002.00-1.001.001.00-1.001.001.00-1.001.00-1.001.00-1.00--1.001.001.001.001.00-1.001.001.001.001.001.001.001.001.001.001.001.001.001.00----1.00--1.001.001.001.00-1.001.001.001.00-1.001.001.001.00
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTATAG......................................................2589.000.0044.00--19.0015.0010.00--------------------1.00-----------------------------------------------------------------------------------------------------------
...................................................................TAGCATCATCTGAAATCG.....................................................................................................................................................................1885.000.00-14.006.00---8.0013.0012.00-1.001.00-2.00--1.00---4.005.00------1.00----1.001.00--1.00--1.00-1.00-1.00----1.00--1.00--2.00---1.00-1.00---1.00--1.001.00----------------1.00-------------------------------------1.00---------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTATAG.........................................................2263.000.0032.00--13.0016.002.00--------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTATAG...........................................................2062.000.0030.00--13.0013.006.00--------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTATAG............................................................1939.000.0018.00--5.008.008.00--------------------------------------------------------------------------------------------------------------------------------
...................................................................TAGCATCATCTGAAATCAG....................................................................................................................................................................1916.000.00--1.00----------7.00--------------2.00--1.004.00-----------------------------------------------------------------------------------1.00-----------------
...................................................................TAGCATCATCTGAAATCGT....................................................................................................................................................................199.000.00-3.002.00------------1.00-------------------------------------1.001.00------------------------------------1.00------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTATAT......................................................258.000.005.00--1.001.001.00--------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTAT........................................................237.000.00---5.001.00---------------------1.00-----------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTATAT..........................................................217.000.004.00--3.00----------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTATAT.........................................................227.000.002.00--2.00-3.00--------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTATG.......................................................247.000.002.00--5.00----------------------------------------------------------------------------------------------------------------------------------
...................................................................TAGCATCATCTGAAATCGA....................................................................................................................................................................196.000.00------------1.00------1.00----------1.00----------------------1.00----------1.00---------------------------------1.00-----------------------------------
...................................................................TAGCATCATCTGAAACCAG....................................................................................................................................................................195.000.00-------------------------------4.00---------------------------------------------------------1.00--------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTATA.......................................................244.000.003.00----1.00--------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTATT.......................................................244.000.001.00--2.00-1.00--------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................CCCCCACCTTTTTTTTTTTTTTTTTAAT......................................................283.000.00---3.00----------------------------------------------------------------------------------------------------------------------------------
...................................................................TAGCATCATCTGAAATAGG....................................................................................................................................................................193.000.00--------1.00---1.00----------------1.00--------------------------------------------------------------------------------------------------------
...................................................................TAGCATCATCTGAAATCTT....................................................................................................................................................................193.000.00--1.00--------------------------------1.00------------------------------1.00-------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTATGG.........................................................223.000.001.00---1.001.00--------------------------------------------------------------------------------------------------------------------------------
...................................................................TAGCATCATCTGAAATCAT....................................................................................................................................................................192.000.00-------------1.00-----------------------------------------------1.00------------------------------------------------------------------------
...................................................................TAGCATCATCTGAAATCTA....................................................................................................................................................................192.000.00------------------------------------------1.00-------------------1.00-----------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTACAG......................................................252.000.00----1.001.00--------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTATGG......................................................252.000.001.00----1.00--------------------------------------------------------------------------------------------------------------------------------
...................................................................TAGCATCATCTGAAATTGG....................................................................................................................................................................192.000.00------1.00--------------1.00----------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTATTG..........................................................212.000.002.00-------------------------------------------------------------------------------------------------------------------------------------
...................................................................TAGCATCATCTGAAATCA.....................................................................................................................................................................182.000.00-------------------1.00---1.00--------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTCTG.......................................................242.000.00---1.00-----1.00----------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGTCGA............................................272.000.00-------------------------------------------------------------------2.00------------------------------------------------------------------
.............................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTGAGCGG...................................................262.000.00---------2.00----------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTATTG.........................................................222.000.00---1.00-1.00--------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................CATGATCATAGCTCACGTT192.000.00------------------------------------------------2.00-------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTATAA......................................................252.000.001.00---1.00---------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................TCTCTGTCACCCAGGCTGGCCTC.......................232.000.00--------------2.00-----------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTCAG.......................................................242.000.001.00--1.00----------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTACAG..........................................................212.000.00----2.00---------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................GAGGAGAGTAGACAAAAAA...........................................................................................191.000.00---------------------------1.00----------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................TCTCTGTCACCCAGGCTGGAGTGCATCGG.................291.000.00---------1.00----------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................TGACTTAGTAGTTTGGACAG.........................................................................................................201.000.00----------------1.00---------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................TCTCTGTCACCCAGGCTGGAGTGCGGC...................271.000.00---------1.00----------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTGATAAG...................................................261.000.00--------------------------1.00-----------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TCTCTCTGTCACCCAGGCTGGTAA........................241.000.00------------------------1.00-------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTCGG........................................................231.000.001.00-------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTACG.......................................................241.000.001.00-------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTATCG......................................................251.000.001.00-------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TTTTTTTTTTTTTTTTTGAGACAGGGCTAT............................................301.000.00--------------------------1.00-----------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTATAT............................................................191.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................GAGGAGAGTAGACAAAAA............................................................................................181.000.00----------------------1.00---------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................CCCCACCTTTTTTTTTTTTTTAAG.........................................................241.000.00--------------------------1.00-----------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTGTAGG....................................................251.000.00--------------1.00-----------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTACAG............................................................191.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
...................................................................TAGCATCATCTGAAATTG.....................................................................................................................................................................181.000.00-------------1.00------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................CAATGGCATGATCATAG......1701.001.00---------------------------------------------------------------------------1.00----------------------------------------------------------
...................................................................TAGCATCATCTGAAACCGG....................................................................................................................................................................191.000.00----------------------------------------------1.00---------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................CCCAGGCTGGAGTGCAATGGCATGATCAGCT......311.000.00---------------------------------------------------------------------------------------------------------------------------------1.00----
...........................................................................................................................................................................CCACCTTTTTTTTTTTTATAA..........................................................211.000.001.00-------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................CTTTTTTTTTTTTTTTTTGAGACAGGGTCCCC...........................................321.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
..................................................................TTAGCATCATCTGAAATCGG....................................................................................................................................................................201.000.00-1.00------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTGTTG.....................................................241.000.00--------------1.00-----------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGACG.............................................261.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTCGG.......................................................241.000.001.00-------------------------------------------------------------------------------------------------------------------------------------
...................................................................TAGCATCATCTGAAATAGT....................................................................................................................................................................191.000.00--------------------------------------------------------1.00-----------------------------------------------------------------------------
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGGCGG............................................271.000.00---------1.00----------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTACG............................................................191.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................CCTTTTTTTTTTTTTTTTTGAATAG...................................................251.000.001.00-------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTGAAG.....................................................241.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TTTTTTTTTTTTTGAGACAGGGGTTC............................................261.000.00--------------1.00-----------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTAGT.......................................................241.000.00----1.00---------------------------------------------------------------------------------------------------------------------------------
...................................................................TAGCATCATCTGAAATA......................................................................................................................................................................171.000.00--------1.00-----------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTATTG......................................................251.000.001.00-------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTGTTTT....................................................251.000.001.00-------------------------------------------------------------------------------------------------------------------------------------
...................................................................TAGCATCATCTGAAATAGC....................................................................................................................................................................191.000.00-----------1.00--------------------------------------------------------------------------------------------------------------------------
...................................................................TAGCATCATCTGAAATAG.....................................................................................................................................................................181.000.00-----------------------------------------------------------------------------------1.00--------------------------------------------------
.............................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTGAACC....................................................251.000.00---------1.00----------------------------------------------------------------------------------------------------------------------------
............................................................................................CACACAGATTGCTAGACCC...........................................................................................................................................1911.001.00-------------------------------------------------------------------------------------------------------------------1.00------------------
...................................................................TAGCATCATCTGAAATCGC....................................................................................................................................................................191.000.00----------------------------------------1.00---------------------------------------------------------------------------------------------
...................................................................TAGCATCATCTGAAACTG.....................................................................................................................................................................181.000.00----------------------------------------------1.00---------------------------------------------------------------------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTTGAGACAGGGACCG............................................281.000.00---------1.00----------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTACA.......................................................241.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................AGGGTCTCTCTGTCACCCAGGCTGGTGC........................281.000.00---------1.00----------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................ACCCAGGCTGGAGTGCAATGGA................221.000.00------------------------------------------------------------------------------------------------------------------1.00-------------------
..........................................................................................................................................................................................................................................ATGATCATAGCTCACGTT181.000.00-------------------------------------------------------------------------------1.00------------------------------------------------------
....................................................................................................................................................................................................................ACCCAGGCTGGAGTGCAATGGCATGACCCC........301.000.00--------------1.00-----------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................CCTTTTTTTTTTTTTTTTTGAGCGGG..................................................261.000.00---------1.00----------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTCCG........................................................231.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTGTGCG....................................................251.000.00---------1.00----------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTCTAG......................................................251.000.00----1.00---------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTGAGGCT...................................................261.000.00---------1.00----------------------------------------------------------------------------------------------------------------------------
...................................................................TAGCATCATCTGAAATCCG....................................................................................................................................................................191.000.00----------------------------1.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTTGAATAG...................................................281.000.00----1.00---------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTCATT......................................................251.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................ACAGGGTCTCTCTGTCACCCAGGCGGG...........................271.000.00--------------1.00-----------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTAGCG......................................................251.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
...................................................................TAGCATCATCTGAAATGG.....................................................................................................................................................................181.000.00-----------------------------------------------------------------------------------------------------------------1.00--------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTCG........................................................231.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTAGC.......................................................241.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTAGAG...........................................................201.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTATAA............................................................191.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTTTTTTTTTTTTTTTGAGACAGGGGCCG............................................291.000.00--------------1.00-----------------------------------------------------------------------------------------------------------------------
.............................................................................................ACACAGATTGCTAGACCC...........................................................................................................................................1830.330.33--------------------------------------0.33-----------------------------------------------------------------------------------------------

Antisense strand
GAGCTTCAGTTTTGCTGGTTACTGGCTCTGTGCCTTTAGATCAGTGATTCTCACACTTGACCAGCATTAGCATCATCTGAAAGGCTTGTTACCACACAGATTGCTAGACCCCACGCCAAAGTTTCTGACTTAGTAGTTTGGAGGAGAGTAGACAATAATTTGCATTTCCCCCCACCTTTTTTTTTTTTTTTTTGAGACAGGGTCTCTCTGTCACCCAGGCTGGAGTGCAATGGCATGATCATAGCTCACT
..................................................................((((((..(((((...((.......))...))))))))))).............(((((.((((....)))).((.((((((((((......))))).))))).)).....................)))))....................................................
..............................................................63.......................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577743(Rovira)
total RNA. (breast)		SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029130(GSM416759)
DLD2. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR343337SRR343334SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR029127(GSM416756)
A549. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029124(GSM416753)
HeLa. (hela)		SRR040030(GSM532915)
G013N. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR343336SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040016(GSM532901)
G645N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR038855(GSM458538)
D10. (cell line)		GSE20417(GSM514985)
Colon and lung cancer pool. 		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR343335SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577745(Rovira)
total RNA. (breast)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR040027(GSM532912)
G220T. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR029125(GSM416754)
U2OS. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)
.........................................................................................................................................................................................................................GGCTGGAGTGCAATGGCATGATAGGC....... 262.000.00---------2.00----------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................ACCCAGGCTGGAGTGCAATGGCATGATCGAG....... 312.000.00--------------2.00-----------------------------------------------------------------------------------------------------------------------
.....................................................................TCTGTGTGGTAACAAGCCTTTCAGATGATGC...................................................................................................................................................... 3111.001.00----------------1.00---------------------------------------------------------------------------------------------------------------------
........................................................................................................................................TTTGGAGGAGAGTAGATAG............................................................................................... 191.000.00----------------------------1.00---------------------------------------------------------------------------------------------------------
...............................................................................................................................................GAGAGTAGACAATAATTCC........................................................................................ 191.000.00--------------------------1.00-----------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................GGCTGGAGTGCAATGGCATGAAGGC........ 251.000.00---------1.00----------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................CCACCTTTTTTTTTTTTTTTTTTTGG..................................................... 261.000.00-----------------------------------------------------------------------------------------------------------------------1.00--------------
.................................................................................................................................................................................................................GTCACCCAGGCTGGAGTGCAAC................... 221.000.00--------------------------------------------------------------------------------------------1.00-----------------------------------------
......................................................................................................................................................................................................................CCAGGCTGGAGTGCAATGGCATGATCAATT...... 301.000.00----------------------------------------------------------------------------------------------------------------------1.00---------------
........................................................................................................................................................................................................GGTCTCTCTGTCACCCAGGCTGGAGTGCAGTC.................. 321.000.00--------------1.00-----------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................TCTCTGTCACCCAGGCTGGAGTGCAATTCA................ 301.000.00---------1.00----------------------------------------------------------------------------------------------------------------------------
.................................................GCTGGTCAAGTGTGAG......................................................................................................................................................................................... 1620.500.50---------------------------------------------------------------------------0.50----------------------------------------------------------