ID: uc003orj.2_intron_0_0_chr6_41875026_r.5p
GENE: (4)
chr6:41876807-41877056-


(1)
AGO2.ip
(1)
BREAST
(15)
CELL-LINE
(2)
CERVIX
(2)
LIVER
(1)
OTHER
(1)
RRP40.ip
(3)
SKIN
(1)
XRN.ip

Sense strand
AGGTGGGCACGGTCACAATGGGGCCCAGTGCCCGGGGCATCTCTGTGGAGGTAAGACCTTGGTGAAAATAGGAGCAGGATGTTCTGAGGGGGCTGCTTAGCAAAGGGCTCTGAAGATTTTCCAGTTCTTCTCTTTTTTTTTTTTTGAGACAGAGTCTTGTTCTGTCACCCAGGCTGGAATGCAATGGCACAATCTTGGCACACTGTAGCCTCGACCTCCAGGGCTCAAGTGATCCTTCCGCCTCAGTCTC
.........................................................(((((.(((((.(((((.(((((..(((...((((((.(((....)))))))))..))).......))))).))))).)))))...)))))......................................................................................................
..................................................51...................................................................................................152................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM956925PAZD5SRR037937(GSM510475)
293cand2. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR040025(GSM532910)
G613T. (cervix)
TAX577742(Rovira)
total RNA. (breast)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................CTTCTCTTTTTTTTTTTTTAAG......................................................................................................225.000.00-3.00--1.001.00-------------------
...............................................................................................................................TTCTCTTTTTTTTTTTTTGAGACAGAGTCTAG...........................................................................................325.000.00--2.00-2.001.00-------------------
..............................................................................................................................CTTCTCTTTTTTTTTTTTTATG......................................................................................................224.000.00-1.002.00-1.00--------------------
..............................................................................................................................CTTCTCTTTTTTTTTTTTCCAG......................................................................................................224.000.00-2.001.00--1.00-------------------
..............................................................................................................................CTTCTCTTTTTTTTTTTTTAAAG.....................................................................................................233.000.00--2.00-1.00--------------------
.............................................................................................................................TCTTCTCTTTTTTTTTTTTTGAGACGG..................................................................................................273.000.003.00------------------------
..............................................................................................................................CTTCTCTTTTTTTTTTTTAAAG......................................................................................................222.000.00-1.00--1.00--------------------
............................................................................................................................TTCTTCTCTTTTTTTTTAGT..........................................................................................................202.000.00---2.00---------------------
............................................................................................................................TTCTTCTCTTTTTTTTTTTTTAAG......................................................................................................242.000.00-1.00--1.00--------------------
............................................................................................................................TTCTTCTCTTTTTTTTTTTTTGCAG.....................................................................................................252.000.001.00--1.00---------------------
...................................................................................................................................................................................................TGGCACACTGTAGCCTCGACCTCCAGGGC..........................2912.002.002.00------------------------
......................................................GACCTTGGTGAAAATAGTA.................................................................................................................................................................................191.000.00--------------------1.00----
...............................................................................................................................TTCTCTTTTTTTTTTTTTGTTGT....................................................................................................231.000.00---1.00---------------------
.............................................................................................................................TCTTCTCTTTTTTTTTTTTCGAG......................................................................................................231.000.001.00------------------------
.................................................................................................................................CTCTTTTTTTTTTTTTGAGACAGAGTCTAT...........................................................................................301.000.00-----1.00-------------------
................................................................................................................................TCTCTTTTTTTTTTTTTGAAGC....................................................................................................221.000.00---1.00---------------------
................................................................................................................................TCTCTTTTTTTTTTTTTGTCG.....................................................................................................211.000.00----1.00--------------------
..........................................................................................................................................................TCTTGTTCTGTCACCCAGGCTGGACCGA....................................................................281.000.00---1.00---------------------
.........................................................................................................................................................................CAGGCTGGAATGCAATGGAGAA...........................................................221.000.00-------------1.00-----------
.............................................................................................................................TCTTCTCTTTTTTTTTTGCTC........................................................................................................211.000.001.00------------------------
.............................................................................................................................TCTTCTCTTTTTTTTTTTTTGGGAC....................................................................................................251.000.001.00------------------------
............................................................................................................................TTCTTCTCTTTTTTTTTTTTTATTG.....................................................................................................251.000.00--1.00----------------------
............................................................................................................................TTCTTCTCTTTTTTTTTTTTTGCCG.....................................................................................................251.000.00---1.00---------------------
..............................................................................................................................CTTCTCTTTTTTTTTTTTCAAG......................................................................................................221.000.00-1.00-----------------------
..........................................................................................................................AGTTCTTCTCTTTTTTTTTTC...........................................................................................................211.000.001.00------------------------
..............................................................................................................................CTTCTCTTTTTTTTTTTTCCCG......................................................................................................221.000.00-1.00-----------------------
.............................................................................................................................TCTTCTCTTTTTTTTTTTTTGGGG.....................................................................................................241.000.001.00------------------------
..............................................................................................................................CTTCTCTTTTTTTTTTTTTATTG.....................................................................................................231.000.00----1.00--------------------
...............................................................................................................................TTCTCTTTTTTTTTTTTTGGGGA....................................................................................................231.000.00----1.00--------------------
...........................................................................................................................GTTCTTCTCTTTTTTTTTTTTTGAGAC....................................................................................................2711.001.001.00------------------------
.............................................................................................................................TCTTCTCTTTTTTTTTAAAG.........................................................................................................201.000.00--1.00----------------------
..............................................................................................................................CTTCTCTTTTTTTTTTTTACAG......................................................................................................221.000.00--1.00----------------------
.............................................................................................................................TCTTCTCTTTTTTTTTTTAAG........................................................................................................211.000.00-----1.00-------------------
.............................................................................................................................TCTTCTCTTTTTTTTTTTTTAAG......................................................................................................231.000.00-1.00-----------------------
.............................................................................................................................TCTTCTCTTTTTTTTTTTTTAGG......................................................................................................231.000.00--1.00----------------------
.............................................................................................................................TCTTCTCTTTTTTTTTTTTTCGG......................................................................................................231.000.001.00------------------------
.............................................................................................................................TCTTCTCTTTTTTTTTTTTTGCC......................................................................................................231.000.00---1.00---------------------
................................................................................GTTCTGAGGGGGCTGGCTA.......................................................................................................................................................191.000.00-------------------1.00-----
.............................................................................................................................TCTTCTCTTTTTTTTTTTTTGGCTT....................................................................................................251.000.001.00------------------------
............................................................................................................................TTCTTCTCTTTTTTTTTTGCCG........................................................................................................221.000.001.00------------------------
............................................................................................................................TTCTTCTCTTTTTTTTTTTTTAT.......................................................................................................231.000.00-----1.00-------------------
...............................................................................................................................TTCTCTTTTTTTTTTTTTGAGACAGTG................................................................................................271.000.001.00------------------------
.......................................................................................................................................................................................ATGGCACAATCTTGGCACACTGTAG..........................................2511.001.00----------1.00--------------
............................................................................................................................TTCTTCTCTTTTTTTTTTCGG.........................................................................................................211.000.001.00------------------------
...........................................................................................................................................................................................................................AGGGCTCAAGTGATCCTTCCGCCTCAGT...2811.001.00---------1.00---------------
.............................................................................................................................TCTTCTCTTTTTTTTTTTTTGAGAAGG..................................................................................................271.000.001.00------------------------
..............................................................................................................................CTTCTCTTTTTTTTTTTTTAACG.....................................................................................................231.000.00-----1.00-------------------
...............................................................................................................................TTCTCTTTTTTTTTTTTTGACG.....................................................................................................221.000.001.00------------------------
.......................................................................................................................................................................CCCAGGCTGGAATGCAATGGCA.............................................................2201.001.00-------1.00-----------------
............................................................................................................................TTCTTCTCTTTTTTTTTTTTTGGTG.....................................................................................................251.000.001.00------------------------
..............................................................................................................................CTTCTCTTTTTTTTTTTTTACTG.....................................................................................................231.000.00--1.00----------------------
..............................................................................................................................CTTCTCTTTTTTTTTTTTATG.......................................................................................................211.000.00----1.00--------------------
............................................................................................................................TTCTTCTCTTTTTTTTTTTTTAAAT.....................................................................................................251.000.00-1.00-----------------------
..............................................................................................................................CTTCTCTTTTTTTTTTTTTGTCAG....................................................................................................241.000.00-1.00-----------------------
.............................................................................................................................TCTTCTCTTTTTTTTTTTTCG........................................................................................................211.000.00-1.00-----------------------
.....................................................................................................................................................................................CAATGGCACAATCTTGGGT..................................................191.000.00-----------------------1.00-
.............................................................................................................................TCTTCTCTTTTTTTTTTTTTCATG.....................................................................................................241.000.001.00------------------------
.............................................................................................................................TCTTCTCTTTTTTTTTTTTTCG.......................................................................................................221.000.00-1.00-----------------------
............................................................................................................................TTCTTCTCTTTTTTTTTTTTAAAG......................................................................................................241.000.00--1.00----------------------
...............................................................................................................................................................TTCTGTCACCCAGGCTGGACCGC....................................................................231.000.001.00------------------------
..........................................................................................................................................................................................................................CAGGGCTCAAGTGATCCTTCCG..........2250.200.20------------------------0.20
............................................................................................................................TTCTTCTCTTTTTTTTTTTTTGAGACTG..................................................................................................2870.140.14---0.14---------------------
............................................................................................................................TTCTTCTCTTTTTTTTTTTTTGAGACAG..................................................................................................2870.140.140.14------------------------
............................................................................................................................TTCTTCTCTTTTTTTTTTTTTGAGAC....................................................................................................2670.140.140.14------------------------

Antisense strand
AGGTGGGCACGGTCACAATGGGGCCCAGTGCCCGGGGCATCTCTGTGGAGGTAAGACCTTGGTGAAAATAGGAGCAGGATGTTCTGAGGGGGCTGCTTAGCAAAGGGCTCTGAAGATTTTCCAGTTCTTCTCTTTTTTTTTTTTTGAGACAGAGTCTTGTTCTGTCACCCAGGCTGGAATGCAATGGCACAATCTTGGCACACTGTAGCCTCGACCTCCAGGGCTCAAGTGATCCTTCCGCCTCAGTCTC
.........................................................(((((.(((((.(((((.(((((..(((...((((((.(((....)))))))))..))).......))))).))))).)))))...)))))......................................................................................................
..................................................51...................................................................................................152................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM956925PAZD5SRR037937(GSM510475)
293cand2. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR040025(GSM532910)
G613T. (cervix)
TAX577742(Rovira)
total RNA. (breast)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................................................................ACAGAGTCTTGTTCTGTCACCCAGTTTT.......................................................................... 282.000.00------2.00------------------
.............................................................................................................................................................................................................................GGCTCAAGTGATCCTTCCGCCTG...... 232.000.002.00------------------------
.......................................................................................................................TCCAGTTCTTCTCTTTTTACA.............................................................................................................. 212.000.00--------2.00----------------
.......................................................................................................................................................................................................................CTCCAGGGCTCAAGTGATCCTACC........... 242.000.00---2.00---------------------
.............................................................................................................................................................................................................................GGCTCAAGTGATCCTTCCGCCTTGCG... 261.000.001.00------------------------
........................................................................................................................CCAGTTCTTCTCTTTTCAAA.............................................................................................................. 201.000.00------------1.00------------
...................................................................................................................................................GACAGAGTCTTGTTCCTT..................................................................................... 181.000.00----------------------1.00--
.................................................................................................................................................................................................................CTCGACCTCCAGGGCTAG....................... 181.000.00------------------1.00------
...............................................................................................................................................................TTCTGTCACCCAGGCTGGAATGCAATGTC.............................................................. 291.000.00--------------1.00----------
.....................................................................................................................................................CAGAGTCTTGTTCTGTCACCCACCAC........................................................................... 261.000.001.00------------------------
....................................................................................................................TTTTCCAGTTCTTCTCATA................................................................................................................... 191.000.00---------1.00---------------
...................................................................................................................................................................................................................CGACCTCCAGGGCTCCGA..................... 181.000.00-----------------1.00-------
....................................................................................................................................................................TCACCCAGGCTGGAATGAAG.................................................................. 201.000.00---------------------1.00---
.................................................................................................................................................................CTGTCACCCAGGCTGGAATGCACTAG............................................................... 261.000.00---1.00---------------------
..............................................................................................................................................................................................................................CGGAAGGATCACTTGAGC.......... 1801.001.00---------------1.00---------
......................................................................................................................................................................................................................CCTCCAGGGCTCAAGTC................... 171.000.00-------1.00-----------------
...........................................................................................................................GTTCTTCTCTTTTTTGACG............................................................................................................ 191.000.00-----------1.00-------------
................................................................................................TTAGCAAAGGGCTCTCAC........................................................................................................................................ 181.000.00----------------1.00--------
.........................................................................................................................................................................CAGGCTGGAATGCAATACTG............................................................. 201.000.001.00------------------------