ID: uc003oov.3_intron_1_0_chr6_39824247_f.5p
GENE: (2)
chr6:39824197-39824446+


(4)
B-CELL 		(9)
BRAIN 		(6)
BREAST 		(8)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(3)
HELA 		(1)
LIVER 		(1)
OTHER 		(3)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GCCCCATCCCGAACGCAGAGGAGCTCAACATCCGCTTTGCAGAGCTGGTGGTCAGTGAGAGGGTGGGGAGAGACAGTGACAATGGGGAGGAGGGTGGATGGAGAGGCAGAGCTGGACAGAGGGCAGGGCCCCTGTGCTGGGGTCTCCATCTCTCAAAACTCCTCTTGGGAGGAGATAGGCCCCCAGGACACCTCAGCTATGTTGGGGAACCAGAGTCTCTCACTGGGATGGACAGCATAAAGTGTGTCCC
..................................................((((.((................)).))))..........................................................................................................................................................................
..................................................51......................................................107.............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		TAX577746(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040036(GSM532921)
G243N. (cervix)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		TAX577579(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)
..................................................................................TGGGGAGGAGGGTGGATAGGT...................................................................................................................................................2112.000.0010.00-1.00---------------1.00----------------------
..................................................................................TGGGGAGGAGGGTGGATTGGT...................................................................................................................................................218.000.006.00-----------------------1.00--------1.00-------
..................................................................................TGGGGAGGAGGGTGGATAGTT...................................................................................................................................................214.000.002.00----------1.00---------------------------1.00-
..................................................................................TGGGGAGGAGGGTGGATAGG....................................................................................................................................................204.000.004.00----------------------------------------
.......................................................................................AGGAGGGTGGATGGAAAA.................................................................................................................................................183.000.00------3.00----------------------------------
..........GAACGCAGAGGAGCTCAACA............................................................................................................................................................................................................................2013.003.00-1.00-1.00-1.00-----------------------------------
..................................................................................TGGGGAGGAGGGTGGATTGTT...................................................................................................................................................213.000.00----1.00-----------1.00---1.00--------------------
..................................................................................TGGGGAGGAGGGTGGATGGTT...................................................................................................................................................212.000.00---1.00-------1.00-----------------------------
.........CGAACGCAGAGGAGCTCA...............................................................................................................................................................................................................................1812.002.00---1.00------------------------------------1.00
........................................................GAGAGGGTGGGGAGAGAAAAT.............................................................................................................................................................................212.000.00----------2.00------------------------------
.................................................................................ATGGGGAGGAGGGTGGAT.......................................................................................................................................................1812.002.00-1.00----------------------------------1.00----
.........CGAACGCAGAGGAGCTCAACATCCGC.......................................................................................................................................................................................................................2612.002.00-1.00------1.00--------------------------------
...................................................................................GGGGAGGAGGGTGGATGTA....................................................................................................................................................192.000.00-------------2.00---------------------------
....................................................................................GGGAGGAGGGTGGATAGGT...................................................................................................................................................192.000.00--------------1.00-----------------1.00--------
....................................................................................GGGAGGAGGGTGGATAGT....................................................................................................................................................182.000.00------------1.00--1.00-------------------------
..................................................................................TGGGGAGGAGGGTGGATTG.....................................................................................................................................................191.000.00-1.00---------------------------------------
...................................................................................GGGGAGGAGGGTGGATTGTT...................................................................................................................................................201.000.001.00----------------------------------------
..........GAACGCAGAGGAGCTCAACATCC.........................................................................................................................................................................................................................2311.001.00----1.00------------------------------------
....................................TTGCAGAGCTGGTGGGACG...................................................................................................................................................................................................191.000.00-------------------------------------1.00---
................................CGCTTTGCAGAGCTGGTGGATGA...................................................................................................................................................................................................231.000.00-----------------------------1.00-----------
..................................................................................TGGGGAGGAGGGTGGATAGGA...................................................................................................................................................211.000.00-------------------1.00---------------------
.........CGAACGCAGAGGAGCTCAA..............................................................................................................................................................................................................................1911.001.00----1.00------------------------------------
..................................................................................TGGGGAGGAGGGTGGATGGGTT..................................................................................................................................................221.000.001.00----------------------------------------
.........CGAACGCAGAGGAGCTC................................................................................................................................................................................................................................1711.001.00-1.00---------------------------------------
.................GAGGAGCTCAACATCCAG.......................................................................................................................................................................................................................181.000.00---------1.00-------------------------------
.........CGAACGCAGAGGAGCTCAACATCC.........................................................................................................................................................................................................................2411.001.00-1.00---------------------------------------
..................................................................................TGGGGAGGAGGGTGGATTGG....................................................................................................................................................201.000.00---1.00-------------------------------------
..................................................................................TGGGGAGGAGGGTGGAAGGG....................................................................................................................................................201.000.00-------1.00---------------------------------
..................................................................................TGGGGAGGAGGGTGGATGGG....................................................................................................................................................201.000.00-----1.00-----------------------------------
.....................................TGCAGAGCTGGTGGTAG....................................................................................................................................................................................................171.000.00---------------------1.00-------------------
..................................................................................TGGGGAGGAGGGTGGATAGAT...................................................................................................................................................211.000.001.00----------------------------------------
.........CGAACGCAGAGGAGCTCAACATCCGCT......................................................................................................................................................................................................................2711.001.00-1.00---------------------------------------
..................................................................................TGGGGAGGAGGGTGGATAGTA...................................................................................................................................................211.000.00----------------------------------1.00------
.................................GCTTTGCAGAGCTGGTGGATG....................................................................................................................................................................................................211.000.00----1.00------------------------------------
.....................................................................................GGAGGAGGGTGGATGGCGCA.................................................................................................................................................201.000.00---------------------------1.00-------------
........CCGAACGCAGAGGAGCTCAACATCC.........................................................................................................................................................................................................................2511.001.00-1.00---------------------------------------
.................................................................................................ATGGAGAGGCAGAGCCTG.......................................................................................................................................181.000.00-----------------------1.00-----------------
....................................................................................GGGAGGAGGGTGGATTGTT...................................................................................................................................................191.000.00-------------------------------1.00---------
..................................................................................TGGGGAGGAGGGTGGATAGT....................................................................................................................................................201.000.001.00----------------------------------------
.....................................................................................................AGAGGCAGAGCTGGACATAGG................................................................................................................................211.000.00----------------------------1.00------------
.....................................................................................................AGAGGCAGAGCTGGAATA...................................................................................................................................181.000.00--------------------------------------1.00--
..................................................................................TGGGGAGGAGGGTGGATTAGT...................................................................................................................................................211.000.001.00----------------------------------------
..................................................................................TGGGGAGGAGGGTGGATTATT...................................................................................................................................................211.000.00------------------------------1.00----------
.............................................................................................GTGGATGGAGAGGCAGAGCTGGACAGAGG................................................................................................................................2911.001.00----------------------1.00------------------
..CCCATCCCGAACGCAGAGGAGCTCAACATCCGCTTT....................................................................................................................................................................................................................3611.001.00--------------------------1.00--------------
..............................................................................................................................GGCCCCTGTGCTGGGTCCA.........................................................................................................191.000.00-------------------------1.00---------------
.....ATCCCGAACGCAGAGG.....................................................................................................................................................................................................................................1611.001.00--------1.00--------------------------------
.......CCCGAACGCAGAGGAGCTCA...............................................................................................................................................................................................................................2011.001.00-----1.00-----------------------------------
.....ATCCCGAACGCAGAGGAGCTCA...............................................................................................................................................................................................................................2211.001.00---1.00-------------------------------------
.........CGAACGCAGAGGAGCTCAACA............................................................................................................................................................................................................................2111.001.00---1.00-------------------------------------
..................................................................................TGGGGAGGAGGGTGGATGGGT...................................................................................................................................................211.000.001.00----------------------------------------
..................................................................................TGGGGAGGAGGGTGGATAAG....................................................................................................................................................201.000.001.00----------------------------------------
..................................................................................TGGGGAGGAGGGTGGAATAG....................................................................................................................................................201.000.001.00----------------------------------------
..........GAACGCAGAGGAGCTCA...............................................................................................................................................................................................................................1720.500.50----0.50------------------------------------
..........................................................................................AGGGTGGATGGAGAGGC...............................................................................................................................................1750.200.20--------0.20--------------------------------

Antisense strand
GCCCCATCCCGAACGCAGAGGAGCTCAACATCCGCTTTGCAGAGCTGGTGGTCAGTGAGAGGGTGGGGAGAGACAGTGACAATGGGGAGGAGGGTGGATGGAGAGGCAGAGCTGGACAGAGGGCAGGGCCCCTGTGCTGGGGTCTCCATCTCTCAAAACTCCTCTTGGGAGGAGATAGGCCCCCAGGACACCTCAGCTATGTTGGGGAACCAGAGTCTCTCACTGGGATGGACAGCATAAAGTGTGTCCC
..................................................((((.((................)).))))..........................................................................................................................................................................
..................................................51......................................................107.............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		TAX577746(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040036(GSM532921)
G243N. (cervix)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		TAX577579(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)
...........................................................................................................................................................AAACTCCTCTTGGGAGAG............................................................................. 181.000.00-----------------1.00-----------------------
..................................................................................................................................CCTGTGCTGGGGTCTCCTG..................................................................................................... 191.000.00---------1.00-------------------------------