ID: uc003ooe.1_intron_6_0_chr6_38718366_f.5p
GENE: (7)
chr6:38718316-38718565+


(5)
AGO2.ip
(4)
B-CELL
(3)
BRAIN
(1)
BREAST
(14)
CELL-LINE
(1)
CERVIX
(2)
LIVER
(2)
OTHER
(4)
SKIN

Sense strand
ATTTGTATACTTTGGAAAAAGTGTGTCAACCTCTCTATAACCATGACCTAGTAAGTATGCTTTTAAAGTACAATTTTAAACTGAGGGCAGTGGCTCGCATCTGTGATTCTAGCTACTCAGAAGGCTGAGGTGGAAGGATCGCTTGAGCCCAGGAGTGCAAGGCTGCAGTGAGCTATGGTTGTGCCACTGCATTCCAGCTTGAGTGACAGAGCAAGAAGACCCCATCTATATAAAAAAAAATAGTACAATT
...........................................................................................((((((.....((((((((..((((((((....))))).))).)))))))).)))))).....................................................................................................
.....................................................................................86..................................................................154..............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925PAZD5SRR189782GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029129(GSM416758)
SW480. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR038855(GSM458538)
D10. (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040022(GSM532907)
G575N. (cervix)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................................TGGCTCGCATCTGTGGTCA.............................................................................................................................................195.000.00--------2.00-----------1.00---1.00-----1.00---
...............................................................................................................................AGGTGGAAGGATCGCTTGAGCCC....................................................................................................2304.004.00--3.00-----------------------1.00-------
...............................................................................................................................AGGTGGAAGGATCGCTTGAGCC.....................................................................................................2204.004.00---2.002.00-----------------------------
.........................................................................................GTGGCTCGCATCTGTGGTCA.............................................................................................................................................203.000.00---------1.00-------1.00-----1.00----------
.........................................................................................GTGGCTCGCATCTGTGGTCT.............................................................................................................................................203.000.00----------------1.00-1.00---------1.00-----
...............................................................................................................................AGGTGGAAGGATCGCTTGAGCCCAGG.................................................................................................2602.002.00--2.00-------------------------------
...........................................................................................................................................................TGCAAGGCTGCAGTGAGTCGC..........................................................................212.000.00----------2.00-----------------------
..........................................................................................TGGCTCGCATCTGTGGTCT.............................................................................................................................................192.000.00-------------1.00------------------1.00-
..............................................................................................................................................TTGAGCCCAGGAGTGCAAGGCTGCCGT.................................................................................272.000.002.00---------------------------------
......................................................................................................................................AGGATCGCTTGAGCCCAGGAGTCTA...........................................................................................252.000.00-2.00--------------------------------
.....................................................................................................................................AAGGATCGCTTGAGCCCAGGAGTCCG...........................................................................................261.000.00-1.00--------------------------------
...............................................................................................................................AGGTGGAAGGATCGCTTGAGCCCAGAGGG..............................................................................................2901.001.001.00---------------------------------
...............................................................................................................................................................................................................................ATCTATATAAAAAAATATG........191.000.00-----1.00----------------------------
...............................................................................................................................................................................................................AGAGCAAGAAGACCCCACA........................191.000.00----------------------1.00-----------
..................................................................................................................................................................CTGCAGTGAGCTATGGTTG.....................................................................1901.001.00----1.00-----------------------------
.........................................................................................................................AGGCTGAGGTGGAAGGATCGCCC..........................................................................................................231.000.001.00---------------------------------
......................................................................................................................AGAAGGCTGAGGTGGAAGATAT..............................................................................................................221.000.00------------1.00---------------------
......................................................................................................................AGAAGGCTGAGGTGGAAGGAGT..............................................................................................................221.000.00-------------------------------1.00--
.........................................................................................GTGGCTCGCATCTGTGGGCT.............................................................................................................................................201.000.00---------1.00------------------------
............................................................................................................................CTGAGGTGGAAGGATCGCTTGAGGCG....................................................................................................261.000.001.00---------------------------------
...........................................................................................................................................................TGCAAGGCTGCAGTGAGCG............................................................................191.000.00-------------------------1.00--------
.........................................................................................................................AGGCTGAGGTGGAAGGATCGCTTGCAG......................................................................................................271.000.001.00---------------------------------
....................................................................................................................................GAAGGATCGCTTGAGCCCAGGAGTCCG...........................................................................................271.000.001.00---------------------------------
...............................................................................................................................AGGTGGAAGGATCGCTTGA........................................................................................................1901.001.00---1.00------------------------------
...............................................................................................................................AGGTGGAAGGATCGCTTGAG.......................................................................................................2001.001.00------1.00---------------------------
..................................................................................................................................TGGAAGGATCGCTTGAGCC.....................................................................................................1901.001.00------1.00---------------------------
.............................................................................................................................TGAGGTGGAAGGATCGATAG.........................................................................................................201.000.00-----1.00----------------------------
................................................................................................................................................................................................................GAGCAAGAAGACCCCCCC........................181.000.00---------------------------1.00------
.........................................................................................................................AGGCTGAGGTGGAAGGATCGGCTG.........................................................................................................241.000.001.00---------------------------------
.....................................................................................................................................AAGGATCGCTTGAGCCCAGGACTGG............................................................................................251.000.001.00---------------------------------
......................................................................................................................................................AGGAGTGCAAGGCTGCAGTGATCT............................................................................241.000.00---------------1.00------------------
..................................................................................................................................TGGAAGGATCGCTTGAGC......................................................................................................1801.001.00-----------------------------1.00----
....................................................................................................................................GAAGGATCGCTTGAGCCCAGG.................................................................................................2101.001.00------1.00---------------------------
...............................................................................................................................AGGTGGAAGGATCGCTTGAGCCCAGGTGC..............................................................................................2901.002.00-1.00--------------------------------
.....................................................................................................................................AAGGATCGCTTGAGCCCAGGTAC..............................................................................................231.000.001.00---------------------------------
...............................................................................................................................AGGTGGAAGGATCGCTTGAGCCCAG..................................................................................................2501.001.00---1.00------------------------------
.........................................................................................................................................................................................................AGTGACAGAGCAAGAAAT...............................181.000.00--------------1.00-------------------
.................................................................................................................................................AGCCCAGGAGTGCAAGGCTGCAGCG................................................................................251.000.00-1.00--------------------------------
.........................................................................................................................AGGCTGAGGTGGAAGGAATCC............................................................................................................211.000.00-----------1.00----------------------

Antisense strand
ATTTGTATACTTTGGAAAAAGTGTGTCAACCTCTCTATAACCATGACCTAGTAAGTATGCTTTTAAAGTACAATTTTAAACTGAGGGCAGTGGCTCGCATCTGTGATTCTAGCTACTCAGAAGGCTGAGGTGGAAGGATCGCTTGAGCCCAGGAGTGCAAGGCTGCAGTGAGCTATGGTTGTGCCACTGCATTCCAGCTTGAGTGACAGAGCAAGAAGACCCCATCTATATAAAAAAAAATAGTACAATT
...........................................................................................((((((.....((((((((..((((((((....))))).))).)))))))).)))))).....................................................................................................
.....................................................................................86..................................................................154..............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925PAZD5SRR189782GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029129(GSM416758)
SW480. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR038855(GSM458538)
D10. (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040022(GSM532907)
G575N. (cervix)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.......................................................................................................................................................................................................................................AAAAAAAAATAGTACAGAG 192.000.002.00---------------------------------
.........................................................................................GTGGCTCGCATCTGTGATCAT............................................................................................................................................ 212.000.00-2.00--------------------------------
................................................................................................................CTACTCAGAAGGCTGAGGTGGGA................................................................................................................... 231.000.001.00---------------------------------
......................................................................................................................................................................................GCCACTGCATTCCAGCTCGA................................................ 201.000.00-1.00--------------------------------
...............................................................................................................GCTACTCAGAAGGCTGAGGTCGAG................................................................................................................... 241.000.001.00---------------------------------
.........................................................................................................................................................................................................................................AAAAAAATAGTACAATTCTA 201.000.00-----1.00----------------------------
........................................................................................................................AAGGCTGAGGTGGAAGTCTG.............................................................................................................. 201.000.00-------------------1.00--------------
.......................................................................................CAGTGGCTCGCATCTGTTAC............................................................................................................................................... 201.000.00-1.00--------------------------------
......................................................................................................................AGAAGGCTGAGGTGGAAGGATCTG............................................................................................................ 241.000.00-------1.00--------------------------
................................................................................CTGAGGGCAGTGGCTCGCAGC..................................................................................................................................................... 211.000.00-1.00--------------------------------
..................................................................................................................................................GCCCAGGAGTGCAAGGCTGCAGTGAGCTCAGC........................................................................ 321.000.001.00---------------------------------
................................................................................................................................................................GGCTGCAGTGAGCTATGGTTG..................................................................... 211.000.001.00---------------------------------
..................................................................................................................................................................CTGCAGTGAGCTATGGTACCC................................................................... 211.000.00-1.00--------------------------------
..................................................................................................................................................................................................................................TATATAAAAAAAAATAATA..... 191.000.00-------1.00--------------------------
..................................................................................................................................................................................................................................TACTATTTTTTTTTATATA..... 1920.500.50---------------------------------0.50
..................................................................................................................................................................................................................................ACTATTTTTTTTTATATA...... 1820.500.50---------------------------------0.50
.............................................................................................................................................................TGGCACAACCATAGCTCACTGCAGCCTTG................................................................ 2960.170.170.17---------------------------------