ID: uc003onq.3_intron_3_0_chr6_37339351_f.5p
GENE: (4)
chr6:37339301-37339550+


(2)
AGO2.ip 		(6)
B-CELL 		(3)
BREAST 		(14)
CELL-LINE 		(3)
CERVIX 		(2)
HEART 		(4)
LIVER 		(3)
OTHER 		(9)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCCAAGGAGAAAAGGACCTGAAGCAACAGCTGGCCCAGGCTCTGCAGGAGGTAACTTTGCCATAGTACTAAGATTATAGTGGGCTGTGGAGTGGGGAGCAAACAGGCATCACATGACCACTGGCTGCCTCTGCTGCTTAGCCCATACCTCTGTGGCATCCCCAGTCTGTAAACAGAGCAGGTGGCAGCTGCTCACACCATCAGATCAGAGATTTGGAGCCTTACAAACATGCCAGACCTCAGCATGAAAA
.......................................................................................(((.(((((((((...((((((((.........))).))))).)))......(((((......)).))).)))))).)))...................................................................................
.....................................................................................86...............................................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR189782SRR343337SRR343336SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR343334SRR189784SRR343335SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189786RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		SRR040040(GSM532925)
G612N. (cervix)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................GTGGGGAGCAAACAGGATT.............................................................................................................................................1954.000.0019.004.009.006.00-1.001.002.00---2.001.00----1.00------1.00------1.001.00-1.001.00--------1.00-1.00--1.00----
..........................................................................................GTGGGGAGCAAACAGGAT..............................................................................................................................................1842.000.006.006.007.007.00-3.00-2.00----2.00----1.002.00-----1.00-1.00------------1.00-1.001.00----1.00------
..........................................................................................GTGGGGAGCAAACAGGATTA............................................................................................................................................2034.000.0015.0014.003.00--------1.00---------------1.00--------------------------
..........................................................................................GTGGGGAGCAAACAGGATC.............................................................................................................................................196.000.00----6.00-------------------------------------------------
........GAAAAGGACCTGAAGCA.................................................................................................................................................................................................................................1723.503.50--------3.50---------------------------------------------
......GAGAAAAGGACCTGAAGCAACA..............................................................................................................................................................................................................................2213.003.00---------------3.00--------------------------------------
.CCAAGGAGAAAAGGACCTGAAGC..................................................................................................................................................................................................................................2313.003.00----------3.00-------------------------------------------
....AGGAGAAAAGGACCTAAA....................................................................................................................................................................................................................................183.000.00--------------3.00---------------------------------------
..........................................................................................GTGGGGAGCAAACAGGATA.............................................................................................................................................193.000.003.00-----------------------------------------------------
....AGGAGAAAAGGACCTGAAGC..................................................................................................................................................................................................................................2012.002.00-----------------------1.00----------------1.00-------------
.......AGAAAAGGACCTGAAGCAAC...............................................................................................................................................................................................................................2012.002.00---------2.00--------------------------------------------
.........................ACAGCTGGCCCAGGCTCTGCAGGAGCAC.....................................................................................................................................................................................................282.000.00----------------------2.00-------------------------------
..........................................................................................GTGGGGAGCAAACAGCATT.............................................................................................................................................192.000.00--1.001.00--------------------------------------------------
.........................ACAGCTGGCCCAGGCTCTGCAGGAGGCAAC...................................................................................................................................................................................................302.000.00----------------2.00-------------------------------------
...........................................................................ATAGTGGGCTGTGGAGTGGGGAGC.......................................................................................................................................................2411.001.00---------------------1.00--------------------------------
..........................................................................................GTGGGGAGCAAACAGGCTT.............................................................................................................................................191.000.001.00-----------------------------------------------------
.........................................................................TTATAGTGGGCTGTGTTT...............................................................................................................................................................181.000.00-----------------1.00------------------------------------
............................................................................................GGGGAGCAAACAGGCTTC............................................................................................................................................181.000.00---------------------------------------------1.00--------
.........................................CTGCAGGAGGTAACTTTG...............................................................................................................................................................................................1811.001.00-------------------1.00----------------------------------
.....GGAGAAAAGGACCTGAAGCAGTTT.............................................................................................................................................................................................................................241.000.00-------------------------------------1.00----------------
..........................................................................................GTGGGGAGCAAACAGGCTTAG...........................................................................................................................................211.000.00------------------------------1.00-----------------------
..............................................................................GTGGGCTGTGGAGTGGGTGAA.......................................................................................................................................................211.000.00------------------------------------------------1.00-----
...........................................................................................TGGGGAGCAAACAGGCT..............................................................................................................................................171.000.00---------------------1.00--------------------------------
...AAGGAGAAAAGGACCTGAAGCAACAGCT...........................................................................................................................................................................................................................2811.001.00-------------1.00----------------------------------------
..............................................................................................................................................................................................................................ACAAACATGCCAGACCTCAGCACGA...251.000.00----------------1.00-------------------------------------
..........................................................................................GTGGGGAGCAAACAGGACTA............................................................................................................................................201.000.00------1.00-----------------------------------------------
.........AAAAGGACCTGAAGCAACAGCTGGCCCAGGC..................................................................................................................................................................................................................3111.001.00-------------1.00----------------------------------------
.................................CCCAGGCTCTGCAGGAGGTAACTTTGCCATAGT........................................................................................................................................................................................3311.001.00-------------------------------------------1.00----------
.........AAAAGGACCTGAAGCAAC...............................................................................................................................................................................................................................1811.001.00-----------------------------1.00------------------------
.................................................................................................................................................................CAGTCTGTAAACAGACCA.......................................................................181.000.00--------------------------------------1.00---------------
...AAGGAGAAAAGGACCTGAAGC..................................................................................................................................................................................................................................2111.001.00-------------------------1.00----------------------------
........GAAAAGGACCTGAAGCAACAGCTG..........................................................................................................................................................................................................................2411.001.00--------------------------------------------------1.00---
...............................GGCCCAGGCTCTGCAGGAG........................................................................................................................................................................................................1911.001.00---------1.00--------------------------------------------
........................................................................................GAGTGGGGAGCAAACAGGATT.............................................................................................................................................211.000.00------1.00-----------------------------------------------
..................................................................ACTAAGATTATAGTGGGCTGTGGAGTGG............................................................................................................................................................2811.001.00-----------------------1.00------------------------------
..........................................................................................GTGGGGAGCAAACAGGGGGG............................................................................................................................................201.000.00-------------------1.00----------------------------------
.................CTGAAGCAACAGCTGGCCA......................................................................................................................................................................................................................191.000.00--------------------1.00---------------------------------
....................................AGGCTCTGCAGGAGGAA.....................................................................................................................................................................................................171.000.00------------------------------------1.00-----------------
..........................................................................................GTGGGGAGCAAACAGGATAC............................................................................................................................................201.000.00------1.00-----------------------------------------------
....AGGAGAAAAGGACCTGAA....................................................................................................................................................................................................................................1820.500.50---------0.50--------------------------------------------
.....GGAGAAAAGGACCTGAAGC..................................................................................................................................................................................................................................1920.500.50---------------------------------------------------0.50--
.......AGAAAAGGACCTGAAGC..................................................................................................................................................................................................................................1720.500.50----------0.50-------------------------------------------
.......AGAAAAGGACCTGAAGCA.................................................................................................................................................................................................................................1820.500.50--------------------0.50---------------------------------
......GAGAAAAGGACCTGAAG...................................................................................................................................................................................................................................1760.170.17-----------0.17------------------------------------------

Antisense strand
CCCAAGGAGAAAAGGACCTGAAGCAACAGCTGGCCCAGGCTCTGCAGGAGGTAACTTTGCCATAGTACTAAGATTATAGTGGGCTGTGGAGTGGGGAGCAAACAGGCATCACATGACCACTGGCTGCCTCTGCTGCTTAGCCCATACCTCTGTGGCATCCCCAGTCTGTAAACAGAGCAGGTGGCAGCTGCTCACACCATCAGATCAGAGATTTGGAGCCTTACAAACATGCCAGACCTCAGCATGAAAA
.......................................................................................(((.(((((((((...((((((((.........))).))))).)))......(((((......)).))).)))))).)))...................................................................................
.....................................................................................86...............................................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR189782SRR343337SRR343336SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR343334SRR189784SRR343335SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189786RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		SRR040040(GSM532925)
G612N. (cervix)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
..........AAAGGACCTGAAGCAATC.............................................................................................................................................................................................................................. 181.000.00---------------------------------1.00--------------------
...........................................................................................................ATCACATGACCACTGTTTG............................................................................................................................ 191.000.00-------------1.00----------------------------------------
..CAAGGAGAAAAGGACAGA...................................................................................................................................................................................................................................... 181.000.00----------------------------1.00-------------------------
..........................................................................................................................................................................................TCTGATGGTGTGAGCAGC.............................................. 1820.500.50--------------------0.50---------------------------------
...........................................................................................................................................................TTTACAGACTGGGGATG.............................................................................. 1730.330.33----------------------------------------------------0.33-
......................................................................................................................................................................................GGTGTGAGCAGCTGCC.................................................... 1690.110.11-----------------------------------------------------0.11