ID: uc003okf.1_intron_16_0_chr6_35211908_f.3p
GENE: SCUBE3(17)
chr6:35212227-35212476+


(1)
B-CELL
(1)
BRAIN
(2)
BREAST
(7)
CELL-LINE
(2)
CERVIX
(2)
HEART
(1)
LIVER
(2)
OTHER
(1)
RRP40.ip
(24)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
ACTGTAGCCAACCACTCTGTAAACTCTGTTTTTCCGTGGGCTTAAATTCTGGCATGACTGGGAAAGATTGAGACCCTAGAAAAGAACTTTGATGTATCTGATCTCCTGATTCTCCAGGATGAATGTATCCTGTCCATCCCATGCCCCGTAACTCCCACCTGCCTACCATCTTGATTCCTGCCCTTCTCCCTTGCCTACAGTCCAGTGCTCCCCAGGGCACTACTACAACACCAGCATCCACCGCTGTATT
.........................................................(((((............)))))...(((((......)).))).......................................................................................................................................................
..................................................51.................................................102..................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR189784SRR189783
...............................................................................AAAAGAACTTTGATGAGAG........................................................................................................................................................1959.000.0033.008.002.00-1.002.001.001.001.001.00-1.001.00-1.00-1.001.001.00--1.001.00--1.00---------------------
..............................................................................GAAAAGAACTTTGATGAGAG........................................................................................................................................................2039.000.334.330.67--------0.330.33-0.33---------------------0.330.67-0.330.330.330.330.330.33---
...............................................................................AAAAGAACTTTGATGAGA.........................................................................................................................................................183.000.00-1.001.00-----------------1.00--------------------------
..............................................................................GAAAAGAACTTTGATAGAG.........................................................................................................................................................192.000.00-------1.00-------1.00-------------------------------
............................................................................TAGAAAAGAACTTTGAAG............................................................................................................................................................182.000.00--------1.00---------------------1.00----------------
...............................................................................AAAAGAACTTTGATGGCGA........................................................................................................................................................191.000.00------1.00----------------------------------------
................................................................................................TCTGATCTCCTGATTCGCA.......................................................................................................................................191.000.00--------------------------------1.00--------------
..........................................................................................................................................................................................TCCCTTGCCTACAGTCCAGGGA..........................................221.000.00-----------------------------1.00-----------------
......................................................TGACTGGGAAAGATTGAGAC................................................................................................................................................................................2011.001.00----------------------------1.00------------------
...............................................................................AAAAGAACTTTGATGAGAA........................................................................................................................................................191.000.001.00----------------------------------------------
............................................................................TAGAAAAGAACTTTGAAGAG..........................................................................................................................................................201.000.00-1.00---------------------------------------------
........................................................................ACCCTAGAAAAGAACTCTG...............................................................................................................................................................191.000.00---------------------------------1.00-------------
..............................................................................GAAAAGAACTTTGATGTGAGA.......................................................................................................................................................211.000.00--------------------------1.00--------------------
...............................................................................AAAAGAACTTTGATGG...........................................................................................................................................................161.000.00----1.00------------------------------------------
................................................................................AAAGAACTTTGATGTAGGG.......................................................................................................................................................191.000.00----------1.00------------------------------------
..............................................................................GAAAAGAACTTTGATGATAG........................................................................................................................................................2030.330.33------------0.33----------------------------------
..............................................................................GAAAAGAACTTTGATG............................................................................................................................................................1630.330.33-----------------------------------0.33-----------
..............................................................................GAAAAGAACTTTGATGAGGG........................................................................................................................................................2030.330.33--------------------------------------------0.33--
....................................................................................................................................................................................................................CAGGGCACTACTACA.......................1540.250.25---------------------------------------------0.25-
...................................................................................................................................................................................................TACAGTCCAGTGCTC........................................1560.170.17----------------------------------------------0.17

Antisense strand
ACTGTAGCCAACCACTCTGTAAACTCTGTTTTTCCGTGGGCTTAAATTCTGGCATGACTGGGAAAGATTGAGACCCTAGAAAAGAACTTTGATGTATCTGATCTCCTGATTCTCCAGGATGAATGTATCCTGTCCATCCCATGCCCCGTAACTCCCACCTGCCTACCATCTTGATTCCTGCCCTTCTCCCTTGCCTACAGTCCAGTGCTCCCCAGGGCACTACTACAACACCAGCATCCACCGCTGTATT
.........................................................(((((............)))))...(((((......)).))).......................................................................................................................................................
..................................................51.................................................102..................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR189784SRR189783
....................................................................................................................................................................ACCATCTTGATTCCTGCGTC.................................................................. 201.000.00----------------------------------1.00------------
......................................................................AAGTTCTTTTCTAGGGTCT................................................................................................................................................................. 1911.001.00---------------------------1.00-------------------
..........................................................................................................................................................................................................................TGGATGCTGGTGTTGTAGTAGT.......... 2211.001.00-------------------1.00---------------------------
.............................................................................................................................................TGCCCCGTAACTCCCACCTGCCTCGGG.................................................................................. 271.000.00------------------------1.00----------------------
.....................................................................................................................................................................CCATCTTGATTCCTGCCCTTCTC.............................................................. 231.000.00-----------------------1.00-----------------------
..................................................................................................TGGAGAATCAGGAGATCA...................................................................................................................................... 1811.001.00-------------1.00---------------------------------
............................................................................................................ATTCTCCAGGATGAAGTA............................................................................................................................ 181.000.00-------------------------------1.00---------------
......................................................................................................................................................................................GAGCACTGGACTGTAGGCAAGGGAGAAG........................................ 2811.001.00---1.00-------------------------------------------
...........................................................................................................................................................................................GCACTGGACTGTAGGCAAGGG.......................................... 2111.001.00---------1.00-------------------------------------
..............................................................................................................................................................................................GGAGCACTGGACTGTAGGCAA....................................... 2111.001.00---1.00-------------------------------------------
.............AACAGAGTTTACAGAGT............................................................................................................................................................................................................................ 1740.500.50-------------------------------------0.50---------