ID: uc003oey.2_intron_4_0_chr6_33655342_f
GENE: (5)
chr6:33655292-33655883+


(2)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(7)
BREAST
(25)
CELL-LINE
(1)
CERVIX
(3)
HEART
(2)
LIVER
(2)
OTHER
(22)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
AGCCGGTGAAGCGCATTCAAGAGGAGGAGGCCGAGGGTATCTCTTCCATGGTGGGTGCTGGCCCCGAGACTGGGGTGGGGGTGGGGCCTGGAACCCAGGGAGGACACTTGACCCAAGGGCGTGGCCTGGAACAGAGTGAGGCCCTAGAATATGAGCCAGGCTAGAATTTGGGGGTACAGCTCAGGGGGCTGATTGGGACTGGCAGCCGTGGGTGAAACCCAGACAGAAATGGAAGCAAGGCTCAGGTGGGTCTAGGGTGGGTCTGGAAGCTTCAAGCAGGACCCGGGCTACACTTGGGCAGGACTGAGGAGGCCCCCGCTATCCTCTGGGATTCTCTGGTCATGGCTCTCCCACTCCCCTCCCTTTGGCACCAGGTTCTCAAGGCTCAGTCCTAGTTGGGCTGGGCTTGGCCTGCTCTGGCTTGGCGGGGACACTCGCTGAAGTGTAGTTCAGAGCTAGGCGAAGGCCTGGGAGGGTGGGGGCTGAGTGCCAGCCTGGATGTGGAGGCTGGGGCCTGACCTCCGCGCCCTCCCCACCTCCAGCTCAGCCTCAACAACAAGCAGCTGTCACAGATGCTCAAGTCCTCAGCGCC
...................................................(((((.(((((((((...((.....))...))))))).)).)))))(((....(((((...((..((((...))))))....)))))...)))................................................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150........................................................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189787SRR189786SRR189785SRR343335SRR343334SRR343337SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189782SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR343336DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038860(GSM458543)
MM426. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR038862(GSM458545)
MM472. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR037941(GSM510479)
293DroshaTN. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
.........................................................................................................................................................................GGGGGTACAGCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................155160.20160.2093.205.600.2043.405.005.604.40-0.20-1.400.20---------------0.20----------------------------------0.40--------0.20--0.20-
.........................................................................................................................................................................GGGGGTACAGCTCAGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................18185.0085.003.0047.0031.00--------------2.00-------------1.00--------1.00-----------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGG......................................................................................................................................................................................................................................................................................................................................................................................................................17182.0082.0012.0045.0025.00-------------------------------------------------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................16122.0022.0010.006.00------1.00--2.00-1.00--------------1.00----------------------------1.00------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................1858.80160.200.807.000.40---------------------------------------------------------------0.200.200.20-------
.........................................................................................................................................................................GGGGGTACAGCTCAGGGGTAG..................................................................................................................................................................................................................................................................................................................................................................................................................2117.0085.006.001.00--------------------------------------------------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................1816.0022.00-2.004.00-------------------------------------------------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGGGTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................2214.0085.00--1.00-----1.001.00---------------------------------------1.00--------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGGGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................2214.0085.00-------2.00-2.00------------------------------------------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................1753.40160.201.401.600.40-------------------------------------------------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................1753.20160.202.200.80-------------------------------------------------------------------0.20------
..........................................................................................................................................................................GGGGTACAGCTCAGGGGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................2113.001.00-------1.00-----1.00--------------------------------------------1.00-----------------
.........................................................................................................................................................................GGGGGTACAGCTCAGCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................1852.80160.200.402.20--------------------------------------------------------------------0.20-----
.........................................................................................................................................................................GGGGGTACAGCTCAGTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................1952.60160.20-2.40-----0.20--------------------------------------------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................1652.40160.20----1.200.800.20---0.20-----------------------------------------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGGGTA...................................................................................................................................................................................................................................................................................................................................................................................................................2012.0085.00-2.00--------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCGCGCCCTCCCCC.........................................................172.000.00----------------------------------1.00---------------1.00-------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGGGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................212.000.002.00---------------------------------------------------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGGGT....................................................................................................................................................................................................................................................................................................................................................................................................................1912.0085.00--1.00-----------------------------------------------------1.00-------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAGGCTGGGGCTTTG..........................................................................191.000.00----------------------------------------------------1.00-----------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGGGCGCC.................................................................................................................................................................................................................................................................................................................................................................................................................2211.0085.001.00---------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................GGTGGGTCTGGAAGCTTCAAGCAGGG.......................................................................................................................................................................................................................................................................................................................261.000.00------------------------------------------------------------1.00---------------
........................................................................................................................................................................................................................................................................................................................................GGATTCTCTGGTCATTGA......................................................................................................................................................................................................................................................181.000.00-------------------------------------1.00--------------------------------------
...................................................................................................................................................AATATGAGCCAGGCTAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00----------1.00-----------------------------------------------------------------
............................................................................................................................................................................................CTGATTGGGACTGGCAGCCG................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------------------1.00----------------------------------------------
...................AGAGGAGGAGGCCGAGGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00--------------1.00-------------------------------------------------------------
...............................................................................................................................................................................................ATTGGGACTGGCAGCTTTT..............................................................................................................................................................................................................................................................................................................................................................................................191.000.00------------1.00---------------------------------------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGGGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................2211.0085.001.00---------------------------------------------------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGCGGT...................................................................................................................................................................................................................................................................................................................................................................................................................2011.0022.001.00---------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCTGACCTCCGCGCCCTACGA..........................................................241.000.00------------------1.00---------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCTCAACAACAAGCAGCTGTC........................2411.001.00----------------------1.00-----------------------------------------------------
................TCAAGAGGAGGAGGCCGAGGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00----------------------------------------------1.00-----------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCTGACCTCCGCGCCCTCC............................................................2211.001.00------------------1.00---------------------------------------------------------
..........................................................................................................................................................................GGGGTACAGCTCAGGCCG....................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------------1.00-------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCAACAACAAGCAGCTGTCACAG....................2511.001.00--------------------------------------------1.00-------------------------------
..........................................................................................................................................................................GGGGTACAGCTCAGGGGTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-------------------------------------------------------1.00--------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGGTGGGGGCTGAGTGCCCTTT.................................................................................................261.000.00---------------------------------------------1.00------------------------------
.................CAAGAGGAGGAGGCCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-----------------------------------------------------------1.00----------------
...............................................................................................................................................................................................................................................................GGTGGGTCTGGAAGCTCTG..............................................................................................................................................................................................................................................................................................................................191.000.00---------------1.00------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGGGGGCTGAGTCGGA....................................................................................................191.000.00------------1.00---------------------------------------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................1711.0022.00--1.00-------------------------------------------------------------------------
.............CATTCAAGAGGAGGAGGCCGAGGGTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00---------------------------1.00------------------------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0082.00-1.00--------------------------------------------------------------------------
..........................................................................................................................................................................GGGGTACAGCTCAGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.001.00---------------------------------------------------------------------------
.............CATTCAAGAGGAGGAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00----------------------1.00-----------------------------------------------------
....................GAGGAGGAGGCCGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------1.00-------------------------------------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.0082.00-1.00--------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTGGGCTTGGCCGTG.................................................................................................................................................................................191.000.00---------------1.00------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAACAACAAGCAGCTG..........................1811.001.00-----------------------------------1.00----------------------------------------
.......................................................TGCTGGCCCCGAGACTGTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.001.00---------------------------------------------------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGGGGAGCC................................................................................................................................................................................................................................................................................................................................................................................................................231.000.001.00---------------------------------------------------------------------------
........................................................................................................................................................................TGGGGGTACAGCTCAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--1.00-------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATGTGGAGGCTGGGGCC.............................................................................2211.001.00------------------------------------------1.00---------------------------------
................................................................................................................................................................................................TTGGGACTGGCAGCCAAT..............................................................................................................................................................................................................................................................................................................................................................................................181.000.00---------------------------------------------------1.00------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGGGGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................231.000.00-------1.00--------------------------------------------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................2011.0085.00-1.00--------------------------------------------------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGACC....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0022.001.00---------------------------------------------------------------------------
..................................................................................................................................................................................................GGGACTGGCAGCCGTGGTGAG.........................................................................................................................................................................................................................................................................................................................................................................................211.000.00-----------------------------------------1.00----------------------------------
........................AGGAGGCCGAGGGTATCTCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00------------------------1.00---------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGGATGTGGAGGCTG..................................................................................1821.001.00---------------------------------------1.00------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTCAACAACAAGCAGCTGTCA.......................2411.001.00------------------------------------------------1.00---------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0022.00-1.00--------------------------------------------------------------------------
.........................................................................................................................................................................GGGGGTACAGCTCAGCTGG....................................................................................................................................................................................................................................................................................................................................................................................................................1950.80160.20---0.60----0.20-------------------------------------------------------------------
........................................................................................................................................................................TGGGGGTACAGCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................1620.500.50----0.50-----------------------------------------------------------------------
...........................................................................................................................................................................GGGTACAGCTCAGGGGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................2060.500.17--------------------------0.33------------------------------------------------0.17
.........................................................................................................................................................................GGGGGTACAGCTCAGCGGT....................................................................................................................................................................................................................................................................................................................................................................................................................1950.40160.20-0.40--------------------------------------------------------------------------
..........................................................................................................................................................................GGGGTACAGCTCAGGG......................................................................................................................................................................................................................................................................................................................................................................................................................1650.400.400.20---------------------------0.20-----------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................CTCTCCCACTCCCCTCCC.....................................................................................................................................................................................................................................1840.250.25-----------------------------------------------------------------0.25----------
............................................................................................................................................................CAGGCTAGAATTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................1650.200.20-------------------------------------------------------------0.20--------------
.........................................................................................................................................................................GGGGGTACAGCTCAGTGGT....................................................................................................................................................................................................................................................................................................................................................................................................................1950.20160.20------------------------------------------------------------------------0.20---
.........................................................................................................................................................................GGGGGTACAGCTCAGTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................1850.20160.20-0.20--------------------------------------------------------------------------
...........................................................................................................................................................................GGGTACAGCTCAGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................1660.170.17-0.17--------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGTCACAGATG.................1670.140.14-----------------------------0.14----------------------------------------------

Antisense strand
AGCCGGTGAAGCGCATTCAAGAGGAGGAGGCCGAGGGTATCTCTTCCATGGTGGGTGCTGGCCCCGAGACTGGGGTGGGGGTGGGGCCTGGAACCCAGGGAGGACACTTGACCCAAGGGCGTGGCCTGGAACAGAGTGAGGCCCTAGAATATGAGCCAGGCTAGAATTTGGGGGTACAGCTCAGGGGGCTGATTGGGACTGGCAGCCGTGGGTGAAACCCAGACAGAAATGGAAGCAAGGCTCAGGTGGGTCTAGGGTGGGTCTGGAAGCTTCAAGCAGGACCCGGGCTACACTTGGGCAGGACTGAGGAGGCCCCCGCTATCCTCTGGGATTCTCTGGTCATGGCTCTCCCACTCCCCTCCCTTTGGCACCAGGTTCTCAAGGCTCAGTCCTAGTTGGGCTGGGCTTGGCCTGCTCTGGCTTGGCGGGGACACTCGCTGAAGTGTAGTTCAGAGCTAGGCGAAGGCCTGGGAGGGTGGGGGCTGAGTGCCAGCCTGGATGTGGAGGCTGGGGCCTGACCTCCGCGCCCTCCCCACCTCCAGCTCAGCCTCAACAACAAGCAGCTGTCACAGATGCTCAAGTCCTCAGCGCC
...................................................(((((.(((((((((...((.....))...))))))).)).)))))(((....(((((...((..((((...))))))....)))))...)))................................................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150........................................................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189787SRR189786SRR189785SRR343335SRR343334SRR343337SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189782SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR343336DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038860(GSM458543)
MM426. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR038862(GSM458545)
MM472. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR037941(GSM510479)
293DroshaTN. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
............................................................................................................................TATTCTAGGGCCTCACTCTGTTCCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2712.002.00-------------------2.00--------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCCTGGATGTGCAG...................................................................................... 182.000.00---2.00------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................TGGGTCTGGAAGCTTGCGT............................................................................................................................................................................................................................................................................................................................ 191.000.00-1.00--------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTCCCCACCTCCAAGGG............................................... 201.000.00------------------------------------------------------1.00---------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCGCGCCCTCCCCAA........................................................ 181.000.00----------------1.00-----------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCTGGGGCCTGTTAA....................................................................... 191.000.00--------------------------------------1.00-------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCCGCGCCCTCCAG.......................................................... 171.000.00-----------------------1.00----------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAGAGCTAGGCGAAGCTG............................................................................................................................ 221.000.00----------------1.00-----------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGACTTGAGCATCTGTGACAGC.... 2611.001.00---------------------1.00------------------------------------------------------
................................................................CGAGACTGGGGTGGGGGTCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 211.000.00------------------------------------1.00---------------------------------------
........................................................................................................................................................................................................................................................................................................................CCCCCGCTATCCTCTATG...................................................................................................................................................................................................................................................................... 181.000.00------------------------1.00---------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................CATGGCTCTCCCACTCTT.......................................................................................................................................................................................................................................... 181.000.00-----------------------------------------------1.00----------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGGGAGGGTGGGGTT............................................................................................................. 191.000.00--------------------1.00-------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGACTTGAGCATCTGTGACAGCTGC..... 2811.001.00---------------------1.00------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCACCTCCAGCTAAAG............................................ 191.000.00---1.00------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCCTGGATGTGGAGA..................................................................................... 181.000.00-------------------------------------------1.00--------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAGAGCTAGGCCTG................................................................................................................................ 181.000.00--------------------1.00-------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTCCGCGCCCTCCGTG......................................................... 191.000.001.00---------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAGAGCTAGGCGCTG............................................................................................................................... 191.000.00-----------------------------------------------------1.00----------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCCAGCTCAGCAAGA........................................ 191.000.00---------------------------------1.00------------------------------------------
........................................................................................................................................................................................................................................................GGTCTAGGGTGGGTCTGGT..................................................................................................................................................................................................................................................................................................................................... 191.000.00--------------------------------1.00-------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCTCCAGCTCAGACAG......................................... 191.000.00-----------------------1.00----------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGAGGCTGAGCTGGA.................................... 1911.001.00-------------------------1.00--------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCGCGCCCTCCCCGTG....................................................... 191.000.001.00---------------------------------------------------------------------------
................................................................CGAGACTGGGGTGGGGGTCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 201.000.00------------------------------1.00---------------------------------------------
....................................................................................................................................................................................................................TGAAACCCAGACAGAAATG......................................................................................................................................................................................................................................................................................................................................................................... 191.000.00--------1.00-------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................CTTGAGAACCTGGTGC................................................................................................................................................................................................................. 1630.670.67---------------------------------------------------------------0.330.33-----------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGAGGACTTGAG.. 1530.330.33-------------------------------------------------------------0.33--------------
......................................................................................................................................................................................................................................................................................................CCTCCTCAGTCCTGCCCA........................................................................................................................................................................................................................................................................................ 1830.330.33-------------------------0.33--------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................TTGAGAACCTGGTGC.................................................................................................................................................................................................................. 1550.200.20-------------------------------------------------------------------------0.20--