ID: uc003ocx.1_intron_26_0_chr6_33140156_r
GENE: COL11A2(39)
chr6:33140106-33140356-


(1)
AGO2.ip 		(5)
B-CELL 		(3)
BRAIN 		(11)
BREAST 		(26)
CELL-LINE 		(4)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(1)
HELA 		(2)
LIVER 		(1)
OTHER 		(9)
SKIN 		(2)
UTERUS

Sense strand
CCCCTGGAGAGCAGGGACTACCTGGGACAGCTGGAAAAGAAGGAACAAAGGTCAGTGAGGGGCCAGGCAGAGGGGAAGTGGGGGAGCTGGGGATTGGGGTGCTGAAAGGAACAGGTAGTTGGAGATTTGAGGGGGGGCTGGAGAGCTCTCTGTTTAATTTGGGAGCATGGCTGTGGCTCATCACCTCTCCTTTCCTTTTAGGGTGACCCTGGTCCCCCTGGGGCCCCAGGGAAGGATGGTCCTGCTGGTCT
................................................................................((((((((...(((((..((.((....)).))...)))))......((.((......)).)).))))))))....................................................................................................
.............................................................................78..........................................................................154...............................................................................................
SizePerfect hitTotal NormPerfect NormDRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189784DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040034(GSM532919)
G001N. (cervix)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR038853(GSM458536)
MELB. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................GGAGCTGGGGATTGGGGGT......................................................................................................................................................19151.003.005.00-1.003.002.004.002.002.003.001.002.00--1.002.002.001.00--1.001.00-------1.001.00-1.00--1.00-1.001.001.001.001.00----1.001.00--1.00---1.00-1.00--1.001.001.00--1.00---
..................................................................................GGAGCTGGGGATTGGGGG.......................................................................................................................................................1816.003.00--1.00---1.00--1.00--------------------1.00----------------1.00------1.00------------
...................................................................................GAGCTGGGGATTGGGGGT......................................................................................................................................................185.000.001.00-1.001.001.00---------------------1.00----------------------------------------
..................................................................................GGAGCTGGGGATTGGGGGTT.....................................................................................................................................................2014.003.00----------------1.001.00-----1.00-----------1.00-------------------------------
.................................................................................GGGAGCTGGGGATTGTGGG.......................................................................................................................................................193.000.00-----------1.001.00-------------------------------1.00----------------------
..................................................................................GGAGCTGGGGATTGGGG........................................................................................................................................................1713.003.00----1.00-------------------------------------------1.00-1.00----------------
..................................................................................GGAGCTGGGGATTGGGGGA......................................................................................................................................................1912.003.001.00------------------------------------------1.00-----------------------
.................................................................................GGGAGCTGGGGATTGTGG........................................................................................................................................................182.000.00-----------1.00------------------------------1.00------------------------
.....................................................................................GCTGGGGATTGGGGTTTGC...................................................................................................................................................192.000.00-2.00-----------------------------------------------------------------
.....................................................................................GCTGGGGATTGGGGTTGCA...................................................................................................................................................191.000.00-1.00-----------------------------------------------------------------
.....................CTGGGACAGCTGGAAAAGAAGGAA..............................................................................................................................................................................................................2411.001.00---------------------------1.00---------------------------------------
..................................................................................GGAGCTGGGGATTGGGGGG......................................................................................................................................................1911.003.001.00------------------------------------------------------------------
.................................................................................GGGAGCTGGGGATTGTCG........................................................................................................................................................181.000.00------------------1.00------------------------------------------------
.......................................................................GGGGAAGTGGGGGAGCTCCG................................................................................................................................................................201.000.00------------------------1.00------------------------------------------
....................................................................................AGCTGGGGATTGGGGGTAA....................................................................................................................................................1901.001.00---------------------1.00---------------------------------------------
.....................CTGGGACAGCTGGAAAAGAAGGA...............................................................................................................................................................................................................2311.001.00-------------------------1.00-----------------------------------------
..................................................................................GGAGCTGGGGATTGGAAC.......................................................................................................................................................181.000.00-------------------------------------------------------------1.00-----
..................................................................................GGAGCTGGGGATTGGGGGTTT....................................................................................................................................................2111.003.00---------------------------------------------------------1.00---------
...................................................................................GAGCTGGGGATTGGGGG.......................................................................................................................................................171.000.00---------1.00---------------------------------------------------------
....................................................................................AGCTGGGGATTGGGG........................................................................................................................................................1501.001.00--1.00----------------------------------------------------------------
..................................................................................................................................GGGGGGGCTGGAGAGCCCGT.....................................................................................................201.000.00-1.00-----------------------------------------------------------------
..................................AAAAGAAGGAACAAAG.........................................................................................................................................................................................................1601.001.00--1.00----------------------------------------------------------------
..................................................................................GGAGCTGGGGATTGGGGT.......................................................................................................................................................1811.001.00-----------------1.00-------------------------------------------------
....................................................................................AGCTGGGGATTGGGGGTTC....................................................................................................................................................1901.001.00--------------------------------------------------------1.00----------
..........................................................................................................................................................................................................................................GATGGTCCTGCTGGTGCT181.000.00------------1.00------------------------------------------------------
............................AGCTGGAAAAGAAGGACATA...........................................................................................................................................................................................................201.000.00---------------------------------------------------1.00---------------
..................................................................................GGAGCTGGGGATTGGG.........................................................................................................................................................1630.670.67------0.33----------------------------------------------------------0.33-
.....................................................................................................................GTTGGAGATTTGAGGG......................................................................................................................1630.330.33----------------------------------------------------------------0.33--

Antisense strand
CCCCTGGAGAGCAGGGACTACCTGGGACAGCTGGAAAAGAAGGAACAAAGGTCAGTGAGGGGCCAGGCAGAGGGGAAGTGGGGGAGCTGGGGATTGGGGTGCTGAAAGGAACAGGTAGTTGGAGATTTGAGGGGGGGCTGGAGAGCTCTCTGTTTAATTTGGGAGCATGGCTGTGGCTCATCACCTCTCCTTTCCTTTTAGGGTGACCCTGGTCCCCCTGGGGCCCCAGGGAAGGATGGTCCTGCTGGTCT
................................................................................((((((((...(((((..((.((....)).))...)))))......((.((......)).)).))))))))....................................................................................................
.............................................................................78..........................................................................154...............................................................................................
SizePerfect hitTotal NormPerfect NormDRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189784DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040034(GSM532919)
G001N. (cervix)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR038853(GSM458536)
MELB. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................................................................................TGGCTCATCACCTCTCCTTCCC........................................................ 221.000.00--------------------------------------------------------------1.00----
......................................................................................................................................................................................ACCTCTCCTTTCCTTTCAG.................................................. 191.000.00-------1.00-----------------------------------------------------------
...................................................................................................................................GGGGGGCTGGAGAGCGATT..................................................................................................... 191.000.00-------------1.00-----------------------------------------------------
......................................................................................................................................GGGCTGGAGAGCTCTAACG.................................................................................................. 191.000.00----------------------------------------------------1.00--------------
............................................................................................ATTGGGGTGCTGAAAATTG............................................................................................................................................ 191.000.00-1.00-----------------------------------------------------------------
.................................................................................GGGAGCTGGGGATTGTCTG....................................................................................................................................................... 191.000.00-1.00-----------------------------------------------------------------
..........................................................................................................................................................................................................GTGACCCTGGTCCCCCTTGCC............................ 211.000.00-----------------------------------------1.00-------------------------
......................................................................................................................................GGGCTGGAGAGCTCTGACG.................................................................................................. 191.000.00---------------------------------1.00---------------------------------
......................................................................................................................................GGGCTGGAGAGCTCTCGA................................................................................................... 181.000.00----------------------1.00--------------------------------------------
...................................................................................................................................GGGGGGCTGGAGAGCTGGC..................................................................................................... 191.000.00--------------------------------1.00----------------------------------
..................................................................CCCCACTTCCCCTCTGC........................................................................................................................................................................ 1740.250.25------------------------------------------------------------------0.25