uc003oct.1_intron_2_0_chr6_33041550

TGACCAAAAAACATCAAAGATCATCTGACTGTCTGGGATGGGGGTGGGGCTCGGGAGAAGGAACATAATGGAAAACATTTGCCGTCAGAAGAAGGTGTAACTTATCTTTTTACATCTCTTTCTCTAACTCTGAAAATGAACTGTGAACTGGAGCTCTCTTGACCACGCTGGTACCTAAAATTCTCCCATCTCTTCCCCAGCACCTTCCAGCGTCCTCTTTACCCAGCAACAGAGAATGTCAGCTCTATGA
..............................................((((((.((.((.((.....((((.....))))..)).)).(((..((((((((.........))))))))..))).........................)).))))))..............................................................................................
............................................45.............................................................................................................156............................................................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR343336

SRR343337

SRR343334

SRR343335

SRR189785

SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)

SRR033728(GSM497073)
MALT (MALT413). (B cell)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)

SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)

SRR189782

SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR040007(GSM532892)
G601T. (cervix)

SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)

SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)

SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)

SRR040010(GSM532895)
G529N. (cervix)

SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)

SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)

SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)

SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)

SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)

SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)

SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)

SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)

SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)

SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)

SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)

SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)

SRR037938(GSM510476)
293Red. (cell line)

SRR015365(GSM380330)
Memory B cells (MM139). (B cell)

SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)

SRR029132(GSM416761)
MB-MDA231. (cell line)

SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)

SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)

SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)

SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)

SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)

SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)

SRR040015(GSM532900)
G623T. (cervix)

SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)

SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)

SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)

SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)

SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)

GSM532872(GSM532872)
G652T. (cervix)

SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)

SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)

.................................................CTCGGGAGAAGGAACT.........................................................................................................................................................................................

125.00

8.50

75.00

49.00

1.00

.................................................CTCGGGAGAAGGAACTC........................................................................................................................................................................................

103.00

8.50

42.00

56.00

2.00

1.00

.................................................CTCGGGAGAAGGAACTCGG......................................................................................................................................................................................

31.00

8.50

7.00

13.00

3.00

1.00

.................................................CTCGGGAGAAGGAACTCG.......................................................................................................................................................................................

19.00

8.50

9.00

5.00

1.00

.................................................CTCGGGAGAAGGAAC..........................................................................................................................................................................................

8.50

1.00

3.00

1.50

0.50

......................................................................................................................................AATGAACTGTGAACTCTG..................................................................................................

3.00

0.00

1.00

....................................................................................................CTTATCTTTTTACATACT....................................................................................................................................

2.00

0.00

2.00

...........................................................................................................................CTAACTCTGAAAATGAACTGTGAACTCTG..................................................................................................

2.00

0.00

2.00

................................CTGGGATGGGGGTGGAACT.......................................................................................................................................................................................................

1.00

0.00

1.00

.......................................GGGGGTGGGGCTCGGTGGT................................................................................................................................................................................................

1.00

0.00

1.00

....................................................................................................................................AAAATGAACTGTGAACTGGA..................................................................................................

1.00

.................................................CTCGGGAGAAGGAACATAATGGA..................................................................................................................................................................................

1.00

..ACCAAAAAACATCAAACTTT....................................................................................................................................................................................................................................

1.00

0.00

1.00

.................................................CTCGGGAGAAGGAACTCA.......................................................................................................................................................................................

1.00

8.50

1.00

..............................................................................................................................................................................................................................CCAGCAACAGAGAATCAAG.........

1.00

0.00

1.00

..................................................................................................AACTTATCTTTTTACTCGA.....................................................................................................................................

1.00

0.00

1.00

.......................................GGGGGTGGGGCTCGGGGGC................................................................................................................................................................................................

1.00

0.00

1.00

.................................................CTCGGGAGAAGGAACTCGA......................................................................................................................................................................................

1.00

8.50

1.00

.................................................................................................................................................................................................TCCCCAGCACCTTCCCCAC......................................

1.00

0.00

1.00

Size

Perfect hit

Total Norm

Perfect Norm

SRR343336

SRR343337

SRR343334

SRR343335

SRR189785

SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)

SRR033728(GSM497073)
MALT (MALT413). (B cell)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)

SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)

SRR189782

SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR040007(GSM532892)
G601T. (cervix)

SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)

SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)

SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)

SRR040010(GSM532895)
G529N. (cervix)

SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)

SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)

SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)

SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)

SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)

SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)

SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)

SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)

SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)

SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)

SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)

SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)

SRR037938(GSM510476)
293Red. (cell line)

SRR015365(GSM380330)
Memory B cells (MM139). (B cell)

SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)

SRR029132(GSM416761)
MB-MDA231. (cell line)

SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)

SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)

SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)

SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)

SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)

SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)

SRR040015(GSM532900)
G623T. (cervix)

SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)

SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)

SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)

SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)

SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)

GSM532872(GSM532872)
G652T. (cervix)

SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)

SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)

..............................................................................................................................................GTCAAGAGAGCTCCAGTTCAC.......................................................................................

4.00

3.00

1.00

.........................................................................................................................................................CCAGCGTGGTCAAGAGAG...............................................................................

1.50

0.50

.........................................................................................................................................................ACCAGCGTGGTCAAGAGAG..............................................................................

1.50

0.50

................TCCCAGACAGTCAGATGATCTT....................................................................................................................................................................................................................

1.00

.......................................................................................................................................................CAGCGTGGTCAAGAGAGCT................................................................................

1.00

...............................................................................................................................................GCGTGGTCAAGAGAGCTCCAGTTCA..................................................................................

1.00

..........................................................................................................................................................TCTCTTGACCACGCTGGTA.............................................................................

1.00

0.00

1.00

.......................................................................................................GTTAGAGAAAGAGATGTAAAAAGAT..........................................................................................................................

1.00

.............................................................................................................................................TGGTCAAGAGAGCTCCAGTTCACA.....................................................................................

1.00

...................................................................................................................................................................AGAATTTTAGGTACCAGCGTG..................................................................

1.00

.......................................................................AAAACATTTGCCGTCATG.................................................................................................................................................................

1.00

0.00

1.00

...........................................................................................................................................................................AGAGATGGGAGAATTTTAGGTA.........................................................

1.00

..ACCAAAAAACATCAAAAA......................................................................................................................................................................................................................................

1.00

0.00

1.00

.............................................................................................................................................GTCAAGAGAGCTCCAGTTCACA.......................................................................................

1.00

............................................................................................................................................................................................AAGGTGCTGGGGAAGAGA............................................

1.00

................................................................................................................ATTTTCAGAGTTAGAGAAAGAGATG.................................................................................................................

1.00

.............................................................................................................................................................................................GGAAGGTGCTGGGGAAGAG..........................................

1.00

..........................GACTGTCTGGGATGGGGGTCA...........................................................................................................................................................................................................

1.00

0.00

1.00

.......................CCCCATCCCAGACAGTCAGA...............................................................................................................................................................................................................

1.00

..........................................................................................................................................GAGCTCCAGTTCACAGTT..............................................................................................

1.00

..........................................................................................................................................................ACCAGCGTGGTCAAGAGA..............................................................................

0.50

.................................................................................................ATGTAAAAAGATAAGTTA.......................................................................................................................................

0.50

.........................................................................................................................................................AGCGTGGTCAAGAGAG.................................................................................

0.50

....................................................................................................................................................................................GGGGAAGAGATGGGAGAA....................................................

0.20

.............................................................................................................................................................................TGGGAGAATTTTAGG..............................................................

0.11