ID: uc003oco.2_intron_5_0_chr6_32944242_f
GENE: (6)
chr6:32944192-32944388+


(3)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(14)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(6)
HELA 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(14)
SKIN 		(1)
XRN.ip

Sense strand
CCCCGCTCCTTGCTGTTACTGCAGCTCCTCCAGCCCAGCCCCTTGCCAAGGTATGATCTGTGGATTTCCTCTGGGCAGCAGGGAGGCAAGGGTCTTAAGTAAAGTGGGCTTGGAGTGACAGGTTCCCTATCTTGTTTCTTTCTGCAGAAAAAAGGCGTAAAGCGGAAAGCAGATACTACCACCCCTACACCTACAGC
......................................................(((((.((..((((((((....)).)))))).)).)))))...........(((((((......)))))))........................................................................
..................................................51..........................................................................127....................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189782DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925PAZD5TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
..................................................GTATGATCTGTGGATTTCCTCTGGGCAGCAGGGAGGCAAGGGTCTTAAGTAAAGTGGGCTTGGAGTGACAGGTTCCCTATCTTGTTTCTTTCTGCAG..................................................97112.0012.0012.00-------------------------------------------------------
..................................................GTATGATCTGTGGATTTCCTCTGGGCAGCAGGGAGGCAAGGGTCTTAAGTAAAGTGGGCTTGGAGTGACAG............................................................................7118.008.00---7.00----------------------------------1.00-----------------
...............................................................................................................................................................AAGCGGAAAGCAGATACTACCACCCCTACACCC.....334.000.00--4.00-----------------------------------------------------
..................................................GTATGATCTGTGGATTTCCTCTGGGCAGCAGGGAGGCAAGGGTCTTAAGTAAAGTGGGCTTGGAGTGACAGGTTCCCTATCTTGTT.............................................................8614.004.004.00-------------------------------------------------------
...............................................................................................................................................................AAGCGGAAAGCAGATACTACCACCCCTAC.........2912.002.00-2.00------------------------------------------------------
..................................................GTATGATCTGTGGATTTCCTCTGGGCAG.......................................................................................................................2812.002.00-------------1.00------------1.00-----------------------------
.....................................................................................................................................................................AAAGCAGATACTACCACCCCTATAC.......252.000.00------------2.00-------------------------------------------
................................GCCCAGCCCCTTGCCAAG...................................................................................................................................................1812.002.00------------------------1.00-----------------------1.00-------
.................ACTGCAGCTCCTCCAGCCCAGCCCCTCGCC......................................................................................................................................................302.000.00-2.00------------------------------------------------------
................................................AGGTATGATCTGTGGATT...................................................................................................................................1812.002.00-----2.00--------------------------------------------------
................................................................................................................................................................AGCGGAAAGCAGATACTACCACC..............2312.002.00----------1.00--------------------------------------1.00------
........................................................................................................TGGGCTTGGAGTGACAGGA..........................................................................192.000.00-----------------------------------------1.001.00-------------
.....................CAGCTCCTCCAGCCCAGCCCC...........................................................................................................................................................2111.001.00-------------------------1.00------------------------------
...................................................................................................................................................AAAAAAGGCGTAAAGCGGAAAGCAGA........................2611.001.00----1.00---------------------------------------------------
............................................................................................................................................................GTAAAGCGGAAAGCAGATACTACCACCC.............2811.001.00-----------------------------1.00--------------------------
..............................CAGCCCAGCCCCTTGCCAAG...................................................................................................................................................2011.001.00----1.00---------------------------------------------------
.................................................................................................................................................................GCGGAAAGCAGATACTACCA................2011.001.00-------------------------------------------1.00------------
.................................................................TTCCTCTGGGCAGCAGGGAGGCAAGGGTCAC.....................................................................................................311.000.00--1.00-----------------------------------------------------
...............................................................................................................................................................AAGCGGAAAGCAGATACTACCACCCCTACACCA.....331.000.00-1.00------------------------------------------------------
...............................................................................................................................................................AAGCGGAAAGCAGATACTACCACCC.............2511.001.00----1.00---------------------------------------------------
...................................................................CCTCTGGGCAGCAGGGAGGCAAGGGTCT......................................................................................................2811.001.00----------------------------------1.00---------------------
..................................................................TCCTCTGGGCAGCAGGGAGGCAAGGTCC.......................................................................................................281.000.00-1.00------------------------------------------------------
................................................................TTTCCTCTGGGCAGCAGGGAGGCAAGGGTCC......................................................................................................311.000.00-1.00------------------------------------------------------
............CTGTTACTGCAGCTCCTCCAGC...................................................................................................................................................................2211.001.00--------1.00-----------------------------------------------
.....CTCCTTGCTGTTACTGCAGCTCCTCCAG....................................................................................................................................................................2811.001.00------1.00-------------------------------------------------
..................................................GTATGATCTGTGGATTTA.................................................................................................................................181.000.00----------------------------------------1.00---------------
...........................................TGCCAAGGTATGATCTGTGGATTTCCTCTGG...........................................................................................................................3111.001.00---------1.00----------------------------------------------
.................ACTGCAGCTCCTCCAGCCCAGCCCCTTGCC......................................................................................................................................................3011.001.00--1.00-----------------------------------------------------
..............................................................................................................................................................AAAGCGGAAAGCAGATACTAC..................2111.001.00---------------------------------------1.00----------------
..................................................GTATGATCTGTGGATTTCCTCTGGGCAGCAG....................................................................................................................3111.001.00-----------------------------------------------1.00--------
...................................................TATGATCTGTGGATTTCCTCTGGGCAGCAG....................................................................................................................3011.001.00--------------1.00-----------------------------------------
.....................CAGCTCCTCCAGCCCAGCCCCTTGCCAAG...................................................................................................................................................2911.001.00-----1.00--------------------------------------------------
.................................CCCAGCCCCTTGCCAAGA..................................................................................................................................................1841.000.25-----------------1.00--------------------------------------
..........................................................................................................................................................................AGATACTACCACCCCTACACCTACAG.2611.001.00-------------------1.00------------------------------------
.................ACTGCAGCTCCTCCAGCCCAGCCCCTTGCCAAG...................................................................................................................................................3311.001.00----------------------------------------------------1.00---
.........................................................................................................GGGCTTGGAGTGACAGGT..........................................................................1811.001.00----------------1.00---------------------------------------
......................................................................................................................................................................AAGCAGATACTACCACCCC............1911.001.00--------------------1.00-----------------------------------
...............TTACTGCAGCTCCTCCAGCCCAGCCCCC..........................................................................................................................................................281.000.00-1.00------------------------------------------------------
......................................................................................................................CAGGTTCCCTATCTTGTTTCTTTCTGCAG..................................................2911.001.00---------------1.00----------------------------------------
...............TTACTGCAGCTCCTCCAGCCCAGCCCCTTGCC......................................................................................................................................................3211.001.00--1.00-----------------------------------------------------
..................................................GTATGATCTGTGGATTTCCTCTGGGCAGCAGGGAGGCAAGGGTCTTAAGTAAAGTGGGCTTGGAGTGACAGGT..........................................................................7311.001.00---------------------------------------------------1.00----
...........................................................GTGGATTTCCTCTGGGCAGC......................................................................................................................2011.001.00-----------1.00--------------------------------------------
..........................................................................................................................................................GCGTAAAGCGGAAAGCAGAT.......................2011.001.00-------------------------------1.00------------------------
.....CTCCTTGCTGTTACTGC...............................................................................................................................................................................1711.001.00---------------------1.00----------------------------------
...............TTACTGCAGCTCCTCCAGCCCAGCCCCTCGCC......................................................................................................................................................321.000.00-1.00------------------------------------------------------
...........................................................................................GTCTTAAGTAAAGTGGGCTTGGAGTGACAGG...........................................................................3111.001.00---------------------------1.00----------------------------
..........................................................................................................................................................GCGTAAAGCGGAAAG............................1511.001.00--------------------------------------------1.00-----------
.........................................................CTGTGGATTTCCTCTGGGCAGCAGGGAGGC..............................................................................................................3011.001.00---------------------------------------------1.00----------
..................................................GTATGATCTGTGGATTTCCTCTGGA..........................................................................................................................251.000.00------------------1.00-------------------------------------
..................................................................................................................................................GAAAAAAGGCGTAAAGCGGAAAG............................2311.001.00----------------------------------------------1.00---------
...................................................................................AGGCAAGGGTCTTAAGTAAAGTGGGCTTGGAGT.................................................................................3311.001.00-------1.00------------------------------------------------
.....................................................TGATCTGTGGATTTCCTCTGGGCAGCAG....................................................................................................................2811.001.00---------1.00----------------------------------------------
.................................................................................................................................................................GCGGAAAGCAGATACTACC.................1911.001.00----------1.00---------------------------------------------
..................................................GTATGATCTGTGGATTTCCTCTGGGCAGCAGGG..................................................................................................................3311.001.00------------------------------------1.00-------------------
...........GCTGTTACTGCAGCTCCTCCAGC...................................................................................................................................................................2311.001.00----1.00---------------------------------------------------
...............................................................................................................................................................................CTACCACCCCTACACCTA....1811.001.00-------------------------------------1.00------------------
.....................................................................................................................................................................AAAGCAGATACTACCACCCCTACACCC.....271.000.00--1.00-----------------------------------------------------
.......................................................................................................GTGGGCTTGGAGTGACAGG...........................................................................1911.001.00--------------------------------------------------1.00-----
................................................................................................................................................................AGCGGAAAGCAGATACTACCAC...............2211.001.00----1.00---------------------------------------------------
................TACTGCAGCTCCTCCAGCCCAGCCCCTCGCC......................................................................................................................................................311.000.00--1.00-----------------------------------------------------
..........................................................................................................................................TTTCTGCAGAAAAAAGGCGTAAAGCGGAA..............................2911.001.00------1.00-------------------------------------------------
..........................................................................................................................TTCCCTATCTTGTTTCTTTCTGCAG..................................................2511.001.00---------------------------------1.00----------------------
..............................................................................................................................CTATCTTGTTTCTTTCTGCAG..................................................2111.001.00------------------------------1.00-------------------------
.................................................................................................................................TCTTGTTTCTTTCTGCAG..................................................1811.001.00-------1.00------------------------------------------------
.................ACTGCAGCTCCTCCAGCCCAGCCCCCTGC.......................................................................................................................................................291.000.00-1.00------------------------------------------------------
..................................................GTATGATCTGTGGATTTAA................................................................................................................................191.000.00-----------------------------------1.00--------------------
..................................................GTATGATCTGTGGATTTCCTCTGGG..........................................................................................................................2511.001.00----------------------------1.00---------------------------
..................................................GTATGATCTGTGGATTTCCTCTGGGC.........................................................................................................................2611.001.00-----------1.00--------------------------------------------
..................................................................................................................................CTTGTTTCTTTCTGCAGA.................................................1820.500.50-------------0.50------------------------------------------
...........................................................GTGGATTTCCTCTGGGCA........................................................................................................................1830.330.33---------------0.33----------------------------------------
..................................CCAGCCCCTTGCCAAG...................................................................................................................................................1640.250.25------------------------------------------------------0.25-
.................................CCCAGCCCCTTGCCAAG...................................................................................................................................................1740.250.25-----------------------------------------------------0.25--
............................................................TGGATTTCCTCTGGGC.........................................................................................................................1650.200.20----------------0.20---------------------------------------

Antisense strand
CCCCGCTCCTTGCTGTTACTGCAGCTCCTCCAGCCCAGCCCCTTGCCAAGGTATGATCTGTGGATTTCCTCTGGGCAGCAGGGAGGCAAGGGTCTTAAGTAAAGTGGGCTTGGAGTGACAGGTTCCCTATCTTGTTTCTTTCTGCAGAAAAAAGGCGTAAAGCGGAAAGCAGATACTACCACCCCTACACCTACAGC
......................................................(((((.((..((((((((....)).)))))).)).)))))...........(((((((......)))))))........................................................................
..................................................51..........................................................................127....................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189782DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925PAZD5TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
.......................GCTCCTCCAGCCCAGACTA........................................................................................................................................................... 191.000.00--------1.00-----------------------------------------------
................................................................................................................................................................AGCGGAAAGCAGATAGCGG.................. 191.000.00-----------------------1.00--------------------------------
..............................................................................................................................CTATCTTGTTTCTTTCAAAA................................................... 201.000.00--------------------------------1.00-----------------------
......................................................................................................AGTGGGCTTGGAGTGACTC............................................................................ 191.000.00------1.00-------------------------------------------------
.......................................................................................................................TGCAGAAAGAAACAAGATAGGGAACCT................................................... 2711.001.00----------------------1.00---------------------------------
....................CTGGGCTGGAGGAGCTGC............................................................................................................................................................... 1830.330.33--------------0.33-----------------------------------------
.................CTGGAGGAGCTGCAGT.................................................................................................................................................................... 1680.120.12-------------------------------------------------------0.12