ID: uc003oco.2_intron_4_0_chr6_32943947_f
GENE: (5)
chr6:32943897-32944076+


(14)
B-CELL 		(1)
BRAIN 		(12)
BREAST 		(34)
CELL-LINE 		(3)
CERVIX 		(2)
FIBROBLAST 		(4)
HEART 		(3)
HELA 		(3)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(13)
SKIN 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
GGTAGTGACCATCCCTAAGAACAGCCACAAGAAGGGGGCCAAGTTGGCAGGTAGGAAGAGTGGGAGTTTTGCAAATGGACAACTAAAGATGGGGAAGAGAATCAAACTACACTTTTTTCCTTTTTTCTAGCGCTCCAGGGCAGTGTTACCAGTGCCCATCAGGTGCCTGCCGTCTCTTCT
...................................................((((((((.(((..((((.......))))..))).....((..(((((............)))))..)).))))))))...................................................
..................................................51.............................................................................130................................................
SizePerfect hitTotal NormPerfect NormSRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040042(GSM532927)
G428N. (cervix)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR029124(GSM416753)
HeLa. (hela)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR040036(GSM532921)
G243N. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191439(GSM715549)
176genomic small RNA (size selected RNA from . (breast)		SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................GTAGGAAGAGTGGGAGTTTTG.............................................................................................................21131.0031.008.001.003.003.00-5.00-------1.00------1.00--1.001.001.00-1.00----------------------------1.00----1.00-1.00------------1.00-------1.00-----------
..................................................GTAGGAAGAGTGGGAGTTTT..............................................................................................................20116.0016.005.00-2.002.00-1.00------2.001.001.00---1.00-----------------------------------------------1.00-----------------------------
..................................................GTAGGAAGAGTGGGAGTTT...............................................................................................................1919.009.003.002.00-2.00--------------------1.00---------------------------------1.00-------------------------------------
..................................................GTAGGAAGAGTGGGAGTTTTGCAAATGG......................................................................................................2818.008.00------4.00--3.00--------------------------------------------------------------1.00-----------------------
..................................................GTAGGAAGAGTGGGAGTTTTGC............................................................................................................2217.007.00------------------2.00--1.00----1.00---------------------------------1.00-1.00------------------1.00--------------
................................AGGGGGCCAAGTTGGCAG..................................................................................................................................1817.007.00-----------2.00---------------------1.00---1.00--------------1.00----------------1.00-1.00------------------------
.................................GGGGGCCAAGTTGGCAG..................................................................................................................................1733.333.33------------------------------0.33------------------------------------------------------0.67--0.330.330.330.330.330.330.33-
..................................................GTAGGAAGAGTGGGAGTT................................................................................................................1813.003.00--1.00--------------------1.00-----------------------------------------1.00------------------------------
........................................................................................................................................AGGGCAGTGTTACCAGTG..........................1813.003.00----------------------2.00---------------------------1.00---------------------------------------------
..................................................GTAGGAAGAGTGGGAGTTTTGCA...........................................................................................................2313.003.00--------------1.00-----------1.00------------------------------------------------1.00--------------------
..................................GGGGCCAAGTTGGCAGGTAGGAAG..........................................................................................................................2413.003.00-3.00----------------------------------------------------------------------------------------------
...............................AAGGGGGCCAAGTTGGCAGGTAGGAAG..........................................................................................................................2713.003.00----3.00-------------------------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGTTTTT.............................................................................................................2112.0016.00---1.00---------------------1.00----------------------------------------------------------------------
...................................................TAGGAAGAGTGGGAGTTTTG.............................................................................................................2012.002.00-2.00----------------------------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGGTTT..............................................................................................................202.000.001.00--1.00--------------------------------------------------------------------------------------------
....................................................................TTGCAAATGGACAACTAAAGATG.........................................................................................2312.002.00---------------2.00--------------------------------------------------------------------------------
................................................AGGTAGGAAGAGTGGGAGTTTTGC............................................................................................................2412.002.00-2.00----------------------------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGTTTTGAAA..........................................................................................................2412.0031.001.00---------------------------------------------------------------------1.00-------------------------
..................................................GTAGGAAGAGTGGGAGTTTTGCAA..........................................................................................................2412.002.00--1.00-----------------------------------------1.00---------------------------------------------------
....................ACAGCCACAAGAAGGGGGCCAAGTTGG.....................................................................................................................................2712.002.00--------2.00---------------------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGTTTTGCAAAA........................................................................................................2612.001.00-2.00----------------------------------------------------------------------------------------------
......................AGCCACAAGAAGGGGGCCAAGTTGGCAG..................................................................................................................................2812.002.00------2.00-----------------------------------------------------------------------------------------
..............................................................................................................................................................TCAGGTGCCTGCCGTCCCT...191.000.00----1.00-------------------------------------------------------------------------------------------
.....................................................................................................TCAAACTACACTTTTTTCCTTTCTAG.....................................................261.000.00----------------------------1.00-------------------------------------------------------------------
...............................................................................................................................................TGTTACCAGTGCCCATCAG..................1911.001.00--------------------------------------1.00---------------------------------------------------------
.................................GGGGGCCAAGTTGGCAGCGC...............................................................................................................................2031.003.33-------------------------------------------------1.00----------------------------------------------
..................GAACAGCCACAAGAAGGGGGCCA...........................................................................................................................................2311.001.00-----------------------------------------------------------------------------1.00------------------
..................................................................TTTTGCAAATGGACAACTAAAG............................................................................................2211.001.00----------------------------------------------------------------1.00-------------------------------
..............................................................................................................ACTTTTTTCCTTTTTTCTGAG.................................................211.000.00----1.00-------------------------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGTTTTA.............................................................................................................2111.0016.00--1.00---------------------------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGTTTTGCAAATGGACAACT................................................................................................3411.001.00-----------------------------------------------------------------------------------1.00------------
................AAGAACAGCCACAAGAAGGGGGCCAAGT........................................................................................................................................2811.001.00------------------------------------------------1.00-----------------------------------------------
..................................................................................................GAATCAAACTACACTTTT................................................................1811.001.00-----------1.00------------------------------------------------------------------------------------
..........................................GTTGGCAGGTAGGAAGA.........................................................................................................................1711.001.00------------------------------1.00-----------------------------------------------------------------
...................................................................................................................................................................TGCCTGCCGTCTCTTCCCTC201.000.00-------------------1.00----------------------------------------------------------------------------
..................GAACAGCCACAAGAAGG.................................................................................................................................................1711.001.00---------------1.00--------------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGTTTAAA............................................................................................................2211.009.001.00-----------------------------------------------------------------------------------------------
.........CATCCCTAAGAACAGCCACAAGAAGGG................................................................................................................................................2711.001.00-------------------------------------------------------------------------------1.00----------------
...............................AAGGGGGCCAAGTTGGCAGCGGT..............................................................................................................................231.000.00--------------------------------------------------------------------------1.00---------------------
........................................................................AAATGGACAACTAAAGATGGGGAA....................................................................................2411.001.00------------------------------------------1.00-----------------------------------------------------
................................AGGGGGCCAAGTTGGCGGG.................................................................................................................................191.000.00-------------------------------------------------------1.00----------------------------------------
...................................................TAGGAAGAGTGGGAGTTTTGCA...........................................................................................................2211.001.00-1.00----------------------------------------------------------------------------------------------
............................................................................................................ACACTTTTTTCCTTTTTTTGAG..................................................221.000.00----1.00-------------------------------------------------------------------------------------------
...........................................................................................GGGAAGAGAATCAAACTACACTTTTTT..............................................................2711.001.00--------------------------------------------------------------------------------1.00---------------
...............TAAGAACAGCCACAAGAAGGGG...............................................................................................................................................2211.001.00--1.00---------------------------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGTTTTTG............................................................................................................2211.0016.00---1.00--------------------------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGTTA...............................................................................................................1911.003.00-----------------------------------------------------1.00------------------------------------------
......GACCATCCCTAAGAACAGCCACAAGAAG..................................................................................................................................................2811.001.00----------------------------------------------1.00-------------------------------------------------
..........................ACAAGAAGGGGGCCAAGTTGGCAG..................................................................................................................................2411.001.00-----------------1.00------------------------------------------------------------------------------
.......................................CAAGTTGGCAGGTAGGAA...........................................................................................................................1811.001.00-------------------------------1.00----------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGTTTTGAA...........................................................................................................2311.0031.00--------------1.00---------------------------------------------------------------------------------
.........................................................................................................ACTACACTTTTTTCCTTTTTTCT....................................................2311.001.00-------------------1.00----------------------------------------------------------------------------
.........................................AGTTGGCAGGTAGGAAGAGTGGGAG..................................................................................................................2511.001.00-------------------------------------------------------------------1.00----------------------------
.............................................................................................................CACTTTTTTCCTTTTTTTAG...................................................201.000.00-------1.00----------------------------------------------------------------------------------------
...............................................CAGGTAGGAAGAGTGGGAGTTTCG.............................................................................................................241.000.00----------------------------------1.00-------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGTTTTGCAAA.........................................................................................................2511.001.00---------------------------------------------------1.00--------------------------------------------
...............................AAGGGGGCCAAGTTGGCAGCGC...............................................................................................................................221.000.00-----------------------------------------------------------1.00------------------------------------
....................................................AGGAAGAGTGGGAGTTTTGCAAATGGACAACT................................................................................................3211.001.00----------------1.00-------------------------------------------------------------------------------
......................................CCAAGTTGGCAGGTAGGAAGA.........................................................................................................................2111.001.00------------------------------------------------------------------------------1.00-----------------
........................................................AGAGTGGGAGTTTTGTGGC.........................................................................................................191.000.00------------------------------------------------------1.00-----------------------------------------
..............CTAAGAACAGCCACAAGATG..................................................................................................................................................201.000.00---------------------------------------------1.00--------------------------------------------------
.............................................................................................................CACTTTTTTCCTTTTTTCTG...................................................201.000.00----------------------------1.00-------------------------------------------------------------------
....................................................................................AAAGATGGGGAAGAGAATCATA..........................................................................221.000.00----------1.00-------------------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGTTTTGTT...........................................................................................................2311.0031.00--------------------1.00---------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGTTTGG.............................................................................................................2111.009.00-------------1.00----------------------------------------------------------------------------------
.............................................................................................................CACTTTTTTCCTTTTTTTTTG..................................................211.000.00---------------------------------------1.00--------------------------------------------------------
....................................................................................................ATCAAACTACACTTTTTTCCAG..........................................................221.000.00-------1.00----------------------------------------------------------------------------------------
................................AGGGGGCCAAGTTGGCAGCGC...............................................................................................................................2111.007.00-----------------------------------1.00------------------------------------------------------------
................................................................................................................TTTTTTCCTTTTTTCGGTG.................................................191.000.00----1.00-------------------------------------------------------------------------------------------
...................................................................................................AATCAAACTACACTTTTTTCCTTTTTTCCAG..................................................311.000.00-------1.00----------------------------------------------------------------------------------------
...............................................................................................................CTTTTTTCCTTTTTTCCTGT.................................................201.000.00----1.00-------------------------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGGTTA..............................................................................................................201.000.00---------------------------1.00--------------------------------------------------------------------
...AGTGACCATCCCTAAGAACAGCCACA.......................................................................................................................................................2611.001.00-----------------------------------------------1.00------------------------------------------------
................AAGAACAGCCACAAGAAGGGGGCCAAGTT.......................................................................................................................................2911.001.00-------------------------------------------------------------------------1.00----------------------
........................................................................................................AACTACACTTTTTTCAAG..........................................................181.000.00-------1.00----------------------------------------------------------------------------------------
.....................................GCCAAGTTGGCAGGTAGGA............................................................................................................................1911.001.00------------1.00-----------------------------------------------------------------------------------
................................................................................................................TTTTTTCCTTTTTTCTAGTTG...............................................211.000.00-------1.00----------------------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGTTTTGCAAATGGACATAGA...............................................................................................351.000.00-----------------------------1.00------------------------------------------------------------------
.........................................................................AATGGACAACTAAAGATGGGGAAGAGA................................................................................2711.001.00----------1.00-------------------------------------------------------------------------------------
................AAGAACAGCCACAAGAAGGGGGCCAAGTTGGCAG..................................................................................................................................3411.001.00-------------------------------------------1.00----------------------------------------------------
...............TAAGAACAGCCACAAGAAGGGGGCCAAGTTGGCA...................................................................................................................................3411.001.00--------------------------------------------------------------------1.00---------------------------
.......ACCATCCCTAAGAACAGCCACA.......................................................................................................................................................2211.001.00-----------------1.00------------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGTTTA..............................................................................................................2011.009.00--1.00---------------------------------------------------------------------------------------------
................AAGAACAGCCACAAGAAGGGG...............................................................................................................................................2111.001.00----------1.00-------------------------------------------------------------------------------------
.......................GCCACAAGAAGGGGGCCAAGTT.......................................................................................................................................2211.001.00-----------------1.00------------------------------------------------------------------------------
.....TGACCATCCCTAAGAACAGCCAC........................................................................................................................................................2311.001.00----------1.00-------------------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGGTT...............................................................................................................191.000.001.00-----------------------------------------------------------------------------------------------
................................................................................................................................AGCGCTCCAGGGCAGTGT..................................1811.001.00----------------------------------------1.00-------------------------------------------------------
....................................................AGGAAGAGTGGGAGTTTTGCAA..........................................................................................................2211.001.00------------------------------------1.00-----------------------------------------------------------
.....................CAGCCACAAGAAGGGGGCCAAGT........................................................................................................................................2311.001.00--------1.00---------------------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGTTTGC.............................................................................................................2111.009.00----------------1.00-------------------------------------------------------------------------------
..........................................GTTGGCAGGTAGGAAGAGTGGGAGTTTTGCAAAT........................................................................................................3411.001.00-----------------------------1.00------------------------------------------------------------------
..............................................................................................................ACTTTTTTCCTTTTTTCTTG..................................................201.000.00-------1.00----------------------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGTTTTGCAAAAGG......................................................................................................2811.001.00---------1.00--------------------------------------------------------------------------------------
.................AGAACAGCCACAAGAAGGGGGCCAAGTCGGC....................................................................................................................................311.000.00----1.00-------------------------------------------------------------------------------------------
.........................................................................AATGGACAACTAAAGATGGGGAAGAGAA...............................................................................2811.001.00-----------------------------------------1.00------------------------------------------------------
................................AGGGGGCCAAGTTGGCAGCG................................................................................................................................2011.007.00--------1.00---------------------------------------------------------------------------------------
........................................................................................................................................................TGCCCATCAGGTGCCTGCCGTCTCTCC.271.000.00----------------1.00-------------------------------------------------------------------------------
...................AACAGCCACAAGAAGGGGG..............................................................................................................................................1911.001.00----------------------------------------------------------------------------------1.00-------------
........................................................................................ATGGGGAAGAGAATCAAACTACACTTT.................................................................2711.001.00---------------------1.00--------------------------------------------------------------------------
..................................................GTAGGAAGAGTGGGAGT.................................................................................................................1720.500.50--------------------------------------------------------------------------------------0.50---------
..............................................................................................................ACTTTTTTCCTTTTTTCTA...................................................1920.500.50---------------------------------------------------------------------------------------0.50--------
..................................GGGGCCAAGTTGGCAG..................................................................................................................................1670.290.29------------------------------0.14----------------------------------------------------------------0.14
...........................................TTGGCAGGTAGGAAG..........................................................................................................................1580.120.12-------------------------------0.12----------------------------------------------------------------

Antisense strand
GGTAGTGACCATCCCTAAGAACAGCCACAAGAAGGGGGCCAAGTTGGCAGGTAGGAAGAGTGGGAGTTTTGCAAATGGACAACTAAAGATGGGGAAGAGAATCAAACTACACTTTTTTCCTTTTTTCTAGCGCTCCAGGGCAGTGTTACCAGTGCCCATCAGGTGCCTGCCGTCTCTTCT
...................................................((((((((.(((..((((.......))))..))).....((..(((((............)))))..)).))))))))...................................................
..................................................51.............................................................................130................................................
SizePerfect hitTotal NormPerfect NormSRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040042(GSM532927)
G428N. (cervix)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR029124(GSM416753)
HeLa. (hela)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR040036(GSM532921)
G243N. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191439(GSM715549)
176genomic small RNA (size selected RNA from . (breast)		SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................ACAACTAAAGATGGGGGA.................................................................................... 181.000.00---------------------------------------------------------1.00--------------------------------------
.................AGAACAGCCACAAGAGAC................................................................................................................................................. 181.000.00--------------------------------1.00---------------------------------------------------------------