ID: uc003obj.2_intron_0_0_chr6_32485530_r
GENE: (5)
chr6:32485480-32485880-


(6)
B-CELL
(3)
BRAIN
(6)
BREAST
(8)
CELL-LINE
(3)
CERVIX
(5)
HEART
(1)
HELA
(3)
LIVER
(2)
OTHER
(15)
SKIN
(1)
TESTES
(3)
UTERUS

Sense strand
TGTATATCTTTTCCTCTTTTTCCCAGGGCACTCTGGACTTCACCCAACAGGTAATACCTTTTAATCCTCTTTTAGAAACAGATTCAGTTTTCCTAGAATGATGGCAGAGGTGATAAGGCATGAGACAGAAATAGCAGGAAAGACTTTGGATCCAAATTCCTGATCAGGCAATTTATACCAAAACTCCTCCTCTCCACTTAGGCCTGTGCTCTGCAGGAGTATTGGTTCAGGGAGACTTAGGAACTTGTTTTTCTTCTTCCTGCAGTGCTCTCATCTGAGTCCTTGAAAGAGAGGAAAAGAAGCTGTTAGTGGAACCAGGTCTGAAAACAACACTTTCCTCTCTCTCTGCAGGACTCGTGAGCTGAAGTGCAGATGACCACATTCAAGGGGGAACCTTCTGC
............................................................................................................................................................................................................................................................................................((.((((((((((......((((..((((......))))..))))....)))))))))).)).......................................................
......................................................................................................................................................................................................................................................................................279.....................................................................351................................................
SizePerfect hitTotal NormPerfect NormSRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577746(Rovira)
total RNA. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR029128(GSM416757)
H520. (cell line)
SRR343335SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577580(Rovira)
total RNA. (breast)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343336SRR040016(GSM532901)
G645N. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM532881(GSM532881)
G696N. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
...........................................................................................................................................................................................................................................................................................TGAAAGAGAGGAAAAGAAGCTGTT..............................................................................................24111.0011.001.001.00--2.00-1.003.00-----2.00--------------------1.00---------------------------
...........................................................................................................................................................................................................................................................................................TGAAAGAGAGGAAAAGAAGCTGT...............................................................................................2317.007.002.00--1.00--1.00-------2.00--------------1.00--------------------------------
..........................................................................................................................................................................................................................................................................................TTGAAAGAGAGGAAAAGAAGCTGT...............................................................................................2414.004.001.001.00-----------------1.00----------1.00-------------------------------
...........................................................................................................................................................................................................................................................................................TGAAAGAGAGGAAAAGAAGCTG................................................................................................2213.003.001.00--------------------1.00--------------------1.00-------------------
..........................................................................................................................................................................................................................................................................................TTGAAAGAGAGGAAAAGAAGCT.................................................................................................2213.003.003.00-------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................ACACTTTCCTCTCTCTCTGCAGT.................................................232.000.00---2.00----------------------------------------------------------
............................................................................................................................................................................................................................................................................................GAAAGAGAGGAAAAGAAGCTGTTA.............................................................................................2412.002.00-2.00------------------------------------------------------------
.................................................................................................................................................................................CCAAAACTCCTCCTCTTG..............................................................................................................................................................................................................182.000.00------------2.00-------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................TGAGCTGAAGTGCAGATGACCA......................2212.002.00----------------1.001.00--------------------------------------------
................................................................................................................................................................................ACCAAAACTCCTCCTAAG...............................................................................................................................................................................................................181.000.00---------------------------1.00----------------------------------
.........................................................................................................................................................................................................................................................................................................................................ACACTTTCCTCTCTCTCTG.....................................................1911.001.00-----1.00--------------------------------------------------------
........................................................................................................................................................................................TCCTCCTCTCCACTTTATT......................................................................................................................................................................................................191.000.00------------------1.00-------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................TGAAGTGCAGATGACCACAT...................2011.001.00----------------------------------------1.00---------------------
...............................................................................................................................................................................................................................................................................................AGAGAGGAAAAGAAGCTTG...............................................................................................191.000.00--------------------------1.00-----------------------------------
...........................................................................................................................................................................................................................................................................................TGAAAGAGAGGAAAAGAAGCTGTA..............................................................................................2411.007.001.00-------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................TGAGCTGAAGTGCAGATTATA.......................211.000.00------------------------------------1.00-------------------------
........................................................................................................................................................................................................................................................................................................................................AACACTTTCCTCTCTCTGCAG....................................................211.000.00-------------------------1.00------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................GCTGAAGTGCAGATGACC.......................1811.001.00--------1.00-----------------------------------------------------
........................................................................................................................................................CAAATTCCTGATCAGGC........................................................................................................................................................................................................................................1711.001.00--------1.00-----------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................AGGACTCGTGAGCTGA....................................1611.001.00----------1.00---------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................AAGTGCAGATGACCACATTCA................2111.001.00-----1.00--------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................CAGGACTCGTGAGCTGAAGTGCAGATGACCAC.....................3211.001.00--1.00-----------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................GACTCGTGAGCTGAAGTGCAGATGAC........................2611.001.00------1.00-------------------------------------------------------
..........................................................................................................................................................................................................................................................................................TTGAAAGAGAGGAAAAGAAGCTG................................................................................................2311.001.00-------------------------------------------1.00------------------
..........................................................................................TCCTAGAATGATGGCAGA.....................................................................................................................................................................................................................................................................................................1811.001.00------------------------1.00-------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................AGCTGAAGTGCAGATGACCACA....................2211.001.00--1.00-----------------------------------------------------------
...........................................................................................................................................................................................................................................................................................TGAAAGAGAGGAAAAGAAGCT.................................................................................................2111.001.00----1.00---------------------------------------------------------
..........................GGCACTCTGGACTTCACCCAACAG...............................................................................................................................................................................................................................................................................................................................................................2411.001.00---------------1.00----------------------------------------------
........................................................................................................................................................................................................................................................................................................................................AACACTTTCCTCTCTCTCTGA....................................................211.000.00----------------------1.00---------------------------------------
...........................................................................................................................................................................................................................................................................................TGAAAGAGAGGAAAAGAAGCTGTG..............................................................................................2411.007.001.00-------------------------------------------------------------
........................AGGGCACTCTGGACTTCACCCAACAGGAC............................................................................................................................................................................................................................................................................................................................................................291.000.00---------1.00----------------------------------------------------
.............................ACTCTGGACTTCACCCAACAGGTC............................................................................................................................................................................................................................................................................................................................................................241.000.00---------1.00----------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................AGGACTCGTGAGCTGAAGTGCAGATGACC.......................2911.001.00----------1.00---------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................TGAGCTGAAGTGCAGATGACAC......................221.000.00-----------------------------------------1.00--------------------
.....................................................................................................................................................................................................................................................................................................................................................................TGAGCTGAAGTGCAGATA..........................181.000.00----------------------------1.00---------------------------------
...........................................................................................................................................................................................................................................................................................TGAAAGAGAGGAAAAGAAGCTGTTT.............................................................................................2511.0011.00--------------------1.00-----------------------------------------
........................AGGGCACTCTGGACTTCACC.....................................................................................................................................................................................................................................................................................................................................................................2011.001.00--1.00-----------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................TAGTGGAACCAGGTCTGAAAAC.........................................................................2211.001.001.00-------------------------------------------------------------
....................................................................................................................................................................................AAACTCCTCCTCTCCCCC...........................................................................................................................................................................................................181.000.00-------------------------------1.00------------------------------
........TTTTCCTCTTTTTCCCAG.......................................................................................................................................................................................................................................................................................................................................................................................1830.670.67--------------------------------------------------0.33------0.33----
............................................................................................................................................................................................................................................................................................................................................................CAGGACTCGTGAGCT......................................1520.500.50--------------------------------------------0.50-----------------
................................CTGGACTTCACCCAACAG...............................................................................................................................................................................................................................................................................................................................................................1820.500.50------------------------------------------------0.50-------------
.....................................................................................................................................................................................................................................................................................AGTCCTTGAAAGAGAG............................................................................................................1620.500.50-----------------------------------------------0.50--------------
................................................................................................................ATAAGGCATGAGACAGAAAT.............................................................................................................................................................................................................................................................................2030.330.33---------------------------------------------------0.33----------
.........................................................................................................................................................................................................................................................................................................................................................................CTGAAGTGCAGATGAC........................1630.330.33--------0.33-----------------------------------------------------
..........................................................................................................................................................................................................................................................................................TTGAAAGAGAGGAAAAG......................................................................................................1750.200.20-------------------------------------------------------------0.20
..........................................................................................................................................................................................................................................................................................................................................................................TGAAGTGCAGATGAC........................1570.140.14---------------0.14----------------------------------------------

Antisense strand
TGTATATCTTTTCCTCTTTTTCCCAGGGCACTCTGGACTTCACCCAACAGGTAATACCTTTTAATCCTCTTTTAGAAACAGATTCAGTTTTCCTAGAATGATGGCAGAGGTGATAAGGCATGAGACAGAAATAGCAGGAAAGACTTTGGATCCAAATTCCTGATCAGGCAATTTATACCAAAACTCCTCCTCTCCACTTAGGCCTGTGCTCTGCAGGAGTATTGGTTCAGGGAGACTTAGGAACTTGTTTTTCTTCTTCCTGCAGTGCTCTCATCTGAGTCCTTGAAAGAGAGGAAAAGAAGCTGTTAGTGGAACCAGGTCTGAAAACAACACTTTCCTCTCTCTCTGCAGGACTCGTGAGCTGAAGTGCAGATGACCACATTCAAGGGGGAACCTTCTGC
............................................................................................................................................................................................................................................................................................((.((((((((((......((((..((((......))))..))))....)))))))))).)).......................................................
......................................................................................................................................................................................................................................................................................279.....................................................................351................................................
SizePerfect hitTotal NormPerfect NormSRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577746(Rovira)
total RNA. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR029128(GSM416757)
H520. (cell line)
SRR343335SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577580(Rovira)
total RNA. (breast)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343336SRR040016(GSM532901)
G645N. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM532881(GSM532881)
G696N. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
..............................................................................................................................................................................................TCTCCACTTAGGCCTAGG................................................................................................................................................................................................. 182.330.00----------------------------------------------0.33--0.33--0.330.33--0.33-0.33-0.33-
.................................................................................................................................................................................................................................................AACTTGTTTTTCTTCGTT.............................................................................................................................................. 182.000.00-----------2.00--------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................GTGAGCTGAAGTGCAGTGC.......................... 191.000.00-------------------------------------1.00------------------------
...................................................................................................................................................................................................................................................................................................................................................................................GATGACCACATTCAACATG........... 191.000.00-----1.00--------------------------------------------------------
...................................................................................................................................................................................AAAACTCCTCCTCTCCTTT........................................................................................................................................................................................................... 191.000.00---------------------------------------1.00----------------------
......................................................................................................................................................................................................................................................................................................................................ACAACACTTTCCTCTCGCTC....................................................... 201.000.00--------------------------------------1.00-----------------------
..............................................................................................................................................................................................TCTCCACTTAGGCCTAGGG................................................................................................................................................................................................ 191.000.00--------------------------------------------0.33---------0.330.33------
...........................................................................................................................................................................................................................................................................................................................................ACTTTCCTCTCTCTCTATAA.................................................. 201.000.00-----------------------1.00--------------------------------------
......................CCAGGGCACTCTGGACTCTTC...................................................................................................................................................................................................................................................................................................................................................................... 211.000.00---------------------------------1.00----------------------------
..................TTTCCCAGGGCACTCCG.............................................................................................................................................................................................................................................................................................................................................................................. 171.000.00--------------------------------1.00-----------------------------
..............................................................................CAGATTCAGTTTTCCTACCC............................................................................................................................................................................................................................................................................................................... 201.000.00-----------------------------------1.00--------------------------
..............................................................................................................................................................................................TCTCCACTTAGGCCTAG.................................................................................................................................................................................................. 170.670.00---------------------------------------------0.33-------------0.33--
..............................................................................................................................................................................................AGGCCTAAGTGGAGA.................................................................................................................................................................................................... 1530.330.33---------------------------------------------0.33----------------
..............................................................................................................................................................................................TCTCCACTTAGGCCTAGT................................................................................................................................................................................................. 180.330.00--0.33-----------------------------------------------------------
............................................................................................................................................................................................................................................................CAGATGAGAGCACTGCAGGAAGAAG............................................................................................................................ 2530.330.33----------------------------------------------0.33---------------