ID: uc003obb.2_intron_26_0_chr6_32189103_r.5p
GENE: (3)
chr6:32190088-32190337-


(5)
B-CELL
(1)
BRAIN
(1)
BREAST
(6)
CELL-LINE
(1)
CERVIX
(3)
LIVER
(2)
OTHER
(2)
RRP40.ip
(29)
SKIN
(1)
UTERUS

Sense strand
CATCCAGGCCTCGGGCCGCCCACAGTGCTCCTGCATGCCTGGATGGACAGGTAAGCGCTGCTGGGGGCAGCCAGGAGGGGACAGGCAGGAGCAATGGGCTAGGCTGTGGGTGGGGAAGATAGAACTGGAGCCTGAGAAACTGCAAGCCCTTTGAAGACAGAAGCCATGAGAATCAACATGCCAATTCTTGGCAATCCACTTACCCACAACCAACATTCACCAGCATGGTTGTACTGATTGCTAAAATGTT
...................................................................................................((((((.(((...............))).))))))....................................................................................................................
.................................................................................................98..............................................146......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................................TGGAGCCTGAGAAACGG............................................................................................................1714.000.003.001.00---1.00--2.00-1.00--1.001.00---1.00-1.00--------------1.00-----1.00-------
.............................................................................................................................TGGAGCCTGAGAAACG.............................................................................................................1614.000.002.00--2.00-1.00-----1.00-1.001.00--1.00-----------1.00----1.00-1.00-1.001.00---------
.............................................................................................................................TGGAGCCTGAGAAACGGC...........................................................................................................186.000.00-2.00--------1.00-----1.00-------------1.00------------1.00-----
............................................................................................................................CTGGAGCCTGAGAAACGG............................................................................................................1864.000.17-------2.00-------1.00---1.00-----------------------------
......................................................................................................GCTGTGGGTGGGGAATTTT.................................................................................................................................193.000.00--3.00----------------------------------------------
..................................................................................................................GAAGATAGAACTGGAAGAG.....................................................................................................................191.000.00--------------------------1.00----------------------
............................................................................................................................CTGGAGCCTGAGAAACG.............................................................................................................1761.000.17-------------------------------------1.00-----------
...................................................................................................TAGGCTGTGGGTGGGAAA.....................................................................................................................................181.000.00---------------------------------------------1.00---
...............................................................................................................GGGGAAGATAGAACTGGTCT.......................................................................................................................201.000.00----------------------------------------1.00--------
...................................................................................................TAGGCTGTGGGTGGGTGT.....................................................................................................................................181.000.00----1.00--------------------------------------------
................................................................................................................................AGCCTGAGAAACTGCTACC.......................................................................................................191.000.00---------------------------------1.00---------------
..............................................................................................TGGGCTAGGCTGTGGGGAC.........................................................................................................................................191.000.00-------------------------------1.00-----------------
.....................................................................................................................................GAGAAACTGCAAGCCCTTTGAAGACAGAAGCC.....................................................................................3211.001.00-----------1.00-------------------------------------
...................................................................................................TAGGCTGTGGGTGGGTGTG....................................................................................................................................191.000.00----1.00--------------------------------------------
...............CCGCCCACAGTGCTCTCC.........................................................................................................................................................................................................................181.000.00---------------------------1.00---------------------
.............................................................................................................................TGGAGCCTGAGAAACTGCTAC........................................................................................................211.000.00----------------------1.00--------------------------
..........................................................................................................................................................................AATCAACATGCCAATATAG.............................................................191.000.00------1.00------------------------------------------
..........................................................................................................................AACTGGAGCCTGAGAAAC..............................................................................................................1811.001.00------------------------1.00------------------------
...................................................................................................TAGGCTGTGGGTGGGTTTG....................................................................................................................................191.000.00------------------------------------------1.00------
................................................................................................................................AGCCTGAGAAACTGCTAC........................................................................................................181.000.00---------------------1.00---------------------------
.......................................................................................................................................................TGAAGACAGAAGCCATGAGA...............................................................................2021.001.00-----------------------1.00-------------------------
.............................................................................................................................TGGAGCCTGAGAAACGGCT..........................................................................................................191.000.00----------------------------1.00--------------------
...........................................................................AGGGGACAGGCAGGAGCAG............................................................................................................................................................191.000.00---------1.00---------------------------------------
..............................................................................................................................GGAGCCTGAGAAACTGC...........................................................................................................1750.400.40---------------0.20------------------------------0.20--
............................................................................................................................CTGGAGCCTGAGAAAC..............................................................................................................1660.170.17-----------------------------------------------0.17-

Antisense strand
CATCCAGGCCTCGGGCCGCCCACAGTGCTCCTGCATGCCTGGATGGACAGGTAAGCGCTGCTGGGGGCAGCCAGGAGGGGACAGGCAGGAGCAATGGGCTAGGCTGTGGGTGGGGAAGATAGAACTGGAGCCTGAGAAACTGCAAGCCCTTTGAAGACAGAAGCCATGAGAATCAACATGCCAATTCTTGGCAATCCACTTACCCACAACCAACATTCACCAGCATGGTTGTACTGATTGCTAAAATGTT
...................................................................................................((((((.(((...............))).))))))....................................................................................................................
.................................................................................................98..............................................146......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................................TGTTGATTCTCATGG........................................................................ 1572.002.00------------2.00------------------------------------
..........................................................................................................................................ACTGCAAGCCCTTTGGCAG............................................................................................. 192.000.00------1.00-------------------------1.00----------------
....................................................................................................................................................................................................CACTTACCCACAACCTGT.................................... 181.000.00----1.00--------------------------------------------
...............................................................................................................................................................................................................AACCAACATTCACCAGCTGA....................... 201.000.00--------------------------------------------1.00----
...............CCGCCCACAGTGCTCGGC......................................................................................................................................................................................................................... 181.000.00---1.00---------------------------------------------
..........................................................................................GCAATGGGCTAGGCTA................................................................................................................................................ 161.000.00---------1.00---------------------------------------
.........................TGCTCCTGCATGCCTTAA............................................................................................................................................................................................................... 181.000.00-------------------------1.00-----------------------
.................................................................................................................................................TCTGTCTTCAAAGGGC......................................................................................... 1670.140.14------------------------------------------------0.14