ID: uc003oav.1_intron_0_0_chr6_32154252_r
GENE: PBX2(8)
chr6:32154202-32154430-


(1)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(7)
BREAST 		(11)
CELL-LINE 		(9)
CERVIX 		(2)
HEART 		(5)
LIVER 		(2)
OTHER 		(6)
SKIN 		(1)
TESTES

Sense strand
ATGGGGATAACCTCGGGGGAGGCCAGATGTACAGCCCACGGGAAATGAGGGTGAGTGGATCCTGAAGCTCCTCTCTGTCCAGTTCTCACAGGACAGAGGGGCATTTTCCCTAGTAATGTTGTGCCCACACAGGGTTCCCAGGGCTTTCTCTGTTTTCTGTACTCTGTCTCTCCTTTCAGGCAAATGGCAGCTGGCAAGAGGCTGTGACCCCCTCTTCAGTGACATCCCC
....................................................((((..........))))..((((((((.((....)).))))))))...................................................................................................................................
..................................................51..............................................99.................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040029(GSM532914)
G026T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040011(GSM532896)
G529T. (cervix)		TAX577744(Rovira)
total RNA. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR040018(GSM532903)
G701N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		TAX577580(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR040019(GSM532904)
G701T. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR191504(GSM715614)
124genomic small RNA (size selected RNA from . (breast)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532886(GSM532886)
G850T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
............................................................................GTCCAGTTCTCACAGGAAT......................................................................................................................................1912.000.004.00-2.00----------1.00---1.00--------1.00--------1.00-1.001.00---------
............................................................................GTCCAGTTCTCACAGGACT......................................................................................................................................193.000.002.00------1.00----------------------------------------
.......................................................................................ACAGGACAGAGGGGCATTTTCC........................................................................................................................2213.003.00-3.00----------------------------------------------
............................................................................GTCCAGTTCTCACAGGAATCC....................................................................................................................................213.000.002.00-1.00---------------------------------------------
..................................................GTGAGTGGATCCTGAAGC.................................................................................................................................................................1812.002.00--------1.00---1.00-----------------------------------
........................................................................................CAGGACAGAGGGGCATTTTCC........................................................................................................................2112.002.00-1.00-------------------------------1.00--------------
.................................GCCCACGGGAAATGAGG...................................................................................................................................................................................1722.002.00----1.00---0.50-------------------------------------0.50-
.....GATAACCTCGGGGGAAT...............................................................................................................................................................................................................171.000.00----------------------------------1.00-------------
.....................................................................................TCACAGGACAGAGGGGCGCAA...........................................................................................................................211.000.00------------------------------1.00-----------------
...........................................................................................................................................................TCTGTACTCTGTCTCTCCTTTCAG..................................................2411.001.00----1.00-------------------------------------------
....................................................................................CTCACAGGACAGAGGGGCATTTTCCC.......................................................................................................................2611.001.00-1.00----------------------------------------------
.......................................................................................ACAGGACAGAGGGGCATTTTC.........................................................................................................................2111.001.00-1.00----------------------------------------------
........................................................................................................................................................................TCTCCTTTCAGGCAAATGGCAG.......................................2211.001.00-----------------------------1.00------------------
.......................................................................................ACAGGACAGAGGGGCATTTT..........................................................................................................................2011.001.00------------------------------------1.00-----------
.............................................................................TCCAGTTCTCACAGGAATCC....................................................................................................................................201.000.001.00-----------------------------------------------
............................................................................GTCCAGTTCTCACAGGAGTC.....................................................................................................................................201.000.001.00-----------------------------------------------
............................................................................GTCCAGTTCTCACAGGTAT......................................................................................................................................191.000.00-----1.00------------------------------------------
............................................................................GTCCAGTTCTCACAGGAATC.....................................................................................................................................201.000.00---1.00--------------------------------------------
................................AGCCCACGGGAAATGAGG...................................................................................................................................................................................1821.001.00--------------------------------------------0.50--0.50
....................................................................................CTCACAGGACAGAGGGGCATTT...........................................................................................................................2211.001.00---------------------1.00--------------------------
..............................................................................................................................ACACAGGGTTCCCAGGCA.....................................................................................181.000.00----------------1.00-------------------------------
............................................................................GTCCAGTTCTCACAGGATTAC....................................................................................................................................211.000.00---1.00--------------------------------------------
............................................................................GTCCAGTTCTCACAGTAGT......................................................................................................................................191.000.00-----1.00------------------------------------------
.................................GCCCACGGGAAATGAGGGTG................................................................................................................................................................................2011.001.00--------------1.00---------------------------------
........................................................................................................................................................TTTTCTGTACTCTGTCTCTCCTTT.....................................................2411.001.00-----------1.00------------------------------------
........................................................................................CAGGACAGAGGGGCATTTTCCCA......................................................................................................................231.000.00-1.00----------------------------------------------
........................................................................................CAGGACAGAGGGGCATTTT..........................................................................................................................1911.001.00-------------------1.00----------------------------
............................................................................GTCCAGTTCTCACAGCACT......................................................................................................................................191.000.00------------------------1.00-----------------------
............................................................................GTCCAGTTCTCACAGGTATC.....................................................................................................................................201.000.001.00-----------------------------------------------
............................................................................GTCCAGTTCTCACAGGAGTCC....................................................................................................................................211.000.00--1.00---------------------------------------------
......................................................................................CACAGGACAGAGGGGCAT.............................................................................................................................1811.001.00------1.00-----------------------------------------
............................................................................GTCCAGTTCTCACAGAAAC......................................................................................................................................191.000.00---------------------------------------1.00--------
............................................................................GTCCAGTTCTCACAGGAAGC.....................................................................................................................................201.000.00---1.00--------------------------------------------
............................................................................GTCCAGTTCTCACAGGATT......................................................................................................................................191.000.001.00-----------------------------------------------
........................................................................................CAGGACAGAGGGGCATTTTC.........................................................................................................................2011.001.00--------------------1.00---------------------------
.....................................ACGGGAAATGAGGGTGAGTGG...........................................................................................................................................................................2111.001.00-1.00----------------------------------------------
............................................................................GTCCAGTTCTCACAGGACTCCC...................................................................................................................................221.000.00---------------1.00--------------------------------
......................................................................................................................................................................................AATGGCAGCTGGCAAGAGGC...........................2020.500.50----------0.50-------------------------------------
..................................CCCACGGGAAATGAGG...................................................................................................................................................................................1620.500.50-------------------------------------------0.50----
..................................................................................................................................................................................................................CCTCTTCAGTGACATCCC.1820.500.50----------0.50-------------------------------------
...............................CAGCCCACGGGAAATGAGG...................................................................................................................................................................................1920.500.50------------------------------------------0.50-----
...............................................................................................................................................................................................TGGCAAGAGGCTGTGACCCC..................2020.500.50-----------------------------------------0.50------
................................................................................................................................................................................................GGCAAGAGGCTGTGACCCCC.................2020.500.50---------------------------------------------0.50--
............TCGGGGGAGGCCAGATGTACAGCCCACGGG...........................................................................................................................................................................................3020.500.50---------0.50--------------------------------------
............TCGGGGGAGGCCAGATGTACAGCCCACGG............................................................................................................................................................................................2920.500.50----0.50-------------------------------------------
............TCGGGGGAGGCCAGATGT.......................................................................................................................................................................................................1820.500.50-------0.50----------------------------------------

Antisense strand
ATGGGGATAACCTCGGGGGAGGCCAGATGTACAGCCCACGGGAAATGAGGGTGAGTGGATCCTGAAGCTCCTCTCTGTCCAGTTCTCACAGGACAGAGGGGCATTTTCCCTAGTAATGTTGTGCCCACACAGGGTTCCCAGGGCTTTCTCTGTTTTCTGTACTCTGTCTCTCCTTTCAGGCAAATGGCAGCTGGCAAGAGGCTGTGACCCCCTCTTCAGTGACATCCCC
....................................................((((..........))))..((((((((.((....)).))))))))...................................................................................................................................
..................................................51..............................................99.................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040029(GSM532914)
G026T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040011(GSM532896)
G529T. (cervix)		TAX577744(Rovira)
total RNA. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR040018(GSM532903)
G701N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		TAX577580(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR040019(GSM532904)
G701T. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR191504(GSM715614)
124genomic small RNA (size selected RNA from . (breast)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532886(GSM532886)
G850T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
.........................................GGATCCACTCACCCTCATTTC....................................................................................................................................................................... 2111.001.00---------------------------1.00--------------------
....................................................................TCCTCTCTGTCCAGTTCAA.............................................................................................................................................. 191.000.00-----------------------1.00------------------------
...GGGATAACCTCGGGGATC................................................................................................................................................................................................................ 181.000.00----------------------------1.00-------------------
.................................................................AGCTCCTCTCTGTCCAGTTC................................................................................................................................................ 201.000.00-------------------------1.00----------------------
.......................CAGATGTACAGCCCATCA............................................................................................................................................................................................ 181.000.00----------------------1.00-------------------------
...............................................................GAGAACTGGACAGAGAGGAGCTTC.............................................................................................................................................. 2411.001.00--------------------------------1.00---------------
...............................................................CCTGTGAGAACTGGACAGAGAGGAGCTTC......................................................................................................................................... 2911.001.00------------------1.00-----------------------------
..................................................................TGTGAGAACTGGACAGAGAGGAGC........................................................................................................................................... 2411.001.00-------------------------------1.00----------------
...................................................................GTGAGAACTGGACAGAGAGGAG............................................................................................................................................ 2211.001.00------1.00-----------------------------------------
.............................................................................................................................................................TGTACTCTGTCTCTCCTTTA.................................................... 201.000.00---1.00--------------------------------------------
...........................................................AACTGGACAGAGAGGAGCTTCAGGA................................................................................................................................................. 2511.001.00---------1.00--------------------------------------