ID: uc003nzu.2_intron_4_0_chr6_32119953_r.3p
GENE: (1)
chr6:32119903-32120152-


(1)
BRAIN
(1)
BREAST
(5)
CELL-LINE
(1)
CERVIX
(4)
HEART
(1)
HELA
(1)
LIVER
(1)
OTHER
(11)
SKIN
(1)
XRN.ip

Sense strand
CTAAAGAGGAGGAAACTGGGGCCAAGGATTTGGGAGAAGACCCTGGCACCTTGCAGGGAGCTAAGAGGGGGAGACGACCTGCCTCTGGAGGCACCTGGGTTATTAACTCCACTGAGAACCTGTTCACTTCCTCCCACAATACAATCACTGAGTCTTGGTGGGGGAGACTCCAGAGAGTTCTCCTTCCTTCCTTTCCTTAGTCCCACCCGCCTCGCCTGGTCTAGCCTCCGTGTTTCCATGACAACTCCAA
..................................................................((((((((......((((((((((......(((((.(((.......))).))))).....((((((((((..((.((.....)).))..))).))))))).)))))))).))))))))))................................................................
..................................................................67...........................................................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040016(GSM532901)
G645N. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
TAX577453(Rovira)
total RNA. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR029125(GSM416754)
U2OS. (cell line)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................................................................................................................CAGAGAGTTCTCCTTTTG..............................................................1819.000.0016.002.00------1.00--------------------
.........................................................................................................................................................................CCAGAGAGTTCTCCTTTTG..............................................................199.000.009.00----------------------------
.......................................................................AGACGACCTGCCTCTGG..................................................................................................................................................................1715.005.00-----1.00---1.001.00--1.00------1.00--------
.........................................................................................................................................................................CCAGAGAGTTCTCCTTATG..............................................................194.000.004.00----------------------------
.........................................................................................................................................................................CCAGAGAGTTCTCCTTATGG.............................................................202.000.002.00----------------------------
.......................................................................AGACGACCTGCCTCTGGG.................................................................................................................................................................1812.005.00-----1.00---------1.00-------------
.........................................................................................................................................................................CCAGAGAGTTCTCCTTATAG.............................................................202.000.002.00----------------------------
.........................................................................................................................................................................CCAGAGAGTTCTCCTTCTG..............................................................191.000.001.00----------------------------
.......................................................................................................................................................GTCTTGGTGGGGGAGTGG.................................................................................181.000.00----------------------1.00------
..........................................................................................................................................................................CAGAGAGTTCTCCTTTCT..............................................................181.000.00-1.00---------------------------
.......................................................................AGACGACCTGCCTCTGGGT................................................................................................................................................................1911.005.00-------1.00---------------------
..............ACTGGGGCCAAGGATTTGGG........................................................................................................................................................................................................................2011.001.00------------------1.00----------
.........................................................................................................................................................................CCAGAGAGTTCTCCTTTTA..............................................................191.000.001.00----------------------------
..........................................................................................................................................................................CAGAGAGTTCTCCTTTTC..............................................................181.000.001.00----------------------------
.........................................................................................................................................................................CCAGAGAGTTCTCCTTTAG..............................................................191.000.00-1.00---------------------------
........................................................................GACGACCTGCCTCTGG..................................................................................................................................................................1621.001.00--------------------------0.500.50-
.............................................................................................................................................................................................................CCCGCCTCGCCTGGTAGG...........................181.000.00-----------1.00-----------------
.........................................................................................................................................................................CCAGAGAGTTCTCCTTATC..............................................................191.000.001.00----------------------------

Antisense strand
CTAAAGAGGAGGAAACTGGGGCCAAGGATTTGGGAGAAGACCCTGGCACCTTGCAGGGAGCTAAGAGGGGGAGACGACCTGCCTCTGGAGGCACCTGGGTTATTAACTCCACTGAGAACCTGTTCACTTCCTCCCACAATACAATCACTGAGTCTTGGTGGGGGAGACTCCAGAGAGTTCTCCTTCCTTCCTTTCCTTAGTCCCACCCGCCTCGCCTGGTCTAGCCTCCGTGTTTCCATGACAACTCCAA
..................................................................((((((((......((((((((((......(((((.(((.......))).))))).....((((((((((..((.((.....)).))..))).))))))).)))))))).))))))))))................................................................
..................................................................67...........................................................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040016(GSM532901)
G645N. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
TAX577453(Rovira)
total RNA. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR029125(GSM416754)
U2OS. (cell line)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................................................................................AGAGTTCTCCTTCCTTCG........................................................... 188.000.00--4.00---1.00-------1.00------1.00-1.00-----
......................................................................................................................................................................................CTTCCTTCCTTTCCTCATC................................................. 193.000.00---3.00-------------------------
.............................................................................................................................................................................AGAGTTCTCCTTCCTTCCG.......................................................... 192.000.00------1.00---------1.00------------
.............................................................................................................................................................................AGAGTTCTCCTTCCTTCCTTTG....................................................... 221.000.00-----------------1.00-----------
................................................................................................................................................................................................TTCCTTAGTCCCACCGCAC....................................... 191.000.00-------------------1.00---------
.......................................................................CAGGTGCCTCCAGAGGCAGGTCGTCT......................................................................................................................................................... 2611.001.00------------------------1.00----
.......................................ACCCTGGCACCTTGCATGCT............................................................................................................................................................................................... 201.000.00------------1.00----------------
......................................................................................................................TGTGGGAGGAAGTGAACAGG................................................................................................................ 2011.001.00----1.00------------------------
..............................................................................................................................CAGTGATTGTATTGTGGGAGGAAG.................................................................................................... 2411.001.00----1.00------------------------
.......................................................................................................................TGTGGGAGGAAGTGAACAG................................................................................................................ 1911.001.00----1.00------------------------
.............................................................................................................................................ACCAAGACTCAGTGATTG........................................................................................... 1830.670.67-------------------------0.67---
............................................................................................................................................CAAGACTCAGTGATTGT............................................................................................. 1770.140.14----------------------------0.14