ID: uc003nxv.1_intron_5_0_chr6_31851217_r
GENE: (2)
chr6:31851167-31851632-


(2)
AGO2.ip
(3)
B-CELL
(4)
BRAIN
(2)
BREAST
(10)
CELL-LINE
(3)
CERVIX
(1)
HEART
(1)
HELA
(1)
LIVER
(3)
OTHER
(9)
SKIN
(1)
XRN.ip

Sense strand
ACTGCGAGACGTCCACCATGAACATCGATCGCAACATCACCCACCTGCAGGTGAGTAGGGGGCCCGGGGCCTCCCCAAAAGGACACCGAGAGCTGCCAAGTACAGTTGGACAAGCTTCAAACCAGCAAAGGCACCTGGCCAAGGAAGGGTTGGCTGAAAGGGAGCCCTGGTGTGGGGTCGCATCCCCACCAGGGGAGGGATCCTTTTCCTAGGTCACAGCAAGGTATCATATGAGCTCCCAGTAGCCCTGGGGACACCACCATACTGATTACCCGTCACCCTAGGACCATCACCACCCACTGTTGTAACACATGGACCCCAAAGAAAGGACAGTGGTTAGGGGGTCAGGGGGCATCAAGAGTAGAGGGGCCCAGACCGATCATGGGGTTGAGCTGACCTCTGCCTCCTCGCCCCAGCACTGCACGTGTGTGGACGACTGCTCTAGCTCCAACTGCCTGTGCGGCCA
...............................................................................................................................................................................................................................((((((((((...((((((.....)))))).......)))).)))).))..(((.......))).........(((.(((......)))))).......................................................................................................................................................
...............................................................................................................................................................................................................................224............................................................................................319.................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR343335SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040016(GSM532901)
G645N. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040031(GSM532916)
G013T. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR029128(GSM416757)
H520. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................................................................................................................................................................................................................................................CCACTGTTGTAACACGAGC.......................................................................................................................................................1926.000.0021.00--3.00----------------------1.00-------1.00------
........................................................................................................................................................................................................................................................................................................CCACTGTTGTAACACGA.........................................................................................................................................................1713.000.0013.00----------------------------------------
........................................................................................................................................................................................................................................................................................................CCACTGTTGTAACACGATC.......................................................................................................................................................194.000.00-4.00---------------------------------------
........................................................................................................................................................................................................................................................................................................CCACTGTTGTAACACGAG........................................................................................................................................................184.000.003.00--1.00-------------------------------------
.................................ACATCACCCACCTGCACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................193.000.00-----2.00---1.00-------------------------------
....................................................................................................................................................................................................................................ATATGAGCTCCCAGTAGCC...........................................................................................................................................................................................................................1912.002.00----2.00------------------------------------
................................................................................................................................................................................................................................................AGTAGCCCTGGGGACACTTTA.............................................................................................................................................................................................................211.000.00--1.00--------------------------------------
................................................................................................................................................................................................................................................................................................................................AAAGAAAGGACAGTGGAGGA..............................................................................................................................201.000.00-------------------------1.00---------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTGTGGACGACTGCTC........................1911.001.00------------------1.00----------------------
...........................................................................CAAAAGGACACCGAGAGCTGC..................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-----------------1.00-----------------------
............................................................................................................................GCAAAGGCACCTGGCTGTG...................................................................................................................................................................................................................................................................................................................................191.000.00--1.00--------------------------------------
......................................................................................................................................................................................................................................................................................................................................AGGACAGTGGTTAGGGGGTCAGGGGGCAC...............................................................................................................291.000.00--1.00--------------------------------------
................CATGAACATCGATCGCAACATCACCC........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00----------------------------1.00------------
...GCGAGACGTCCACCATGAACATCGATCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00----------1.00------------------------------
.....................................................AGTAGGGGGCCCGGGGGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................201.000.00--1.00--------------------------------------
............................................................GGCCCGGGGCCTCCCACGG...................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-------------1.00---------------------------
...............................................................................................................................................................................................................................................................................................CATCACCACCCACTGTTTACA..............................................................................................................................................................211.000.00---------------------------------1.00-------
......AGACGTCCACCATGAACATCGATCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00---------------------------1.00-------------
..TGCGAGACGTCCACCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-------------------------------1.00---------
..............................................................................................................................................................................................................................................................................................................................CCAAAGAAAGGACAGTGGTT................................................................................................................................2011.001.00------1.00----------------------------------
..................................................................................................................................................................................................................................TCATATGAGCTCCCAGTAGCC...........................................................................................................................................................................................................................2111.001.00--------------------1.00--------------------
.............CACCATGAACATCGATCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-------1.00---------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CACGTGTGTGGACGACTG...........................1811.001.00------------------------------1.00----------
...............................................................................................................................AAGGCACCTGGCCAAGGACTC..............................................................................................................................................................................................................................................................................................................................211.000.00-----------1.00-----------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACTGCTCTAGCTCCAAC..............2111.001.00-------------------1.00---------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACGACTGCT.........................1520.500.50--------------------------------------0.50--
....................................................................................................................TCAAACCAGCAAAGGC..............................................................................................................................................................................................................................................................................................................................................1640.250.25-------0.25---------------------------------
......................................................................................................................................................................................................................................................................................................................................AGGACAGTGGTTAGGG............................................................................................................................1660.170.17---------------------------------------0.17-
...........................................................................................................................................................................................ACCAGGGGAGGGATC........................................................................................................................................................................................................................................................................1570.140.14----------------------------------------0.14

Antisense strand
ACTGCGAGACGTCCACCATGAACATCGATCGCAACATCACCCACCTGCAGGTGAGTAGGGGGCCCGGGGCCTCCCCAAAAGGACACCGAGAGCTGCCAAGTACAGTTGGACAAGCTTCAAACCAGCAAAGGCACCTGGCCAAGGAAGGGTTGGCTGAAAGGGAGCCCTGGTGTGGGGTCGCATCCCCACCAGGGGAGGGATCCTTTTCCTAGGTCACAGCAAGGTATCATATGAGCTCCCAGTAGCCCTGGGGACACCACCATACTGATTACCCGTCACCCTAGGACCATCACCACCCACTGTTGTAACACATGGACCCCAAAGAAAGGACAGTGGTTAGGGGGTCAGGGGGCATCAAGAGTAGAGGGGCCCAGACCGATCATGGGGTTGAGCTGACCTCTGCCTCCTCGCCCCAGCACTGCACGTGTGTGGACGACTGCTCTAGCTCCAACTGCCTGTGCGGCCA
...............................................................................................................................................................................................................................((((((((((...((((((.....)))))).......)))).)))).))..(((.......))).........(((.(((......)))))).......................................................................................................................................................
...............................................................................................................................................................................................................................224............................................................................................319.................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR343335SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040016(GSM532901)
G645N. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040031(GSM532916)
G013T. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR029128(GSM416757)
H520. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................................................................................................................................................................................................................CTGATTACCCGTCACCGGTT...................................................................................................................................................................................... 202.000.00--------1.00----------------------------1.00---
.....................................................AGTAGGGGGCCCGGGTGGG.......................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00----------------1.00------------------------
..................................................................................................................................................................................CGCATCCCCACCAGGTA............................................................................................................................................................................................................................................................................... 171.000.00----------------------1.00------------------
...................................................................GGCCTCCCCAAAAGGAGGC............................................................................................................................................................................................................................................................................................................................................................................................ 191.000.00-----------------------------1.00-----------
........................................................................................................................................................................................................................................................................CTGATTACCCGTCACCGG........................................................................................................................................................................................ 181.000.00--------------1.00--------------------------
...............................................................................................................................................................................................................................................................................................................................................GTTAGGGGGTCAGGGGTGCC............................................................................................................... 201.000.00------------1.00----------------------------
.....................................................................................................ACAGTTGGACAAGCTTCGG.......................................................................................................................................................................................................................................................................................................................................................... 191.000.00---------------------1.00-------------------
..........................................................GGGGCCCGGGGCCTCCCGCCG................................................................................................................................................................................................................................................................................................................................................................................................... 211.000.00-----------------------------------1.00-----
........................................................................................................................................................................................................................................................................CTGATTACCCGTCACCCG........................................................................................................................................................................................ 181.000.00---------------1.00-------------------------
...............................................................................................................................................................................................................................................................................................................................................GTTAGGGGGTCAGGGGTTGT............................................................................................................... 201.000.00------------------------1.00----------------
.....................................................................................................................................................................................................................................................................................................................................................................AGAGTAGAGGGGCCCAGACCGATCATGGG................................................................................ 291.000.00-----------------------1.00-----------------
........................................................................................................................................................................................................................................................................CTGATTACCCGTCACCCGG....................................................................................................................................................................................... 191.000.00------------------------------------1.00----
.CTGCGAGACGTCCACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 171.000.00--------------------------------1.00--------
...........................................................................................................GGTTTGAAGCTTGTCC....................................................................................................................................................................................................................................................................................................................................................... 1620.500.50------0.50----------------------------------