ID: uc003nxe.2_intron_9_0_chr6_31749384_r
GENE: (20)
chr6:31749334-31749517-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(1)
AGO3.ip 		(8)
B-CELL 		(5)
BRAIN 		(4)
BREAST 		(28)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(3)
HELA 		(7)
LIVER 		(2)
OTHER 		(10)
SKIN 		(2)
XRN.ip

Sense strand
GGTTCTCCTCTGGCCTCTTCCCCTTATCCATTTTGGGCTGGCCCAACCAGGTGTGTTCCTGGGGCCGGGGCTTGGCGGGACAGGGGACTGGAGGGTGGGTGTTGGCTCCCCTTCACACCCTGGTCTGCCCTCAGTCAGAAGACCTGAGTGTGTTCTACCCCGGGACACTGCTGGAGACCGGTCA
...................................................................(((...(((((..(((((...(((((((.((((....)))))))))))..)))))..))))))))....................................................
...................................................................68................................................................134................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR038857(GSM458540)
D20. (cell line)		SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR343335GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................TGGCGGGACAGGGGACTGGAG...........................................................................................21127.0027.003.006.003.003.00---1.00----1.00--1.00---1.00---2.00-----1.001.00-----------1.00---------1.00-1.00--------------1.00---
........................................................................TGGCGGGACAGGGGACTGGA............................................................................................20111.0011.004.00----------1.00-----1.00--1.00-------1.00------------1.00-------1.00--------------1.00--------
........................................................................TGGCGGGACAGGGGACTGGAGA..........................................................................................2217.0027.00-------------1.00-1.002.00--1.00-----------------------1.00-----------------------1.00-----
........................................................................TGGCGGGACAGGGGACTGGAGG..........................................................................................2217.007.001.00----1.00-------1.00-------------1.00---------1.00-----------------------1.00------1.00----
........................................................................TGGCGGGACAGGGGACTGGAGT..........................................................................................2216.0027.00----------------------1.00-2.00-------1.00--------------------------1.00------1.00------
........................................................................TGGCGGGACAGGGGACTGGAGGG.........................................................................................2315.005.002.00----1.00-----1.00------------------------------------1.00------------------------
........................................................................TGGCGGGACAGGGGACTGGAA...........................................................................................2115.0011.001.00----1.00--2.00---------------------------1.00------------------------------------
........................................................................TGGCGGGACAGGGGACTGG.............................................................................................1915.005.00--1.00---------------1.00---1.00----------------------------1.00----------1.00----------
.......................................................................TTGGCGGGACAGGGGACTGGAG...........................................................................................2214.004.002.00--------1.00-------1.00-------------------------------------------------------
................................................................................................................................................................CGGGACACTGCTGGAGACCGG...2113.003.00----1.00---------1.00----------1.00-----------------------------------------------
......................................................................................................................................................................ACTGCTGGAGACCGGTCA1812.002.00-----1.001.00------------------------------------------------------------------
................................................................................................................................................................CGGGACACTGCTGGAGACCG....2012.002.00----------------------------------------------1.00------------------1.00-------
................................................................................................................................................................CGGGACACTGCTGGAGACCGGTCA2412.002.00----1.00-1.00------------------------------------------------------------------
......................................................................CTTGGCGGGACAGGGGACTGT.............................................................................................212.000.002.00------------------------------------------------------------------------
................................................................................................................................................................CGGGACACTGCTGGAGACC.....1912.002.00----2.00--------------------------------------------------------------------
.......................................................................TTGGCGGGACAGGGGACTGGAGT..........................................................................................2312.004.00-------1.00------------1.00----------------------------------------------------
.................................................................................................................................................................GGGACACTGCTGGAGAC......1721.501.50--------------------------0.50---------------------------------1.00------------
.....................................................................................................................................................................CACTGCTGGAGACCG....1511.001.00---------------------------------------1.00---------------------------------
.................................................................................................................................................................GGGACACTGCTGGAGACCGGTCA2311.001.00-------------------------1.00-----------------------------------------------
................................................................................................................................................................CGGGACACTGCTGGAGACCGGT..2211.001.00---------------------------------------------1.00---------------------------
........................................................................TGGCGGGACAGGGGACTGA.............................................................................................191.000.00---1.00---------------------------------------------------------------------
........................................................................TGGCGGGACAGGGGACTGGAGGGAC.......................................................................................2511.005.00----------1.00--------------------------------------------------------------
.................................................................................................................................................................GGGACACTGCTGGAGACC.....1811.001.00------1.00------------------------------------------------------------------
..TTCTCCTCTGGCCTCCCCT...................................................................................................................................................................191.000.00--------------------------------------------------1.00----------------------
...............................................................................................................................................................CCGGGACACTGCTGGAGA.......1811.001.00----------------------------------------1.00--------------------------------
........................................................................TGGCGGGACAGGGGACTGGAAT..........................................................................................2211.0011.00-----------1.00-------------------------------------------------------------
...............................................................................................................TTCACACCCTGGTCTGCCCTCT...................................................221.000.00--1.00----------------------------------------------------------------------
.......................................................................TTGGCGGGACAGGGGACTGGAGGTC........................................................................................251.000.00----------1.00--------------------------------------------------------------
.................................................................................................................................................................GGGACACTGCTGGAGACCGG...2011.001.00-------1.00-----------------------------------------------------------------
........................................................................TGGCGGGACAGGGGACTGGGG...........................................................................................2111.005.00----------------------------------1.00--------------------------------------
..................................................................................................................................................AGTGTGTTCTACCCCGGGA...................1911.001.00---------------------------------------------------------------1.00---------
..................................GGGCTGGCCCAACCAGTCAG..................................................................................................................................201.000.00-------------------------------1.00-----------------------------------------
........................................................................TGGCGGGACAGGGGACTGTAA...........................................................................................211.000.00-----------------------------------1.00-------------------------------------
........................................................................TGGCGGGACAGGGGACTGGTAA..........................................................................................2211.005.00---------1.00---------------------------------------------------------------
........................................................................TGGCGGGACAGGGGACTGGAGGGAT.......................................................................................2511.005.00--------------------------------------------------------1.00----------------
........................................................................TGGCGGGACAGGGGACTGAA............................................................................................201.000.00--------1.00----------------------------------------------------------------
................................................................................................................................................................CGGGACACTGCTGGAGACCGGTC.2311.001.00---------------------1.00---------------------------------------------------
..TTCTCCTCTGGCCTCTTCCC..................................................................................................................................................................2011.001.00--------------1.00----------------------------------------------------------
..................................................GTGTGTTCCTGGGGCTGC....................................................................................................................181.000.00---------------------------------------------------------1.00---------------
...............................................................................................................................................................CCGGGACACTGCTGGAGACCGGTC.2411.001.00------1.00------------------------------------------------------------------
........................................................................TGGCGGGACAGGGGACTGGAAA..........................................................................................2211.0011.00---------1.00---------------------------------------------------------------
................................................................................................................................................................CGGGACACTGCTGGAGAAC.....191.000.00---------------------------------1.00---------------------------------------
..............................................................................................................................................................CCCGGGACACTGCTGGAGAC......2011.001.00--------------------------------------1.00----------------------------------
.......................................................................................................................................CAGAAGACCTGAGTGTGTT..............................1911.001.00-----------------------------------------------------1.00-------------------
........................................................................TGGCGGGACAGGGGAATGG.............................................................................................191.000.00------------------1.00------------------------------------------------------
..............................................................GGCCGGGGCTTGGCGGAA........................................................................................................181.000.00----------------------------------------------------------1.00--------------
.................................................................................................................................................................GGGACACTGCTGGAGACCG....1911.001.00-----------------------------------------------1.00-------------------------
........................................................................TGGCGGGACAGGGGACTGGAGGCTAA......................................................................................2611.007.00----------1.00--------------------------------------------------------------
........................................................................TGGCGGGACAGGGGACTGGAGGTAT.......................................................................................2511.007.00---------------------1.00---------------------------------------------------
........................................................................TGGCGGGACAGGGGACTTGAG...........................................................................................211.000.00------------1.00------------------------------------------------------------
................................................................................CAGGGGACTGGAGGGT........................................................................................1670.140.14------------0.14------------------------------------------------------------

Antisense strand
GGTTCTCCTCTGGCCTCTTCCCCTTATCCATTTTGGGCTGGCCCAACCAGGTGTGTTCCTGGGGCCGGGGCTTGGCGGGACAGGGGACTGGAGGGTGGGTGTTGGCTCCCCTTCACACCCTGGTCTGCCCTCAGTCAGAAGACCTGAGTGTGTTCTACCCCGGGACACTGCTGGAGACCGGTCA
...................................................................(((...(((((..(((((...(((((((.((((....)))))))))))..)))))..))))))))....................................................
...................................................................68................................................................134................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR038857(GSM458540)
D20. (cell line)		SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR343335GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
.GTTCTCCTCTGGCCTATG..................................................................................................................................................................... 181.000.00--------------------------------------------1.00----------------------------
.....................................................................................................................................................GTGTTCTACCCCGGGACACTGCTGGTG........ 271.000.00--------------------------1.00----------------------------------------------
............................................................................................................................CTGCCCTCAGTCAGAGAGC......................................... 191.000.00-------------------------------------------------------1.00-----------------
............GGATAAGGGGAAGAGGC........................................................................................................................................................... 1720.500.50-----------------------------------------------------------------------0.50-
............GATAAGGGGAAGAGGC............................................................................................................................................................ 1620.500.50----------------------------------------------------------------------0.50--
............TGGATAAGGGGAAGAGGC.......................................................................................................................................................... 1820.500.50------------------------------------------------------------------------0.50