ID: uc003nxe.2_intron_5_0_chr6_31748346_r
GENE: (24)
chr6:31748296-31748531-


(3)
AGO2.ip 		(1)
AGO3.ip 		(8)
B-CELL 		(1)
BRAIN 		(6)
BREAST 		(24)
CELL-LINE 		(4)
CERVIX 		(3)
HEART 		(1)
HELA 		(4)
LIVER 		(5)
OTHER 		(1)
RRP40.ip 		(12)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
ATGTGGCACCGATGCTCTCCGGTTTGGATTATGTGCCTACATGTCCCAGGGTATGGCCCCCAAAGCGTCCCTCCCAGCCACTCCTTCCTCCTTCTGTGAGGCCCATCCCTCTTCTCCACCCTGAGCCTCTGGTGGGCATGGGCTGGGAAGAGGGTGATGAGGACTCACATCTCACCCCCGACCCAGGTCGTGACATCAACCTGGATGTGAACCGGATACTGGGTTACCGCCACTTC
................................................................((..........))................((((((.(((((((((((((.((((((...((((.....))))..))).)))))))))))..))).)).))))))...................................................................
..............................................................63........................................................................................................169.................................................................
SizePerfect hitTotal NormPerfect NormGSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040011(GSM532896)
G529T. (cervix)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM532874(GSM532874)
G699T. (cervix)		SRR191452(GSM715562)
178genomic small RNA (size selected RNA from . (breast)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR040017(GSM532902)
G645T. (cervix)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038860(GSM458543)
MM426. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038862(GSM458545)
MM472. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
..............................................................................................................................................CTGGGAAGAGGGTGATGAGGACT.......................................................................2318.008.00---------1.00---1.001.00----------1.00-------1.00----1.00-1.00-----------1.00------------------
.............................................................................................................................................GCTGGGAAGAGGGTGATGAGGACT.......................................................................2418.008.00-1.001.00--1.00--------1.00------1.00-1.00-----1.00----------------------------1.00------------
...............................................................................................................................................TGGGAAGAGGGTGATGAGGACT.......................................................................2216.006.003.00-------------------------------------------1.00------------1.00------1.00------
.............................................................................................................................................GCTGGGAAGAGGGTGATGAGGAC........................................................................2314.004.00--2.00----------1.00------------------1.00--------------------------------------
..............................................................................................................................................CTGGGAAGAGGGTGATGAG...........................................................................1913.003.00--1.00----2.00---------------------------------------------------------------
.............................................................................................................................................GCTGGGAAGAGGGTGATGAGG..........................................................................2113.003.00-----------1.00----------------1.00------------------------1.00-----------------
...............................................................................................................................................................AGGACTCACATCTCACCCCCGAAGAT...................................................263.000.00----3.00------------------------------------------------------------------
..............................................................................................................................................CTGGGAAGAGGGTGATGAGGACTC......................................................................2413.003.003.00----------------------------------------------------------------------
..............................................................................................................................................CTGGGAAGAGGGTGATGAGG..........................................................................2013.003.00-----------1.00------------1.00-----------------------------------------1.00----
...............................................................................................................................................TGGGAAGAGGGTGATGAGGACTCT.....................................................................243.000.003.00----------------------------------------------------------------------
.................................TGCCTACATGTCCCAGG..........................................................................................................................................................................................1712.002.00----1.00----------1.00-------------------------------------------------------
.............................................................................................................................................GCTGGGAAGAGGGTGATGAGGA.........................................................................2212.002.00-----1.00-----------------------------1.00-----------------------------------
..................................................................................................................................GGTGGGCATGGGCTGGTGTG......................................................................................202.000.00---2.00-------------------------------------------------------------------
........................................................................................................................................CATGGGCTGGGAAGAGGGTGAT..............................................................................2212.002.00------------2.00----------------------------------------------------------
..................................................................................................................................................................................................................ACCGGATACTGGGTTACCGC......2012.002.00-2.00---------------------------------------------------------------------
......................................................................................................................................................................................................ACCTGGATGTGAACCGGAT...................1912.002.00-2.00---------------------------------------------------------------------
..............................................................................................................................................CTGGGAAGAGGGTGATGAGGACTCA.....................................................................2512.002.002.00----------------------------------------------------------------------
..................................................................................................................................................................................................ATCAACCTGGATGTGAACCGGAT...................2312.002.00-2.00---------------------------------------------------------------------
..............................................................................................................................................CTGGGAAGAGGGTGATGAGGAC........................................................................2212.002.00-----------------1.00--------1.00--------------------------------------------
..GTGGCACCGATGCTCTCCGG......................................................................................................................................................................................................................2011.001.00----------------------------------1.00------------------------------------
........................................................................................................................................................................ATCTCACCCCCGACCCATTT................................................201.000.00-------------------------------1.00---------------------------------------
.............................................................................................................................................GCTGGGAAGAGGGTGATGAG...........................................................................2011.001.00--1.00--------------------------------------------------------------------
...................................................................TCCCTCCCAGCCACTGTAT......................................................................................................................................................191.000.00------------------------------------1.00----------------------------------
.................................................................................................................................................................................................................AACCGGATACTGGGTGTGC........191.000.00---1.00-------------------------------------------------------------------
........................................................................................................................................................................................................CTGGATGTGAACCGGATACTGGGT............2411.001.00-1.00---------------------------------------------------------------------
...............................................................................................................................................TGGGAAGAGGGTGATGAG...........................................................................1821.001.00---------------------------------------------------------------------0.500.50
...................................................................................................................................GTGGGCATGGGCTGGGAAGAGGGCG................................................................................251.000.00---1.00-------------------------------------------------------------------
..............................................................................................................................................CTGGGAAGAGGGTGATGAGGACA.......................................................................2311.002.00--------------------1.00--------------------------------------------------
..............................................................................................................................................................................................................GTGAACCGGATACTGGGTTA..........2011.001.00---------------------------------------1.00-------------------------------
............................................................................................................................................GGCTGGGAAGAGGGTGATGAGGAC........................................................................2411.001.00--1.00--------------------------------------------------------------------
...TGGCACCGATGCTCTGGA.......................................................................................................................................................................................................................181.000.00---------1.00-------------------------------------------------------------
.......................................................................................................................................GCATGGGCTGGGAAGAGGGTGACG.............................................................................241.000.00--------------------------------------------------1.00--------------------
...............................................................................................................................................................................................................TGAACCGGATACTGGGTTA..........1911.001.00------------------------------------------------------1.00----------------
...................................................................................................................CCACCCTGAGCCTCTGGTGGGCATGGG..............................................................................................2711.001.00-------------------------------------------------------------------1.00---
.............................................................................................................................................GCTGGGAAGAGGGTGGAAC............................................................................191.000.00------------------------------------------1.00----------------------------
.................................................................................................................................................................................................................AACCGGATACTGGGTGGGC........191.000.00---1.00-------------------------------------------------------------------
..................................................................................................................................................................................................ATCAACCTGGATGTGAACCGGATA..................2411.001.00-1.00---------------------------------------------------------------------
.............................................................................................................................................GCTGGGAAGAGGGTGATGAGGAA........................................................................2311.002.00-----------------------------------------1.00-----------------------------
.............................................................................................................................................GCTGGGAAGAGGGTGATGA............................................................................1911.001.00---------------------------------------------1.00-------------------------
.........................................................................................................................TGAGCCTCTGGTGGGCATGGGCTGGGAG.......................................................................................281.000.00---------1.00-------------------------------------------------------------
.........................................................................................................................................................................TCTCACCCCCGACCCAG..................................................1711.001.00---------------------------------------------------------------1.00-------
..............................................................................................................................................CTGGGAAGAGGGTGATCAG...........................................................................191.000.00-------1.00---------------------------------------------------------------
...............................................................................ACTCCTTCCTCCTTCAAC...........................................................................................................................................181.000.00----------------1.00------------------------------------------------------
.......................................................................................................................................................................................................CCTGGATGTGAACCGGATACTG...............2211.001.00--------------------------------------------------------1.00--------------
...................................................................................................................................................................................................TCAACCTGGATGTGAGACC......................191.000.00--------1.00--------------------------------------------------------------
..........................................................................................................................................TGGGCTGGGAAGAGGGTGATGAGG..........................................................................2411.001.00---------------------------------------------------1.00-------------------
................................................................................................................................................................................................................GAACCGGATACTGGGTTACCGCCACTTA281.000.00---------------------------1.00-------------------------------------------
.............................................................................................................................................GCTGGGAAGAGGGTGATGAGGACTCA.....................................................................2611.001.00------------------------------------------------1.00----------------------
..............................................................................................................................................CTGGGAAGAGGGTGATGCG...........................................................................191.000.00--------------------------------------------------------------------1.00--
................................................................................................................................................................................................................GAACCGGATACTGGGTTA..........1811.001.00-------------------------------------------------------1.00---------------
.............................................................................................................................................GCTGGGAAGAGGGTGATGAGGACTC......................................................................2511.001.00-----------------------------------------------------------1.00-----------
...................CGGTTTGGATTATGTGCCTACA...................................................................................................................................................................................................2211.001.00-----1.00-----------------------------------------------------------------
...................................CCTACATGTCCCAGG..........................................................................................................................................................................................1590.110.11---------------0.11-------------------------------------------------------

Antisense strand
ATGTGGCACCGATGCTCTCCGGTTTGGATTATGTGCCTACATGTCCCAGGGTATGGCCCCCAAAGCGTCCCTCCCAGCCACTCCTTCCTCCTTCTGTGAGGCCCATCCCTCTTCTCCACCCTGAGCCTCTGGTGGGCATGGGCTGGGAAGAGGGTGATGAGGACTCACATCTCACCCCCGACCCAGGTCGTGACATCAACCTGGATGTGAACCGGATACTGGGTTACCGCCACTTC
................................................................((..........))................((((((.(((((((((((((.((((((...((((.....))))..))).)))))))))))..))).)).))))))...................................................................
..............................................................63........................................................................................................169.................................................................
SizePerfect hitTotal NormPerfect NormGSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040011(GSM532896)
G529T. (cervix)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM532874(GSM532874)
G699T. (cervix)		SRR191452(GSM715562)
178genomic small RNA (size selected RNA from . (breast)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR040017(GSM532902)
G645T. (cervix)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038860(GSM458543)
MM426. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038862(GSM458545)
MM472. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
................................................................................................................................................................................ACGACCTGGGTCGGG............................................. 1518.008.00----------2.00--------1.00-----------------1.00-----1.00---1.00-1.00----------1.00----------
......................................................................CTCCCAGCCACTCCTACAT................................................................................................................................................... 192.000.00------2.00----------------------------------------------------------------
................................GTGCCTACATGTCCCTG........................................................................................................................................................................................... 171.000.00-------------------------------------------------------------1.00---------
........................................................................................................................................TCTTCCCAGCCCATG..................................................................................... 1501.001.00----------------------------------------------1.00------------------------
......................................................................CTCCCAGCCACTCCTAAAT................................................................................................................................................... 191.000.00------1.00----------------------------------------------------------------
......................................................................CTCCCAGCCACTCCTAGT.................................................................................................................................................... 181.000.00-----------------------------------------------------------------1.00-----
...................................................................TCCCTCCCAGCCACTCCTGCCA................................................................................................................................................... 221.000.00--------1.00--------------------------------------------------------------
...............................................................................................................................................................................CCCCGACCCAGGTCGTTT........................................... 181.000.00--------1.00--------------------------------------------------------------
...................................................................TCCCTCCCAGCCACTCAT....................................................................................................................................................... 181.000.00--------------------------------------------------------------1.00--------
...............................................AGGGTATGGCCCCCAAACCAG........................................................................................................................................................................ 211.000.00------------------1.00----------------------------------------------------
....................................................................................................................CACCAGAGGCTCAGGGTG...................................................................................................... 1811.001.00----------------------1.00------------------------------------------------
..................................................................GTCCCTCCCAGCCACTCCA....................................................................................................................................................... 191.000.00------------------------------1.00----------------------------------------