ID: uc003nvf.3_intron_9_0_chr6_31609723_r
GENE: (15)
chr6:31609673-31609938-


(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(6)
B-CELL 		(2)
BRAIN 		(5)
BREAST 		(20)
CELL-LINE 		(5)
CERVIX 		(5)
HEART 		(7)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(12)
SKIN 		(1)
TESTES 		(1)
UTERUS

Sense strand
CCTCAGTGGATCCAGCAACATCTTTGAGCCTGGAGCTGATGGGGCCCTTGGTGAGCAAAAAGGATGCTTTGGCTTGCTCCAGGAAGGGGCAGCCAGAGGAATGTAGATGGCCTTGGTTTAGGGGTGTTGCCAAGGTGGGATGAGGTTGATGATCTGGTTGTGGGTGGGCAGGCCAGGTGGTAAAGGCCATTGCTAACATCTGCCCTTGTCCCCCAGGATTCTTTGGGGCCTTGCTTTCTCTTCTGTGCCAGAACTTCTCTATGGTG
................................................................................................................................................................((((.(((((((.((((((.....(((....)))..)))))).))).))))))))...................................................
...........................................................................................................................................................156.........................................................216................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189783SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM532874(GSM532874)
G699T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR040007(GSM532892)
G601T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029130(GSM416759)
DLD2. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM532879(GSM532879)
G659N. (cervix)		SRR038863(GSM458546)
MM603. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................................................................................................................ACATCTGCCCTTGTCCCCCAGT.................................................22119.004.00-3.003.00---3.00---1.00--------2.002.00-1.00-----------------------1.00----1.00--------1.00-1.00------
..............GCAACATCTTTGAGCCTG..........................................................................................................................................................................................................................................1819.009.009.00--------------------------------------------------------------------
.............AGCAACATCTTTGAGCC............................................................................................................................................................................................................................................1719.009.008.00-------------------------------------------------------1.00------------
..................................................................................................................................................................................................AACATCTGCCCTTGTCCCCCAGT.................................................235.000.00-4.00-----------------------------1.00-------------------------------------
...................................................................................................................................................................................................ACATCTGCCCTTGTCCCCCAGTA................................................2314.004.00--3.00----------------------1.00-------------------------------------------
...................................................................................................................................................................................................ACATCTGCCCTTGTCCCCCAG..................................................2114.004.00-2.00-------1.00-----------------1.00-----------------------------------------
..................................................................................................................................................................................................AACATCTGCCCTTGTCCCC.....................................................1913.003.00-3.00-------------------------------------------------------------------
................................................................................................................................................................TGGGTGGGCAGGCCAGGTGGTA....................................................................................2213.003.00--2.00--------------------------------------------------1.00---------------
...........................GCCTGGAGCTGATGGGGCCCTTGG.......................................................................................................................................................................................................................2412.002.00---------------2.00-----------------------------------------------------
...................................................................................................................................................................................................ACATCTGCCCTTGTCCCCCCGTT................................................232.000.00------------------------1.00----------------------1.00---------------------
.................................AGCTGATGGGGCCCTTGGATT....................................................................................................................................................................................................................212.000.00------------------2.00--------------------------------------------------
................................................................................................................................................................TGGGTGGGCAGGCCAGGTGGTATATC................................................................................2612.003.00----------------2.00----------------------------------------------------
............CAGCAACATCTTTGAGCCTGGAGC......................................................................................................................................................................................................................................2411.001.00------------------------------------------------1.00--------------------
................................................................................................................................................................TGGGTGGGCAGGCCAGGTGGTAAC..................................................................................241.000.00-------------1.00-------------------------------------------------------
.............AGCAACATCTTTGAGCCTGGAGCTGATG.................................................................................................................................................................................................................................2811.001.00---------1.00-----------------------------------------------------------
...................................................................................................................................................................................................ACATCTGCCCTTGTCCCCCCGT.................................................221.000.00--------------1.00------------------------------------------------------
......................................................................................................GTAGATGGCCTTGGTAGG..................................................................................................................................................181.000.00---------------------------------------1.00-----------------------------
...................................................................................................................................................................................................................................GCCTTGCTTTCTCTTCTGTGCCAGA..............2511.001.00----1.00----------------------------------------------------------------
....................................................................TTGGCTTGCTCCAGGCCC....................................................................................................................................................................................181.000.00--------------------------1.00------------------------------------------
...................................................................................................................................................................................................ACATCTGCCCTTGTCCCCCAAA.................................................221.000.00------------1.00--------------------------------------------------------
...............................................................................................GAGGAATGTAGATGGCCTTGGTTTAGG................................................................................................................................................2711.001.00-----------------1.00---------------------------------------------------
......................TTTGAGCCTGGAGCTGATGGGGCCCTT.........................................................................................................................................................................................................................2711.001.00--------------------------------------------------1.00------------------
..............................TGGAGCTGATGGGGCCCTTA........................................................................................................................................................................................................................201.000.00------------------------------------------1.00--------------------------
..........................AGCCTGGAGCTGATGGGGCCCCTGG.......................................................................................................................................................................................................................251.000.00-------------------------------------------1.00-------------------------
.....................CTTTGAGCCTGGAGCTGATGGGG..............................................................................................................................................................................................................................2311.001.00---------------------------------------------------------1.00-----------
................AACATCTTTGAGCCTGGAGCTGATGGGGCC............................................................................................................................................................................................................................3011.001.00---1.00-----------------------------------------------------------------
..............................TGGAGCTGATGGGGCCCT..........................................................................................................................................................................................................................1811.001.00----------------------------1.00----------------------------------------
..................................................................................................................................................................................................................................................CTGTGCCAGAACTTCTCTATG...2111.001.00-----------------------------------------------------------1.00---------
..............................................................................................AGAGGAATGTAGATGGCC..........................................................................................................................................................1811.001.00-----------------------1.00---------------------------------------------
.......................TTGAGCCTGGAGCTGATGG................................................................................................................................................................................................................................1911.001.00-----------1.00---------------------------------------------------------
.....GTGGATCCAGCAACATCTTTGAG..............................................................................................................................................................................................................................................2311.001.00--------1.00------------------------------------------------------------
................................................................................................................................................................TGGGTGGGCAGGCCAGGTGGTAATT.................................................................................251.000.00----------------------------------------------------------1.00----------
......................TTTGAGCCTGGAGCTGATGGGGCCCTTGG.......................................................................................................................................................................................................................2911.001.00---1.00-----------------------------------------------------------------
......................................................................................................................................................................................................TCTGCCCTTGTCCCCCAGATT...............................................211.000.00--1.00------------------------------------------------------------------
.............................................................................................................................................................................................................................................CTCTTCTGTGCCAGAACTTCTCT......2311.001.00----1.00----------------------------------------------------------------
.............AGCAACATCTTTGAGCCTGGA........................................................................................................................................................................................................................................2111.001.00-------------------------------------------------------------1.00-------
.........................................................................................................................................................................................................................ATTCTTTGGGGCCTTGCTTTC............................2111.001.00---------------------------------------------------------------1.00-----
.............................................................................................................................................................................................................................TTTGGGGCCTTGCTTTCTCTTCTGTG...................2611.001.00----1.00----------------------------------------------------------------
................................................................................................................................................................TGGGTGGGCAGGCCAGGTG.......................................................................................1911.001.00--------------------------------------1.00------------------------------
......................TTTGAGCCTGGAGCTGATGGGGC.............................................................................................................................................................................................................................2311.001.00-----------------------------1.00---------------------------------------
..............................................................................................................................................................TGTGGGTGGGCAGGCCAGGTGGTAA...................................................................................2511.001.00-------------------------------------1.00-------------------------------
...................................................................................................................................................................................................ACATCTGCCCTTGTCCCCCAGA.................................................2211.004.00--1.00------------------------------------------------------------------
...............................................................................................................................................................GTGGGTGGGCAGGCCAGGTGGTAA...................................................................................2411.001.00-------------------------------------------------1.00-------------------
......TGGATCCAGCAACATCTTTGAGCCTGGAGC......................................................................................................................................................................................................................................3011.001.00------------------------------1.00--------------------------------------
.........................................................................................................................................................................................................................................CTTTCTCTTCTGTGCCAGAACTTCTCTAT....2911.001.00-1.00-------------------------------------------------------------------
.............................................................................................................................................................TTGTGGGTGGGCAGGGGT...........................................................................................181.000.00-------1.00-------------------------------------------------------------
........................TGAGCCTGGAGCTGATGGGGCCCCTGG.......................................................................................................................................................................................................................271.000.00---------------------1.00-----------------------------------------------
...................................................................................................................................................................................................ACATCTGCCCTTGTCCCCCACT.................................................221.000.00----------1.00----------------------------------------------------------
..................................................................................................................................................................................................AACATCTGCCCTTGTCCCCCAGA.................................................231.000.00-1.00-------------------------------------------------------------------
...............................................................................................................................................................GTGGGTGGGCAGGCCAGGTGGGTA...................................................................................241.000.00-----1.00---------------------------------------------------------------
........................................................................................................................................................................................................................................GCTTTCTCTTCTGTGCCAGAA.............2111.001.00------------1.00--------------------------------------------------------
................................................................................................AGGAATGTAGATGGCTTAA.......................................................................................................................................................191.000.00----------------------------------1.00----------------------------------
.............AGCAACATCTTTGAGCCTGGAG.......................................................................................................................................................................................................................................2211.001.00--------1.00------------------------------------------------------------
......................TTTGAGCCTGGAGCTGATGGGGCC............................................................................................................................................................................................................................2411.001.00-------1.00-------------------------------------------------------------
...............CAACATCTTTGAGCCTGGAGCTG....................................................................................................................................................................................................................................2311.001.00-----------------1.00---------------------------------------------------
............................CCTGGAGCTGATGGGGCCCTTGG.......................................................................................................................................................................................................................2311.001.00----------------------------------------1.00----------------------------
.................ACATCTTTGAGCCTGGAGCTGATGGGGCC............................................................................................................................................................................................................................2911.001.00---1.00-----------------------------------------------------------------
.....................CTTTGAGCCTGGAGCTGATGG................................................................................................................................................................................................................................2111.001.00-----------------------------------1.00---------------------------------
...............CAACATCTTTGAGCCTGGAGCTGATGGGGC.............................................................................................................................................................................................................................3011.001.00-----------------------------------------1.00---------------------------
.............................................................................................................................................................................................................................TTTGGGGCCTTGCTTTG............................171.000.00---------------------------------------------1.00-----------------------
.......................................................CAAAAAGGATGCTTTCAT.................................................................................................................................................................................................181.000.00--------------------------------1.00------------------------------------
........................TGAGCCTGGAGCTGATGGG...............................................................................................................................................................................................................................1911.001.00----1.00----------------------------------------------------------------
...................ATCTTTGAGCCTGGAGC......................................................................................................................................................................................................................................1711.001.00---1.00-----------------------------------------------------------------
......................TTTGAGCCTGGAGCTGATGGGGCG............................................................................................................................................................................................................................2411.001.00-------1.00-------------------------------------------------------------
............................CCTGGAGCTGATGGGGCCCT..........................................................................................................................................................................................................................2011.001.00---------------------------------1.00-----------------------------------
...............................................................................................................................................................GTGGGTGGGCAGGCCAGGTGGGAT...................................................................................241.000.00--------------------------------------------1.00------------------------
.................ACATCTTTGAGCCTGGAG.......................................................................................................................................................................................................................................1811.001.00-------------------------------------------------------1.00-------------
......................TTTGAGCCTGGAGCTGGTGG................................................................................................................................................................................................................................201.000.00--------------1.00------------------------------------------------------
.......................................................................................................................................................................................................................GGATTCTTTGGGGCCTTGC................................1911.001.00------------------------------------1.00--------------------------------
.................................AGCTGATGGGGCCCTTGGATTT...................................................................................................................................................................................................................221.000.00-----------1.00---------------------------------------------------------
...................................CTGATGGGGCCCTTGGATT....................................................................................................................................................................................................................191.000.00------------------------------------------------------1.00--------------
...............CAACATCTTTGAGCCTG..........................................................................................................................................................................................................................................1740.500.50----------------------------------------------------------------0.50----
.............................................................................................................................................................................................................................TTTGGGGCCTTGCTTTC............................1720.500.50---------------------0.50-----------------------------------------------
..............................................................................................................................................................................................................................TTGGGGCCTTGCTTTC............................1630.330.33----------------------0.33----------------------------------------------
...............................................................................................................................................................................................................................................CTTCTGTGCCAGAAC............1580.250.25------------------------------------------------------------------0.12-0.12
.............................CTGGAGCTGATGGGGC.............................................................................................................................................................................................................................1670.140.14-----------------------------------------------------------------0.14---
.....GTGGATCCAGCAACA......................................................................................................................................................................................................................................................1570.140.14--------0.14------------------------------------------------------------

Antisense strand
CCTCAGTGGATCCAGCAACATCTTTGAGCCTGGAGCTGATGGGGCCCTTGGTGAGCAAAAAGGATGCTTTGGCTTGCTCCAGGAAGGGGCAGCCAGAGGAATGTAGATGGCCTTGGTTTAGGGGTGTTGCCAAGGTGGGATGAGGTTGATGATCTGGTTGTGGGTGGGCAGGCCAGGTGGTAAAGGCCATTGCTAACATCTGCCCTTGTCCCCCAGGATTCTTTGGGGCCTTGCTTTCTCTTCTGTGCCAGAACTTCTCTATGGTG
................................................................................................................................................................((((.(((((((.((((((.....(((....)))..)))))).))).))))))))...................................................
...........................................................................................................................................................156.........................................................216................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189783SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM532874(GSM532874)
G699T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR040007(GSM532892)
G601T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029130(GSM416759)
DLD2. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM532879(GSM532879)
G659N. (cervix)		SRR038863(GSM458546)
MM603. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................................................AGGTGGGATGAGGTTACAC................................................................................................................... 191.000.00----------------------------------------------------1.00----------------
......................................................................................................................................................................................................TCTGCCCTTGTCCCCCAAATG............................................... 211.000.00-------------1.00-------------------------------------------------------
.........................................................................................................................................................................................................................................................AGAACTTCTCTATGGCTTA 191.000.00-1.00-------------------------------------------------------------------
..................................................................................CCTCTGGCTGCCCCTTC....................................................................................................................................................................... 1780.120.12-------------------------------------------------------------------0.12-