ID: uc003nuk.2_intron_2_0_chr6_31549637_r
GENE: (1)
chr6:31549587-31550082-


(7)
B-CELL
(1)
BRAIN
(2)
BREAST
(13)
CELL-LINE
(1)
CERVIX
(8)
HEART
(1)
KIDNEY
(1)
LIVER
(1)
OTHER
(32)
SKIN

Sense strand
TCACTGTCCTGGCTGTGCTGGCCTTAGTGCCCCAGGATCAGGGAGGACTGGTGAGTGGCTGCAACAGGCCCTGGTGGAGAGTTGTATCTTGCGGATGCTTGGCTCCCTCTGGTTGTGCCTGTGGTCTTTTGCCCCCTCTGGCTCAGCTGGCTCGGCTGTCCCTGGTGGGGATGTCTTGTCTCTTTGCTGACTCTCTTTCCATGTTCCTGTGATGTTGTGCTTGTGTCCCGACATAAGCCCCTTGTGTCTCCTCTCCTCTTCCCGAGGTACATCTGTTTCTCCGCCCAAGTACCTATGCCTTGCTTGTTCTCCCTTCTAAGGAGGTGTGTGTTGGGGATGGTGCTGGTAGGAGAAACCCCAGGCCTGCAGCTTGGGTCCACTTTCAGAGGGGTAGGGGTGACATGAGCTGAATCTGAACTCTGGGCACTGTGACCCCACCCAACCAGGTAACGGAGACGGCCGACCCCGGGGCACAGGCCCAGCAAGGACTGGGTAA
..........................................................................................................................................................................................................................................................................................((((.((((((.((.(((.((....(((((.......))))).....)).))).))))))))....((((....(((((((.....)))))))..((..(((((....((.......)).....)))))..))..)))))))).......................................................................
..........................................................................................................................................................................................................................................................................................283............................................................................................................................................426....................................................................
SizePerfect hitTotal NormPerfect NormSRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATCTGAACTCTG..........................................................................16570.2070.2037.605.205.00-2.202.60---2.00---1.600.600.600.401.20-0.200.20----------1.00------0.800.600.600.600.600.600.600.600.60-0.400.400.400.40-0.400.400.20-0.20-0.200.200.200.200.20-0.200.20
.....................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAATCTGAACTCTG..........................................................................17115.0015.004.005.002.00--1.00---1.00-----1.001.00--------------------------------------------------
..........................................GAGGACTGGTGAGTGGCTGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................215.000.00---5.00---------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGAATCTGAACTCTGAAC.......................................................................183.000.00-------3.00-----------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGAATCTGAACTCTG..........................................................................1813.003.001.00---2.00--------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................AGAGGGGTAGGGGTGACATGAGCT........................................................................................2412.002.00------------2.00------------------------------------------------------
...............................................................................................................................................................................................................................................................................................AGTACCTATGCCTTGGAAA..............................................................................................................................................................................................192.000.00--------2.00----------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCGACCCCGGGGACC......................1821.000.50------------------------------1.00------------------------------------
.............................CCCCAGGATCAGGGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00----------------------------------1.00--------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCAACCAGGTAACGGA..........................................1911.001.00----------1.00--------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCTGAATCTGAACTCTG..........................................................................2011.001.00----------1.00--------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................TGTGTTGGGGATGGTGCT........................................................................................................................................................1811.001.00----------------------1.00--------------------------------------------
.................................AGGATCAGGGAGGACTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-----------------------------1.00-------------------------------------
....................................ATCAGGGAGGACTGGGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------1.00----------------------------------------------------------
.......................................AGGGAGGACTGGTGAGTGGCTGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.00-------------------------------------1.00-----------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGGCACTGTGACCTCTG..........................................................201.000.00-1.00-----------------------------------------------------------------
........................................................................................................................................................................................TGCTGACTCTCTTTCCATGTTCC.................................................................................................................................................................................................................................................................................................2311.001.00--------------1.00----------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................CCAGGCCTGCAGCTTCA..........................................................................................................................171.000.00-----------------------------------1.00-------------------------------
............................................................................................................................................................TGTCCCTGGTGGGGAGCCA.................................................................................................................................................................................................................................................................................................................................191.000.00-------------------------1.00-----------------------------------------
...................................................................................................................TGCCTGTGGTCTTTTTG............................................................................................................................................................................................................................................................................................................................................................................171.000.00---------------------------1.00---------------------------------------
.................................................................................................................................................................................................................................................................................................................................................TGGTGCTGGTAGGAGCAGC............................................................................................................................................191.000.00--------------------------1.00----------------------------------------
.....................................................................................................................................................................................................................................................................................................................................GTGTGTTGGGGATGGTGCTG.......................................................................................................................................................2011.001.00------1.00------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGGCCGACCCCGGGGC........................2111.001.00-----------------------1.00-------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCGACCCCGGGG.........................1520.500.50-----------------------------------------------0.50-------------------
....................................................................................................................................................................................................................................................................................................................CTCCCTTCTAAGGAGG............................................................................................................................................................................1630.330.33--------------------------------------------------------0.33----------

Antisense strand
TCACTGTCCTGGCTGTGCTGGCCTTAGTGCCCCAGGATCAGGGAGGACTGGTGAGTGGCTGCAACAGGCCCTGGTGGAGAGTTGTATCTTGCGGATGCTTGGCTCCCTCTGGTTGTGCCTGTGGTCTTTTGCCCCCTCTGGCTCAGCTGGCTCGGCTGTCCCTGGTGGGGATGTCTTGTCTCTTTGCTGACTCTCTTTCCATGTTCCTGTGATGTTGTGCTTGTGTCCCGACATAAGCCCCTTGTGTCTCCTCTCCTCTTCCCGAGGTACATCTGTTTCTCCGCCCAAGTACCTATGCCTTGCTTGTTCTCCCTTCTAAGGAGGTGTGTGTTGGGGATGGTGCTGGTAGGAGAAACCCCAGGCCTGCAGCTTGGGTCCACTTTCAGAGGGGTAGGGGTGACATGAGCTGAATCTGAACTCTGGGCACTGTGACCCCACCCAACCAGGTAACGGAGACGGCCGACCCCGGGGCACAGGCCCAGCAAGGACTGGGTAA
..........................................................................................................................................................................................................................................................................................((((.((((((.((.(((.((....(((((.......))))).....)).))).))))))))....((((....(((((((.....)))))))..((..(((((....((.......)).....)))))..))..)))))))).......................................................................
..........................................................................................................................................................................................................................................................................................283............................................................................................................................................426....................................................................
SizePerfect hitTotal NormPerfect NormSRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................................................................................................................................................................................ATAGGTACTTGGGCGGAGAAACAGA........................................................................................................................................................................................................ 2512.002.00------2.00------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................AAGTACCTATGCCTTCA................................................................................................................................................................................................. 171.000.00-1.00-----------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCACCCAACCAGGGAGA............................................. 191.000.00-------------------1.00-----------------------------------------------
............................................................................................................................................................................................................................................................................CTTGGGCGGAGAAACAGATGT............................................................................................................................................................................................................... 2111.001.00------------------------1.00------------------------------------------
.............................................................................................................................................................................................................................................................................................................GCTTGTTCTCCCTTCTTGGA............................................................................................................................................................................... 201.000.00--------------------1.00----------------------------------------------
..............................................................................................................................................................................................................................................................................TTGGGCGGAGAAACAGAT................................................................................................................................................................................................................ 1811.001.00------------------1.00------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................GGGATGGTGCTGGTAAGTG................................................................................................................................................ 191.000.00---------------------1.00---------------------------------------------
....................................................................................................................................................................................................................................................................................................................AACACACACCTCCTTAGAAGGGAG.................................................................................................................................................................... 2411.001.00-----------1.00-------------------------------------------------------
...........................................................................................................................GAGCCAGAGGGGGCAAAAGAC................................................................................................................................................................................................................................................................................................................................................................ 2111.001.00------------------------------------1.00------------------------------
.........................................................................................................................................................................................................................................................................................................AGAAGGGAGAACAAGCAAGG................................................................................................................................................................................... 2011.001.00--------------------------------1.00----------------------------------
................................................................................................................................................................................................................................................................ACAGATGTACCTCGGGAAGA............................................................................................................................................................................................................................ 2011.001.00-----------1.00-------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................AATCTGAACTCTGGGACCT.................................................................... 191.000.00---------------------------------1.00---------------------------------
......................................................................................................................................................................................................................................................................................................................................................................ACCCAAGCTGCAGGCCTG........................................................................................................................ 1851.001.00------------------0.20---------------------------------0.40-----0.20-----0.20--
.............................................................................................................................................................................................................................................................................................................................................................AGGCCTGGGGTTTCTC................................................................................................................................... 1650.200.20-------------------------------------------------------0.20-----------
.........................................................AGGGCCTGTTGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................ 1560.170.170.17------------------------------------------------------------------