ID: uc003nsc.1_intron_23_0_chr6_30891283_f.3p
GENE: (24)
chr6:30891931-30892180+


(2)
AGO2.ip
(2)
B-CELL
(2)
BREAST
(9)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
HELA
(1)
LIVER
(2)
OTHER
(15)
SKIN

Sense strand
TGCAGAGAATTGCTGTCCTGGAGTCCCCTTCTTTGTGCTGAGTGTGTCCTGGGACTGTGGATCATATCAGAAGTGCTAAGTGCTTCTGCCTGTCCCTCTCTCCCAGGACCCATGGCCTGCCCCACTGGCGGGTAGCAGTGGCTGTAGGGAGGAGGGCTGTGGCCCTGGACCTGTCCTCTGACCATTGGCTTCCTCTCCAGGAGGCTGTGAAGCCCGTGCTGTGGCACTCGCCCCGCCCCCTGGGGCCCCC
..................................................................................................................................((.((((((((....((((((((((((....)))))...))).))))....)))))).)).)).........................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189787SRR343335DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR029125(GSM416754)
U2OS. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR037935(GSM510473)
293cand3. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR038863(GSM458546)
MM603. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................................................................................TGACCATTGGCTTCCTCTCCAG..................................................2226.506.505.001.00------------------------------0.50--------
..................................................................................................................................................................................TGACCATTGGCTTCCTCCAG....................................................205.000.002.00----2.00-----1.00-----------------------------
..................................................................................................................................................................................TGACCATTGGCTTCCTCTCCAGT.................................................2325.006.502.00--2.00----------------1.00--------------------
.................................................................................................................................................................................CTGACCATTGGCTTCCTCTCCAT..................................................2324.001.502.002.00---------------------------------------
..................................................................................................................................................................................TGACCATTGGCTTCCTCTCCA...................................................2123.003.001.50-------1.50--------------------------------
........................................................................................................................................................................................................................................CCGCCCCCTGGGGCCGCGG192.000.00--2.00--------------------------------------
.......................................................................................................................................CAGTGGCTGTAGGGAGGAGGGC.............................................................................................2222.002.00-----------------------------0.500.500.50--0.50------
..................................................................................................................................................................................TGACCATTGGCTTCCTCTCCAT..................................................2222.003.00----------------1.00-1.00----------------------
...............................................................................................................................................................................................................................GCACTCGCCCCGCCCTGT.........182.000.00----2.00------------------------------------
................................................................................................................................................TAGGGAGGAGGGCTGTGGCCCTGTT.................................................................................252.000.00-------2.00---------------------------------
..................................................................................................................................................................................TGACCATTGGCTTCCTCTCCAA..................................................2222.003.00-2.00---------------------------------------
.................................................................................................................................................................................CTGACCATTGGCTTCCTCTCCA...................................................2221.501.50---------1.50-------------------------------
..................................GTGCTGAGTGTGTCCTGGGACTGTGGAT............................................................................................................................................................................................2821.001.00----------1.00------------------------------
..................................................................................................................................................................................TGACCATTGGCTTCCTCTCCCGT.................................................2321.001.00----------------------1.00------------------
..................................................................................................................................................GGGAGGAGGGCTGTGGCCACCG..................................................................................221.000.00------------------------1.00----------------
................................................................................................................................................TAGGGAGGAGGGCTGTGGCCCTCT..................................................................................241.000.00----1.00------------------------------------
..................................................................................................................................................................................TGACCATTGGCTTCCTCTCC....................................................2021.001.001.00----------------------------------------
...........................................................................................................................................................................................................................TGTGGCACTCGCCCCTAG.............181.000.00-------------1.00---------------------------
.................................................TGGGACTGTGGATCATATCTG....................................................................................................................................................................................211.000.00-----------------1.00-----------------------
...................................................................................................................................GTAGCAGTGGCTGTAGGGAGGAGGA..............................................................................................251.000.00-------------------------1.00---------------
........................................................................................................................................AGTGGCTGTAGGGAGGTTAT..............................................................................................201.000.001.00----------------------------------------
................................................................................................................................................TAGGGAGGAGGGCTGTGGCAAGA...................................................................................231.000.00---1.00-------------------------------------
...................................................................................................................................GTAGCAGTGGCTGTAAAAA....................................................................................................191.000.00--------------------------1.00--------------
.......................................................................................................................................................................................................GGAGGCTGTGAAGCCCGCG................................191.000.00---------------1.00-------------------------
.....................................................................................................................................................................................................................................GCCCCGCCCCCTGGGGCG...181.000.00--1.00--------------------------------------
.................................................................................................................................................................................CTGACCATTGGCTTCCTCTCCAGT.................................................2421.000.501.00----------------------------------------
......................................................................................................................................GCAGTGGCTGTAGGGAGGAGGGC.............................................................................................2321.001.00----------------------------0.50----0.50-------
........................................................................................................................................................................................................................................CCGCCCCCTGGGGCCGGGG191.000.00--1.00--------------------------------------
......................................................................................................................................................................................................AGGAGGCTGTGAAGCCCTGC................................201.000.00-------------------1.00---------------------
..............................CTTTGTGCTGAGTGTCACC.........................................................................................................................................................................................................191.000.00------1.00----------------------------------
..................................................................................................................................................................................TGACCATTGGCTTCCTCTCTAG..................................................221.000.001.00----------------------------------------
................................................CTGGGACTGTGGATCACTG.......................................................................................................................................................................................191.000.00---------------------1.00-------------------
.......................................................................................................................................................................................................GGAGGCTGTGAAGCCTGG.................................181.000.001.00----------------------------------------
...........................................................................................................................................................................................................................TGTGGCACTCGCCCCGGCCG...........201.000.001.00----------------------------------------
..................................................................................................................................................................................TGACCATTGGCTTCCTTTCC....................................................201.000.001.00----------------------------------------
..........TGCTGTCCTGGAGTCGTCT.............................................................................................................................................................................................................................191.000.00-----------------------1.00-----------------
..............................CTTTGTGCTGAGTGTCAAG.........................................................................................................................................................................................................191.000.00------1.00----------------------------------
................................................................................................................................................TAGGGAGGAGGGCTGTGGA.......................................................................................191.000.00------------1.00----------------------------
...........................................................................................................................................GGCTGTAGGGAGGAGGGC.............................................................................................1830.670.67---------------------------0.67-------------
................................................................................................................................................TAGGGAGGAGGGCTGTGGCC......................................................................................2020.500.50------0.50----------------------------------
................................................................................................................................................TAGGGAGGAGGGCTGTGGCCC.....................................................................................2120.500.50---0.50-------------------------------------
.................................................................................................................................................................................CTGACCATTGGCTTCCTCTCCAG..................................................2320.500.50-----------------------------------0.50-----
..........................................................................................................................................TGGCTGTAGGGAGGAGG...............................................................................................1760.330.33--------------------------------------0.170.17-
.............................................................................................................................................CTGTAGGGAGGAGGGC.............................................................................................1640.250.25------------------------------------0.25----
.............................................................................................CCCTCTCTCCCAGGACC............................................................................................................................................1740.250.25-------------------------------------0.25---
.....................................................................................................................................................................................CCATTGGCTTCCTCTC.....................................................1660.170.17------------------------------------0.17----

Antisense strand
TGCAGAGAATTGCTGTCCTGGAGTCCCCTTCTTTGTGCTGAGTGTGTCCTGGGACTGTGGATCATATCAGAAGTGCTAAGTGCTTCTGCCTGTCCCTCTCTCCCAGGACCCATGGCCTGCCCCACTGGCGGGTAGCAGTGGCTGTAGGGAGGAGGGCTGTGGCCCTGGACCTGTCCTCTGACCATTGGCTTCCTCTCCAGGAGGCTGTGAAGCCCGTGCTGTGGCACTCGCCCCGCCCCCTGGGGCCCCC
..................................................................................................................................((.((((((((....((((((((((((....)))))...))).))))....)))))).)).)).........................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189787SRR343335DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR029125(GSM416754)
U2OS. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR037935(GSM510473)
293cand3. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR038863(GSM458546)
MM603. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................TCCTGGGACTGTGGATCAA......................................................................................................................................................................................... 191.000.00--------------1.00--------------------------
..................................................................................................................................GGTAGCAGTGGCTGTAGAAC.................................................................................................... 201.000.00-----1.00-----------------------------------
........................CAGCACAAAGAAGGGG.................................................................................................................................................................................................................. 1660.170.17----------------------------------------0.17