ID: uc003nqx.3_intron_4_0_chr6_30620495_f
GENE: (5)
chr6:30620445-30620628+


(2)
B-CELL 		(3)
BRAIN 		(9)
CELL-LINE 		(5)
HEART 		(1)
HELA 		(5)
LIVER 		(5)
OTHER 		(13)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
CTTTCTACCTGAATTCCAGTGGCCTCATTTGTCGCCATCGTCTAGATAAAGTGAGTCCTAGGTAGGGCTGGGTGGGGTAAAGGGTAGAACATTTGTGTGCCTCCCCCAACTGGCATTAACCTTTCTCCCTGCAGCTGATGCCTTCACACTCACCTCCAACGCCTGTGAAGAAGCTGCTAGTGGG
.............................................................((((((((((.(((((....(((((..((....)).))))).))))).))))).............)))))....................................................
.........................................................58..........................................................................134................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189787SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................GGCATTAACCTTTCTCCCTGCAGA.................................................24126.009.0023.00-------------------------------------1.001.00-1.00---
...............................................................................................................GGCATTAACCTTTCTCCCTGCAGAA................................................25123.009.005.0014.00---4.00---------------------------------------
..............................................................................................................TGGCATTAACCTTTCTCCCTGCAGA.................................................25110.004.0010.00--------------------------------------------
..................................................GTGAGTCCTAGGTAGGGCTGGGTGGGGTAAAGGGTAGAACATTTGTGTGCCTCCCCCAACTGGCATTAACCTTTCTCCCTGCAG..................................................8419.009.00--9.00------------------------------------------
...............................................................................................................GGCATTAACCTTTCTCCCTGCAG..................................................2319.009.005.00------1.00-2.00----------1.00------------------------
.............................................................................................................................................................AACGCCTGTGAAGAAGCT.........1818.008.00---5.00------1.00----1.00--------------------1.00--------
..............................................................................................................TGGCATTAACCTTTCTCCCTGCAG..................................................2414.004.00-------------1.001.00--1.00------1.00--------------------
..............................................................TAGGGCTGGGTGGGGTAAAGGGTA..................................................................................................2414.004.00------------------1.00---------1.00--1.001.00------------
.......................................................................................................CCCCAACTGGCATTAACCTTTCTCCCTGCAGA.................................................322.000.00-----------1.00-----------------1.00---------------
......................................................................................................................ACCTTTCTCCCTGCACAG................................................182.000.00------------1.00----------------------1.00---------
.................................GCCATCGTCTAGATAAACTG...................................................................................................................................201.000.00----------------------------------------1.00----
.......................................................................................................CCCCAACTGGCATTAACCTTTCTCCCTGCAGAA................................................331.000.00-----------1.00---------------------------------
.............................................................................................................................................CTTCACACTCACCTCCAAC........................1911.001.00----------------1.00----------------------------
..............................................................................................................................................TTCACACTCACCTCCAACGCC.....................2111.001.00-------------------------------------1.00-------
................................................................................................................................................................GCCTGTGAAGAAGCTGCTA.....1911.001.00----------------------1.00----------------------
..............................................................................................................................................................ACGCCTGTGAAGAAGCTGCTAGCGGG261.000.00------1.00--------------------------------------
...............................................................AGGGCTGGGTGGGGTAAAGGGTA..................................................................................................2311.001.00------------------------------------------1.00--
......ACCTGAATTCCAGTGGCCTC..............................................................................................................................................................2011.001.00-------------------------1.00-------------------
..............................................................................................................................................................ACGCCTGTGAAGAAGCTGCCAG....221.000.00------1.00--------------------------------------
.................................GCCATCGTCTAGATAAAGTGAG.................................................................................................................................2211.001.00--1.00------------------------------------------
...............................................................................................................................................................CGCCTGTGAAGAAGCTGCTAG....2111.001.00---------------------------1.00-----------------
..........................................................................................................................................................TCCAACGCCTGTGAAGAAGCTGCTAGTGG.2911.001.00----------------------------------1.00----------
.............................................................................................................................................................AACGCCTGTGAAGAAGCTGCTAG....2311.001.00-------1.00-------------------------------------
.............................................................................................................................................................AACGCCTGTGAAGAAGCTGCT......2111.001.00-----------------------1.00---------------------
...................................................................................GTAGAACATTTGTGTGCCTCCCC..............................................................................2311.001.00---------------------1.00-----------------------
..............................................................................................................................................................ACGCCTGTGAAGAAGCTGCTAGCG..241.000.00--------1.00------------------------------------
..........................................................................................................................................................TCCAACGCCTGTGAAGAAGCT.........2111.001.00-------------------1.00-------------------------
..............................................................TAGGGCTGGGTGGGGTAAAGGGCAG.................................................................................................251.000.00-------------------------------------------1.00-
..............................................................................................................................................................ACGCCTGTGAAGAAGCTGCGG.....211.000.00--------1.00------------------------------------
.................................................................................................................CATTAACCTTTCTCCCTGCAG..................................................2111.001.00---------------------------------1.00-----------
.................................................................................................................CATTAACCTTTCTCCCTGCAGT.................................................2211.001.00------1.00--------------------------------------
..............................................................................................................TGGCATTAACCTTTCTCCCTGCAGAT................................................2611.004.001.00--------------------------------------------
...........................................................................................................................................................CCAACGCCTGTGAAGAAG...........1811.001.00---1.00-----------------------------------------
.............TTCCAGTGGCCTCATTCT.........................................................................................................................................................181.000.00----------1.00----------------------------------

Antisense strand
CTTTCTACCTGAATTCCAGTGGCCTCATTTGTCGCCATCGTCTAGATAAAGTGAGTCCTAGGTAGGGCTGGGTGGGGTAAAGGGTAGAACATTTGTGTGCCTCCCCCAACTGGCATTAACCTTTCTCCCTGCAGCTGATGCCTTCACACTCACCTCCAACGCCTGTGAAGAAGCTGCTAGTGGG
.............................................................((((((((((.(((((....(((((..((....)).))))).))))).))))).............)))))....................................................
.........................................................58..........................................................................134................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189787SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................................................................CCTGTGAAGAAGCTGATC..... 185.000.00----5.00----------------------------------------
..........................................................................................................CAACTGGCATTAACCTCGAT.......................................................... 201.000.00------------------------------1.00--------------
.......................................................................................................................CCTTTCTCCCTGCAGCTGGA............................................. 201.000.00--------------------------1.00------------------
........................................................................................................................................GTGAGTGTGAAGGCATC............................... 1720.500.50--------------------------------------------0.50