ID: uc003nqr.3_intron_1_0_chr6_30595298_f
GENE: (2)
chr6:30595248-30595462+


(1)
AGO1.ip
(1)
AGO2.ip
(3)
B-CELL
(4)
BRAIN
(1)
BREAST
(18)
CELL-LINE
(1)
FIBROBLAST
(3)
HEART
(1)
KIDNEY
(4)
LIVER
(2)
OTHER
(14)
SKIN

Sense strand
AGCAGCAAATTATGACCATTATAGATGAACTGGGCAAGGCTTCTGCCAAGGTACTGGAGAGTTTTTAGATGGAGTAAAGGGAGGACCTCTGTGGGGATGGTATATAAGGGAGGCCTGGGTCCTTCGGAGAGACTTGCAGAAAGTCTGACTTAATCTTCCCTGCAGGCCCAGAATCTTTCCGCTCCTATCACTAGTGCATCAAGGATGCAGAGTAA
.....................................................((((((...)))))).....((..((((((((.(((((.((((..(((...........)))....)))).)))))((((((.....)))))).......))))))))))....................................................
..................................................51................................................................................................................165................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM339996(GSM339996)
hues6Neuron. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR343335SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR038856(GSM458539)
D11. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...............................................................................................................................................TCTGACTTAATCTTCCCTGCAG..................................................22175.0075.0010.0014.002.004.0010.005.002.00--2.002.001.00-2.001.001.00----1.001.00-1.00-1.00-1.001.00--1.001.001.00-1.001.001.00---1.00--1.001.00--1.00--1.001.001.00-
...............................................................................................................................................TCTGACTTAATCTTCCCTG.....................................................19111.0011.00--11.00----------------------------------------------------
...............................................................................................................................................TCTGACTTAATCTTCCCTGCAGA.................................................2317.0075.001.00-----1.00-----------------1.00-----1.00-------1.00-1.00--1.00-----------
......................AGATGAACTGGGCAAGGCTT.............................................................................................................................................................................2014.004.00------2.00-----------1.00---------------1.00--------------------
.......................................................................................................................TCCTTCGGAGAGACTTG...............................................................................1723.503.50-------3.50-----------------------------------------------
..................TTATAGATGAACTGGGCAAGGCTTCTGCCAAGGC...................................................................................................................................................................343.000.00---3.00---------------------------------------------------
...............................................................................................................................................TCTGACTTAATCTTCCCTGC....................................................2013.003.001.00-----1.00---------------1.00--------------------------------
...............................................................................................................................................TCTGACTTAATCTTCCCTGCAGT.................................................2312.0075.00-----2.00-------------------------------------------------
...............................................................................................................................................TCTGACTTAATCTTCCCTGCAT..................................................222.000.001.00----------------------------------------------1.00-------
.......................GATGAACTGGGCAAGGCTTCT...........................................................................................................................................................................2112.002.00---1.00-------1.00-------------------------------------------
...........................................TGCCAAGGTACTGGAAG...........................................................................................................................................................172.000.00-------2.00-----------------------------------------------
...............................................................................................................................................TCTGACTTAATCTTCCCTGCAA..................................................221.000.00----------------1.00--------------------------------------
..........................................................GAGTTTTTAGATGGAGAC...........................................................................................................................................181.000.00------------1.00------------------------------------------
...........................AACTGGGCAAGGCTTACGT.........................................................................................................................................................................191.000.00-------------------------------------------------1.00-----
....................ATAGATGAACTGGGCAAG.................................................................................................................................................................................1811.001.00---------------------------------------1.00---------------
...............................................................................................................................................TCTGACTTAATCTTCCCTGCAGTA................................................2411.0075.00------1.00------------------------------------------------
........................................................................................................................CCTTCGGAGAGACTTGCAG............................................................................1911.001.00--------------------------------------------------1.00----
...............................................................................................................................................TCTGACTTAATCTTCCCTGCAAAG................................................241.000.00----------------------------------------------1.00--------
.................ATTATAGATGAACTGGGCAAGGCTTCTTC.........................................................................................................................................................................291.000.00---1.00---------------------------------------------------
...................................................................................................................................ACTTGCAGAAAGTCTTTT..................................................................181.000.00-----------------1.00-------------------------------------
.......................................................................GAGTAAAGGGAGGACCTCTGTGG.........................................................................................................................2311.001.00---1.00---------------------------------------------------
...............................................................................................................................................TCTGACTTAATCTTCCCTTCAG..................................................221.000.00---1.00---------------------------------------------------
.........................................................................................................................CTTCGGAGAGACTTGCAGA...........................................................................1911.001.00-------------------1.00-----------------------------------
.................ATTATAGATGAACTGGG.....................................................................................................................................................................................1711.001.00-----------------------------1.00-------------------------
......................AGATGAACTGGGCAAGGCTTCT...........................................................................................................................................................................2211.001.00------------1.00------------------------------------------
.............................................................................AGGGAGGACCTCTGTGGG........................................................................................................................1820.500.50--------------0.50----------------------------------------
.......................GATGAACTGGGCAAG.................................................................................................................................................................................1570.140.14---0.14---------------------------------------------------

Antisense strand
AGCAGCAAATTATGACCATTATAGATGAACTGGGCAAGGCTTCTGCCAAGGTACTGGAGAGTTTTTAGATGGAGTAAAGGGAGGACCTCTGTGGGGATGGTATATAAGGGAGGCCTGGGTCCTTCGGAGAGACTTGCAGAAAGTCTGACTTAATCTTCCCTGCAGGCCCAGAATCTTTCCGCTCCTATCACTAGTGCATCAAGGATGCAGAGTAA
.....................................................((((((...)))))).....((..((((((((.(((((.((((..(((...........)))....)))).)))))((((((.....)))))).......))))))))))....................................................
..................................................51................................................................................................................165................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM339996(GSM339996)
hues6Neuron. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR343335SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR038856(GSM458539)
D11. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.............................................................................................................................GGAGAGACTTGCAGAAAG........................................................................ 183.000.00--------3.00----------------------------------------------
.................................................................................................................CCTGGGTCCTTCGGAGGA.................................................................................... 181.000.001.00------------------------------------------------------
...............................................................................................................................................................AAGATTCTGGGCCTGCAG...................................... 1811.001.00------------------------------------------1.00------------
..........................................................................................................................................................................................ATCACTAGTGCATCAGGTC.......... 191.000.00--------------------------1.00----------------------------
...................................................................................................................................................................AGGCCCAGAATCTTTAGG.................................. 181.000.00--------1.00----------------------------------------------
................................................................................................................GCCTGGGTCCTTCGGATT..................................................................................... 181.000.00------------------------------------------------------1.00