ID: uc003nlr.2_intron_5_0_chr6_28888020_r.5p
GENE: (2)
chr6:28889469-28889718-


(1)
AGO1.ip 		(4)
AGO2.ip 		(13)
B-CELL 		(3)
BRAIN 		(7)
BREAST 		(13)
CELL-LINE 		(2)
HEART 		(3)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(1)
OTHER 		(15)
SKIN 		(1)
XRN.ip

Sense strand
TAAAGAAGAGACGTCGGGCCCAGGGGGAACAGGCACGAGCTGAACTCTTGGTAAGGGTTGTTGGAATTCACAGTTGGTTCTGCTGGTGCTCTCCTCTTCTGTAGAGCTGATGTTACTTCCCTTAAACTTGTCCAGCATGTCACCCAGAACTTGTAGGTAGAGGTGGATCAACCGCACATGGCAGTGGGAACTCACCCGGAGAACTAAGATTCCCTTACTTTTGGGGAAAGCATGGAGAAGCCAAGTTTGG
......................................................(((((((((((.......((..(((((((.((......))......)))))))..))...................)))))))....))))..........(((.((......)).))).............................................................................
..................................................51.........................................................................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR189782SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
...........CGTCGGGCCCAGGGGAG..............................................................................................................................................................................................................................1732.000.0025.00----3.00------------------------------------1.00------1.00--1.00----1.00------
........................................................................................................................................................GTAGGTAGAGGTGGACTG................................................................................1816.000.00-1.006.005.003.00---1.00-------------------------------------------------------
.......................................................................................................................................................TGTAGGTAGAGGTGGACT.................................................................................188.000.00-1.00-----3.00---3.00-----------------------1.00----------------------------
........................................................................................................................................................GTAGGTAGAGGTGGACT.................................................................................175.000.00-4.00------1.00-------------------------------------------------------
........................................................................................................................................................GTAGGTAGAGGTGGACTGG...............................................................................195.000.00-1.00--1.00--------------2.00----------------------------------------1.00---
.......................................................................................................................................................TGTAGGTAGAGGTGGACTG................................................................................194.000.00----------3.00----------------1.00------------------------------------
...........CGTCGGGCCCAGGGGA...............................................................................................................................................................................................................................163.000.00------------------------------------1.00-1.00------1.00------------------
........................GGGAACAGGCACGAGCTGAA..............................................................................................................................................................................................................2013.003.00---------3.00------------------------------------------------------
.......GAGACGTCGGGCCCATAC.................................................................................................................................................................................................................................182.000.00------------2.00---------------------------------------------------
...........CGTCGGGCCCAGGGGAGG.............................................................................................................................................................................................................................182.000.00---------------2.00------------------------------------------------
.......................................................................................................................................................TGTAGGTAGAGGTGGACTGG...............................................................................202.000.00-1.00------1.00-------------------------------------------------------
..........................GAACAGGCACGAGCTGAACTCTTG........................................................................................................................................................................................................2412.002.00----------------------------------------------1.00--------1.00--------
..................................................GTAAGGGTTGTTGGAATTCACAGTTGG.............................................................................................................................................................................2712.002.00--------------------2.00-------------------------------------------
................................GCACGAGCTGAACTCTTG........................................................................................................................................................................................................1821.501.50----------------------0.50--------------------------------------0.500.50-
....GAAGAGACGTCGGGCCCAG...................................................................................................................................................................................................................................1911.001.00----------------1.00-----------------------------------------------
....GAAGAGACGTCGGGCCC.....................................................................................................................................................................................................................................1711.001.00----------------------------------------------------------1.00-----
............................ACAGGCACGAGCTGAACTCTTT........................................................................................................................................................................................................221.000.00--------------------------------------------1.00-------------------
.............................CAGGCACGAGCTGAACTCTTG........................................................................................................................................................................................................2111.001.00-------------------------------------------1.00--------------------
........................GGGAACAGGCACGAGCTGAACTCTTGAG......................................................................................................................................................................................................2811.001.00--------------1.00-------------------------------------------------
........................GGGAACAGGCACGAGCTGAACTCTTG........................................................................................................................................................................................................2611.001.00----------------1.00-----------------------------------------------
...........................AACAGGCACGAGCTGAACTCTTGG.......................................................................................................................................................................................................2411.001.00------------------------------------------------------1.00---------
..................................................GTAAGGGTTGTTGGAGA.......................................................................................................................................................................................171.000.00-1.00--------------------------------------------------------------
..........................GAACAGGCACGAGCTGAACTCTTGAG......................................................................................................................................................................................................2611.002.00----------------------------------1.00-----------------------------
................................................TGGTAAGGGTTGTTGGAAT.......................................................................................................................................................................................1911.001.00-----------------1.00----------------------------------------------
.................................................................................................................................................AGAACTTGTAGGTAGAGGTG.....................................................................................2011.001.00---------------------------------------------------1.00------------
..............CGGGCCCAGGGGGAACAGGCACGAGCTG................................................................................................................................................................................................................2811.001.00----------------------------------------1.00-----------------------
.........................GGAACAGGCACGAGCTGAACTCTTGA.......................................................................................................................................................................................................261.000.00----------------------1.00-----------------------------------------
...AGAAGAGACGTCGGGCCCAGGGGGAAC............................................................................................................................................................................................................................2711.001.00------------------1.00---------------------------------------------
................................GCACGAGCTGAACTCTTGAGCC....................................................................................................................................................................................................2221.001.50--------------------------------1.00-------------------------------
............GTCGGGCCCAGGGGGGGGG...........................................................................................................................................................................................................................191.000.00------------------------------------------------1.00---------------
..................................................GTAAGGGTTGTTGGAATTCACA..................................................................................................................................................................................2211.001.00--------------------------------------------------1.00-------------
.........................................................................TTGGTTCTGCTGGTGTAG...............................................................................................................................................................181.000.00-------------------------1.00--------------------------------------
................................................................................................................................................................................................CACCCGGAGAACTAACC.........................................171.000.00----------------------------1.00-----------------------------------
...........................AACAGGCACGAGCTGAACT............................................................................................................................................................................................................1911.001.00-----------------------------------------------------------1.00----
..................................ACGAGCTGAACTCTTGGTAAG...................................................................................................................................................................................................2111.001.00---------------------------------1.00------------------------------
.......................GGGGAACAGGCACGAGCTGAA..............................................................................................................................................................................................................2111.001.00-------------------------------1.00--------------------------------
...........CGTCGGGCCCAGGGGGG..............................................................................................................................................................................................................................171.000.00-----1.00----------------------------------------------------------
..................................................GTAAGGGTTGTTGGAATT......................................................................................................................................................................................1811.001.00---------------------------------------1.00------------------------
.AAAGAAGAGACGTCGGGCCCAGGGGG...............................................................................................................................................................................................................................2611.001.00------------------1.00---------------------------------------------
..............................AGGCACGAGCTGAACTCTTGAGCC....................................................................................................................................................................................................241.000.00------------------------1.00---------------------------------------
...................................CGAGCTGAACTCTTGGTAAGG..................................................................................................................................................................................................2111.001.00-----------------------1.00----------------------------------------
......................GGGGGAACAGGCACGAGCT.................................................................................................................................................................................................................1911.001.00---------------------1.00------------------------------------------
........AGACGTCGGGCCCAGGGGGAACAGG.........................................................................................................................................................................................................................2511.001.00-----------------------------------------------------1.00----------
...AGAAGAGACGTCGGGCCCAG...................................................................................................................................................................................................................................2011.001.00--------------1.00-------------------------------------------------
..........................................................................................................................................................AGGTAGAGGTGGATCATG..............................................................................181.000.00-----------------------------1.00----------------------------------
............GTCGGGCCCAGGGGGAACAGGCACGAGCTGAA..............................................................................................................................................................................................................3211.001.00-----------------------------------------------1.00----------------
.........GACGTCGGGCCCAGGGGG...............................................................................................................................................................................................................................1811.001.00--------------------------1.00-------------------------------------
......................GGGGGAACAGGCACGAGCTGAACT............................................................................................................................................................................................................2411.001.00--------------------------------------------------------1.00-------
................................................................................................TTCTGTAGAGCTGATGTTACTTCCC.................................................................................................................................2511.001.00---------------------1.00------------------------------------------
...............................................................................CTGCTGGTGCTCTCCTCTTCT......................................................................................................................................................2111.001.00------------------------------1.00---------------------------------
...................................................................................................................................................................................................................CCCTTACTTTTGGGGAAAGCATGGAGAAGCC........3111.001.00------1.00---------------------------------------------------------
.............TCGGGCCCAGGGGGA..............................................................................................................................................................................................................................1540.500.50------------------------0.25--------------------------------------0.25
................................GCACGAGCTGAACTCTT.........................................................................................................................................................................................................1720.500.50-----------------------0.50----------------------------------------
...................CCAGGGGGAACAGGC........................................................................................................................................................................................................................1560.170.17------------0.17---------------------------------------------------

Antisense strand
TAAAGAAGAGACGTCGGGCCCAGGGGGAACAGGCACGAGCTGAACTCTTGGTAAGGGTTGTTGGAATTCACAGTTGGTTCTGCTGGTGCTCTCCTCTTCTGTAGAGCTGATGTTACTTCCCTTAAACTTGTCCAGCATGTCACCCAGAACTTGTAGGTAGAGGTGGATCAACCGCACATGGCAGTGGGAACTCACCCGGAGAACTAAGATTCCCTTACTTTTGGGGAAAGCATGGAGAAGCCAAGTTTGG
......................................................(((((((((((.......((..(((((((.((......))......)))))))..))...................)))))))....))))..........(((.((......)).))).............................................................................
..................................................51.........................................................................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR189782SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
........................................................................GTTGGTTCTGCTGGTGCTTG.............................................................................................................................................................. 201.000.00-------------------------------------1.00--------------------------
...AGAAGAGACGTCGGGCGC..................................................................................................................................................................................................................................... 181.000.00------1.00---------------------------------------------------------