uc003nle.3_intron_1_0_chr6_28327766

TGGTGCTATTGGAGTATTTGGAGAGGCAGCTGGATGAGCCGGCGCCGCAGGTAGAAAGAACAGGTTTAGTATCTGAGCGCTGTGGCCTGTTTCCTCCTGAAATCCCAGATCAGAGTGAGGGGCATTCCTTTAACATCCAGGAGTTCTTCATCTCTTTTTTGTACCGTGAACCTCCTTGGCAGTAAGGTGAAGTCCCTGGACTCCTTCTCAGAATAATTTTTTTTTTAAAATACATAAACCATAAAGGATT
............................................((.((((.((...(((((((((((((........)))).))))))))).))))))......((((..((((((((((((..((((.........)))))))))))).))))..))))................)).......................................................................
............................................45.......................................................................................................................................182..................................................................

Size

Perfect hit

Total Norm

Perfect Norm

GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)

TAX577739(Rovira)
total RNA. (breast)

GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)

GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)

GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)

TAX577744(Rovira)
total RNA. (breast)

GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)

SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)

GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)

TAX577453(Rovira)
total RNA. (breast)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)

SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)

SRR040036(GSM532921)
G243N. (cervix)

SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)

SRR189782

TAX577740(Rovira)
total RNA. (breast)

SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)

GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)

TAX577742(Rovira)
total RNA. (breast)

SRR037941(GSM510479)
293DroshaTN. (cell line)

TAX577579(Rovira)
total RNA. (breast)

SRR060168(GSM565978)
5-8F_nucleus. (cell line)

GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)

TAX577745(Rovira)
total RNA. (breast)

GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)

TAX577743(Rovira)
total RNA. (breast)

SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)

SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)

GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)

TAX577746(Rovira)
total RNA. (breast)

DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)

SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)

SRR037937(GSM510475)
293cand2. (cell line)

SRR015358(GSM380323)
Nàøve B Cell (Naive39). (B cell)

SRR189785

SRR038855(GSM458538)
D10. (cell line)

SRR040031(GSM532916)
G013T. (cervix)

SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)

SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)

SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)

TAX577741(Rovira)
total RNA. (breast)

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR040038(GSM532923)
G531N. (cervix)

DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR038860(GSM458543)
MM426. (cell line)

SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)

SRR033728(GSM497073)
MALT (MALT413). (B cell)

SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)

SRR040035(GSM532920)
G001T. (cervix)

SRR015361(GSM380326)
Memory B cells (MM55). (B cell)

SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)

SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)

SRR033731(GSM497076)
h929 Cell line (h929). (B cell)

SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)

SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)

................................................AGGTAGAAAGAACAGGTCTTG.....................................................................................................................................................................................

66.00

0.00

1.00

5.00

4.00

3.00

4.00

1.00

2.00

1.00

3.00

2.00

1.00

2.00

1.00

2.00

1.00

2.00

1.00

2.00

1.00

................................................AGGTAGAAAGAACAGGTCTT......................................................................................................................................................................................

4.00

0.00

1.00

................................................AGGTAGAAAGAACAGGTATTG.....................................................................................................................................................................................

3.00

0.00

1.00

................................................AGGTAGAAAGAACAGGTCTTA.....................................................................................................................................................................................

3.00

0.00

2.00

1.00

................................................AGGTAGAAAGAACAGGTGTTG.....................................................................................................................................................................................

3.00

0.00

1.00

................................................AGGTAGAAAGAACAGGTCCTG.....................................................................................................................................................................................

2.00

0.00

1.00

...............................................CAGGTAGAAAGAACAGGTCTTG.....................................................................................................................................................................................

2.00

0.00

1.00

................................................AGGTAGAAAGAACAGGTCTCG.....................................................................................................................................................................................

2.00

0.00

1.00

................................................AGGTAGAAAGAACAGGTCGTG.....................................................................................................................................................................................

2.00

0.00

1.00

........TTGGAGTATTTGGAGAGGCAGGT...........................................................................................................................................................................................................................

1.00

0.00

1.00

...............................................CAGGTAGAAAGAACAGGTACTT.....................................................................................................................................................................................

1.00

0.00

1.00

.....................AGAGGCAGCTGGATGGATA..................................................................................................................................................................................................................

1.00

0.00

1.00

................................................AGGTAGAAAGAACAGGGCTT......................................................................................................................................................................................

1.00

0.00

1.00

................................................AGGTAGAAAGAACAGGTACT......................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................................................................TTTTTTTTTAAAATACTGAT.............

1.00

0.00

1.00

.......................AGGCAGCTGGATGAGCCG.................................................................................................................................................................................................................

1.00

................................................AGGTAGAAAGAACAGGTCTAA.....................................................................................................................................................................................

1.00

0.00

1.00

................................................AGGTAGAAAGAACAGGTCTA......................................................................................................................................................................................

1.00

0.00

1.00

.............................................................................................................................................................TTTGTACCGTGAACCTCCTTG........................................................................

1.00

................................................AGGTAGAAAGAACAGGTC........................................................................................................................................................................................

1.00

0.00

1.00

...............ATTTGGAGAGGCAGCTGGATGAGCCGGG...............................................................................................................................................................................................................

1.00

0.00

1.00

......................................................................ATCTGAGCGCTGTGGCCTGTTTCCTCCTG.......................................................................................................................................................

1.00

...................................................................................................................................................................CCGTGAACCTCCTTGGCAGTA..................................................................

1.00

0.00

1.00

...............................................................................................................................................TTCTTCATCTCTTTTTTTACC......................................................................................

1.00

0.00

1.00

................................................AGGTAGAAAGAACAGGTTTT......................................................................................................................................................................................

1.00

0.00

1.00

.................................................GGTAGAAAGAACAGGTCTTG.....................................................................................................................................................................................

1.00

0.00

1.00

..............................................GCAGGTAGAAAGAACAGG..........................................................................................................................................................................................

1.00

................................................AGGTAGAAAGAACAGGTTTTG.....................................................................................................................................................................................

1.00

0.00

1.00

..................................................................................TGGCCTGTTTCCTCCTGAAATCCCAGATCAGA........................................................................................................................................

1.00

................................................AGGTAGAAAGAACAGGTCGTT.....................................................................................................................................................................................

1.00

0.00

1.00

................................................AGGTAGAAAGAACAGGTCGTA.....................................................................................................................................................................................

1.00

0.00

1.00

................................................AGGTAGAAAGAACAGGTATTA.....................................................................................................................................................................................

1.00

0.00

1.00

................................................................................................................................................................................................TCCCTGGACTCCTTCTGACG......................................

1.00

0.00

1.00

................................................AGGTAGAAAGAACAGGTTTG......................................................................................................................................................................................

1.00

0.00

1.00

..................................................GTAGAAAGAACAGGTTTAGT....................................................................................................................................................................................

0.50

.............................................................................................................................................................................CCTTGGCAGTAAGGTGAAGTCCCT.....................................................

0.50

........TTGGAGTATTTGGAGAGGCAGCT...........................................................................................................................................................................................................................

0.50

..............................................GCAGGTAGAAAGAACAGGTTTA......................................................................................................................................................................................

0.50

...............ATTTGGAGAGGCAGCTGGAT.......................................................................................................................................................................................................................

0.50

......TATTGGAGTATTTGGAGAGGC...............................................................................................................................................................................................................................

0.50

................................................AGGTAGAAAGAACAGGTT........................................................................................................................................................................................

0.50

.......ATTGGAGTATTTGGAGAGG................................................................................................................................................................................................................................

0.50

..................................................GTAGAAAGAACAGGTT........................................................................................................................................................................................

0.25

Size

Perfect hit

Total Norm

Perfect Norm

GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)

TAX577739(Rovira)
total RNA. (breast)

GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)

GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)

GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)

TAX577744(Rovira)
total RNA. (breast)

GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)

SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)

GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)

TAX577453(Rovira)
total RNA. (breast)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)

SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)

SRR040036(GSM532921)
G243N. (cervix)

SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)

SRR189782

TAX577740(Rovira)
total RNA. (breast)

SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)

GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)

TAX577742(Rovira)
total RNA. (breast)

SRR037941(GSM510479)
293DroshaTN. (cell line)

TAX577579(Rovira)
total RNA. (breast)

SRR060168(GSM565978)
5-8F_nucleus. (cell line)

GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)

TAX577745(Rovira)
total RNA. (breast)

GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)

TAX577743(Rovira)
total RNA. (breast)

SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)

SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)

GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)

TAX577746(Rovira)
total RNA. (breast)

DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)

SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)

SRR037937(GSM510475)
293cand2. (cell line)

SRR015358(GSM380323)
Nàøve B Cell (Naive39). (B cell)

SRR189785

SRR038855(GSM458538)
D10. (cell line)

SRR040031(GSM532916)
G013T. (cervix)

SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)

SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)

SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)

TAX577741(Rovira)
total RNA. (breast)

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR040038(GSM532923)
G531N. (cervix)

DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR038860(GSM458543)
MM426. (cell line)

SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)

SRR033728(GSM497073)
MALT (MALT413). (B cell)

SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)

SRR040035(GSM532920)
G001T. (cervix)

SRR015361(GSM380326)
Memory B cells (MM55). (B cell)

SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)

SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)

SRR033731(GSM497076)
h929 Cell line (h929). (B cell)

SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)

SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)

1.00

0.00

1.00

0.00

1.00

...........................................................................................................................................GGAGTTCTTCATCTCTACT............................................................................................

1.00

0.00

1.00

0.00

1.00

............................................................................................CCTCCTGAAATCCCAGGCAG..........................................................................................................................................

1.00

0.00

1.00

..................TGGAGAGGCAGCTGGTCG......................................................................................................................................................................................................................

1.00

0.00

1.00

0.00

1.00

............................................................................................................................................GAGTTCTTCATCTCTAAG............................................................................................

1.00

0.00

1.00

............................................................................................................................................GAGTTCTTCATCTCTTACC...........................................................................................

1.00

0.00

1.00

.............................................................................................................................................AAAGAGATGAAGAACT.............................................................................................

0.12