ID: uc003nks.1_intron_3_0_chr6_28217613_r.5p
GENE: ZKSCAN4(1)
chr6:28219136-28219385-


(1)
AGO2.ip
(10)
B-CELL
(12)
BRAIN
(10)
BREAST
(16)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(7)
LIVER
(4)
OTHER
(4)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
TGGTGCTATTGGAGTATTTGGAGAGGCAGCTGGATGAGCCGGCGCCGCAGGTAGAAAGAACAGGTTTAGTATCTGAGCGCTGTGGTCTGTTTCCTCCTGAAATCCCAGATCGGAGCGAGGGGCATTCCTTTAAGGTCCAGGAGTTCTTCATCTCTTTTTGTACTGTGAACCTCCTTGGCAGTAAGGTGAAGTCCCTGGACTCCTTCTCAGAATTATATTTTTAAATATATAAAGAAACTATAAAGGATTA
..............................................((............(((((.....)))))..((((.(((((((((((.....))))...))))))).))))....))...............................................................................................................................
............................................45..............................................................................125...........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577739(Rovira)
total RNA. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189784GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782TAX577744(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577742(Rovira)
total RNA. (breast)
SRR037941(GSM510479)
293DroshaTN. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
TAX577745(Rovira)
total RNA. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR189783SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR038855(GSM458538)
D10. (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040038(GSM532923)
G531N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038860(GSM458543)
MM426. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
................................................AGGTAGAAAGAACAGGTCTTG.....................................................................................................................................................................................2166.000.00-1.005.004.003.003.00-4.00-1.002.001.003.00-2.001.00-1.002.00-1.001.002.001.001.001.002.002.002.002.001.002.002.002.00-1.00-1.00-----1.001.001.00-1.001.00-------1.00-1.00-1.001.00-------
................................................AGGTAGAAAGAACAGGTCTT......................................................................................................................................................................................204.000.00-1.00-----------1.00----------------------------1.00----------------1.00---------
................................................AGGTAGAAAGAACAGGTATTG.....................................................................................................................................................................................213.000.00-------------1.00-1.00-----------------------1.00-----------------------------
................................................AGGTAGAAAGAACAGGTCTTA.....................................................................................................................................................................................213.000.00---------2.00------------------------------1.00----------------------------
................................................AGGTAGAAAGAACAGGTGTTG.....................................................................................................................................................................................213.000.00-1.00---------1.00-1.00-------------------------------------------------------
................................................AGGTAGAAAGAACAGGTCCTG.....................................................................................................................................................................................212.000.00---------1.00--------------1.00--------------------------------------------
...............................................CAGGTAGAAAGAACAGGTCTTG.....................................................................................................................................................................................222.000.00----------1.00------------1.00---------------------------------------------
................................................AGGTAGAAAGAACAGGTCTCG.....................................................................................................................................................................................212.000.00-1.00-------------------1.00-----------------------------------------------
................................................AGGTAGAAAGAACAGGTCGTG.....................................................................................................................................................................................212.000.00---1.001.00----------------------------------------------------------------
.....................................................................................................ATCCCAGATCGGAGCGAGGG.................................................................................................................................2011.001.00--------------------------------------------------------------1.00------
........TTGGAGTATTTGGAGAGGCAGGT...........................................................................................................................................................................................................................231.000.00---------------------------------------------------------1.00-----------
...............................................CAGGTAGAAAGAACAGGTACTT.....................................................................................................................................................................................221.000.00---------------1.00-----------------------------------------------------
.....................AGAGGCAGCTGGATGGATA..................................................................................................................................................................................................................191.000.00-----------------1.00---------------------------------------------------
................................................AGGTAGAAAGAACAGGGCTT......................................................................................................................................................................................201.000.00--------------------1.00------------------------------------------------
................................................AGGTAGAAAGAACAGGTACT......................................................................................................................................................................................201.000.00--------------1.00------------------------------------------------------
.......................AGGCAGCTGGATGAGCCG.................................................................................................................................................................................................................1821.001.00------------------------------------1.00--------------------------------
................................................AGGTAGAAAGAACAGGTCTAA.....................................................................................................................................................................................211.000.00------------------------------1.00--------------------------------------
................................................AGGTAGAAAGAACAGGTCTA......................................................................................................................................................................................201.000.00-------------------------------------------------------1.00-------------
................................................AGGTAGAAAGAACAGGTC........................................................................................................................................................................................181.000.00----------------------------------------------1.00----------------------
...............ATTTGGAGAGGCAGCTGGATGAGCCGGG...............................................................................................................................................................................................................281.000.00----------------1.00----------------------------------------------------
..................................................................................................................................................................................................................................ATATAAAGAAACTATTACG.....191.000.00--------1.00------------------------------------------------------------
...........................................................................AGCGCTGTGGTCTGTTTCCTCCTGA......................................................................................................................................................2511.001.00---------------------------------------------------1.00-----------------
................................................AGGTAGAAAGAACAGGTTTT......................................................................................................................................................................................201.000.00-----------1.00---------------------------------------------------------
.................................................GGTAGAAAGAACAGGTCTTG.....................................................................................................................................................................................201.000.00----1.00----------------------------------------------------------------
..............................................GCAGGTAGAAAGAACAGG..........................................................................................................................................................................................1831.001.00----------------------------------1.00----------------------------------
................................................AGGTAGAAAGAACAGGTTTTG.....................................................................................................................................................................................211.000.00-1.00-------------------------------------------------------------------
................................................AGGTAGAAAGAACAGGTCGTT.....................................................................................................................................................................................211.000.00-----1.00---------------------------------------------------------------
................................................AGGTAGAAAGAACAGGTCGTA.....................................................................................................................................................................................211.000.00----------1.00----------------------------------------------------------
.........................................................................................................................................................CTTTTTGTACTGTGAACCTG.............................................................................201.000.00----------------------------------------------------1.00----------------
................................................AGGTAGAAAGAACAGGTATTA.....................................................................................................................................................................................211.000.00-------------------------------------------------1.00-------------------
...............................................................................................................................................................................................TCCCTGGACTCCTTCTGACG.......................................201.000.00--------1.00------------------------------------------------------------
................................................AGGTAGAAAGAACAGGTTTG......................................................................................................................................................................................201.000.00-------------------------1.00-------------------------------------------
..............................................................................................................................................................TGTACTGTGAACCTCCTG..........................................................................181.000.00-----------------------------------------1.00---------------------------
................................................................TTTAGTATCTGAGCGCTGTGGT....................................................................................................................................................................2211.001.00--------------------------------------------------1.00------------------
..................................................GTAGAAAGAACAGGTTTAGT....................................................................................................................................................................................2020.500.50------------------------------------------------------0.50--------------
............................................................................................................................................................................CCTTGGCAGTAAGGTGAAGTCCCT......................................................2420.500.50----------------0.50----------------------------------------------------
........TTGGAGTATTTGGAGAGGCAGCT...........................................................................................................................................................................................................................2320.500.50---------------------------------------------------------------0.50-----
..............................................GCAGGTAGAAAGAACAGGTTTA......................................................................................................................................................................................2220.500.50-0.50-------------------------------------------------------------------
...............ATTTGGAGAGGCAGCTGGAT.......................................................................................................................................................................................................................2020.500.50------------------------------------------------------0.50--------------
......TATTGGAGTATTTGGAGAGGC...............................................................................................................................................................................................................................2120.500.50----------------------------------------------------------------0.50----
................................................AGGTAGAAAGAACAGGTT........................................................................................................................................................................................1820.500.50-----------------------------------------------------------------0.50---
.......ATTGGAGTATTTGGAGAGG................................................................................................................................................................................................................................1920.500.50-----0.50---------------------------------------------------------------
..................................................GTAGAAAGAACAGGTT........................................................................................................................................................................................1640.250.25------------------------------------------------------------------0.25--

Antisense strand
TGGTGCTATTGGAGTATTTGGAGAGGCAGCTGGATGAGCCGGCGCCGCAGGTAGAAAGAACAGGTTTAGTATCTGAGCGCTGTGGTCTGTTTCCTCCTGAAATCCCAGATCGGAGCGAGGGGCATTCCTTTAAGGTCCAGGAGTTCTTCATCTCTTTTTGTACTGTGAACCTCCTTGGCAGTAAGGTGAAGTCCCTGGACTCCTTCTCAGAATTATATTTTTAAATATATAAAGAAACTATAAAGGATTA
..............................................((............(((((.....)))))..((((.(((((((((((.....))))...))))))).))))....))...............................................................................................................................
............................................45..............................................................................125...........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577739(Rovira)
total RNA. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189784GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782TAX577744(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577742(Rovira)
total RNA. (breast)
SRR037941(GSM510479)
293DroshaTN. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
TAX577745(Rovira)
total RNA. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR189783SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR038855(GSM458538)
D10. (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040038(GSM532923)
G531N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038860(GSM458543)
MM426. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
.....................................................................................................................................................................................................................................TAAAGAAACTATAAAGGCTTA 215.000.004.00-------1.00------------------------------------------------------------
.....................................................................................................................................................................................................................................TAAAGAAACTATAAAGCTTA. 203.000.00------3.00--------------------------------------------------------------
.....................................................................................................................................................................................................................................TAAAGAAACTATAAACTTC.. 192.000.002.00--------------------------------------------------------------------
............................................................................................................ATCGGAGCGAGGGGCTCGG........................................................................................................................... 191.000.00------1.00--------------------------------------------------------------
...........................................................................................................................................GGAGTTCTTCATCTCTACT............................................................................................ 191.000.00-------------------1.00-------------------------------------------------
............................................................................................CCTCCTGAAATCCCAGGCAG.......................................................................................................................................... 201.000.00----------------1.00----------------------------------------------------
..................TGGAGAGGCAGCTGGTCG...................................................................................................................................................................................................................... 181.000.00--------1.00------------------------------------------------------------
.....................................................................................................................................................................................................................................TAAAGAAACTATAAAGGC... 181.000.00--------------------------------------1.00------------------------------
............................................................................................................................................GAGTTCTTCATCTCTAAG............................................................................................ 181.000.00-----------------------------------------------------1.00---------------
............................................................................................................................................GAGTTCTTCATCTCTTACC........................................................................................... 191.000.00-------------------1.00-------------------------------------------------
.....................................................................................................................................AAGAACTCCTGGACC...................................................................................................... 1560.170.17-------------------------------------------------------------------0.17-
.............................................................................................................................................AAAGAGATGAAGAACT............................................................................................. 1680.120.12--------------------------------------------------------------------0.12