ID: uc003nhl.1_intron_0_0_chr6_26281816_r.5p
GENE: HIST1H4H(1)
chr6:26285062-26285311-


(16)
B-CELL 		(7)
BREAST 		(30)
CELL-LINE 		(1)
HEART 		(4)
HELA 		(1)
OTHER 		(7)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TCCAGATTTTTGCTGAGAAGTAGTTACTGTGCACATGTGTAGATTTGCAGGTAACGTTTAATTACTCGTGCTTAATCTCGCATGTTTAGGATTTGGGCATAAAGTACTTAAAGCCACTGTTTTCTGCTTGAGGGAAGTTGGTATGTTGAATATGTTTAGCTTTCTTGTGGCATTTTAACACTAGATATCAGTGAGTAAGCTGGATTGTGACAGTTTATAATTCCCGTGGGCCTTCCTCCTTCAGTTTAAG
...............................................................................((((((((((..((((((.........))))))((((((.(((((.....))))).))).)))...))))))))))...............................................................................................
..............................................................................79.............................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR189782SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029130(GSM416759)
DLD2. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
........................................................................................................................................GTTGGTATGTTGAATATG................................................................................................18118.0018.00-18.00------------------------------------------------------------------
..............GAGAAGTAGTTACTGTG...........................................................................................................................................................................................................................17110.0010.00-10.00------------------------------------------------------------------
................GAAGTAGTTACTGTGTCT........................................................................................................................................................................................................................188.000.00--------7.00-----1.00-----------------------------------------------------
...................................................................................GTTTAGGATTTGGGCATAA....................................................................................................................................................1917.007.00----3.00--------------3.00--------------------1.00---------------------------
.................AAGTAGTTACTGTGCACATG.....................................................................................................................................................................................................................2016.006.00--4.001.00---------------------------------1.00------------------------------
...........GCTGAGAAGTAGTTACTGTGCA.........................................................................................................................................................................................................................2216.006.00----------------1.00-3.00--------1.00--1.00-------------------------------------
................................................................................................................................................................................................GAGTAAGCTGGATTGTG.........................................1716.006.00---------6.00----------------------------------------------------------
.................................CATGTGTAGATTTGCAG........................................................................................................................................................................................................1715.005.00---4.00-1.00--------------------------------------------------------------
...............................................................................................................................TTGAGGGAAGTTGGTATGT........................................................................................................1915.005.00----------5.00---------------------------------------------------------
..................................ATGTGTAGATTTGCAGG.......................................................................................................................................................................................................1714.004.001.00-2.00---1.00-------------------------------------------------------------
................................ACATGTGTAGATTTGCAG........................................................................................................................................................................................................1814.004.00-----1.00------------------1.00------------------------1.00--1.00---------------
...........GCTGAGAAGTAGTTACTGTG...........................................................................................................................................................................................................................2014.004.003.00------------------------------1.00------------------------------------
...............AGAAGTAGTTACTGTGTCT........................................................................................................................................................................................................................1953.200.60--------0.60-----1.20--------------------0.20-0.40---------------------------0.40-0.40
.........................ACTGTGCACATGTGTAGATTTGCAGG.......................................................................................................................................................................................................2613.003.002.00--1.00----------------------------------------------------------------
....................................GTGTAGATTTGCAGGTAACGT.................................................................................................................................................................................................2113.003.00-----------------2.00--------------------------1.00-----------------------
....................................GTGTAGATTTGCAGGTAACGTTT...............................................................................................................................................................................................2313.003.00----2.00-------------------------------------------------------1.00-------
......................GTTACTGTGCACATGTGTAGA...............................................................................................................................................................................................................2113.003.003.00-------------------------------------------------------------------
..................................ATGTGTAGATTTGCAGGTAACG..................................................................................................................................................................................................2213.003.00--3.00-----------------------------------------------------------------
.............................TGCACATGTGTAGATTTGCAGG.......................................................................................................................................................................................................2213.003.00-----------1.00---------1.00-----------------------------------------1.00----
.................................................................................................................................................................................................AGTAAGCTGGATTGTGACAG.....................................2013.003.003.00-------------------------------------------------------------------
............CTGAGAAGTAGTTACTGTGCA.........................................................................................................................................................................................................................2112.002.00--1.00---------------------------1.00-------------------------------------
..........................CTGTGCACATGTGTAGATTTGCAGGT......................................................................................................................................................................................................2612.002.00--2.00-----------------------------------------------------------------
..................................ATGTGTAGATTTGCAG........................................................................................................................................................................................................1632.002.00---0.67--0.33----1.00--------------------------------------------------------
..............GAGAAGTAGTTACTGTGCACATGTG...................................................................................................................................................................................................................2512.002.001.00---1.00---------------------------------------------------------------
............CTGAGAAGTAGTTACTGTGCACAT......................................................................................................................................................................................................................2412.002.00-------1.00---------------------------------------------------1.00--------
..........TGCTGAGAAGTAGTTACTGTGCACATG.....................................................................................................................................................................................................................2712.002.002.00-------------------------------------------------------------------
...............AGAAGTAGTTACTGTGCACATGTG...................................................................................................................................................................................................................2412.002.00----------------1.00------------------------------------1.00--------------
...........GCTGAGAAGTAGTTACTGTGCACATG.....................................................................................................................................................................................................................2612.002.00-----1.00--------------------------------1.00-----------------------------
...............................CACATGTGTAGATTTGCAGGTAACG..................................................................................................................................................................................................2512.002.00-------2.00------------------------------------------------------------
.....................................................................................................AAGTACTTAAAGCCACTG...................................................................................................................................1812.002.00---2.00----------------------------------------------------------------
...........GCTGAGAAGTAGTTACTGTGC..........................................................................................................................................................................................................................2112.002.00-----1.00---------------------------------------------1.00----------------
............CTGAGAAGTAGTTACTGTGCACATG.....................................................................................................................................................................................................................2512.002.00-------1.00---1.00--------------------------------------------------------
...............................CACATGTGTAGATTTGCAGGT......................................................................................................................................................................................................2112.002.00--2.00-----------------------------------------------------------------
.......................TTACTGTGCACATGTGTAGATTTGCAG........................................................................................................................................................................................................2712.002.00-----2.00--------------------------------------------------------------
.............TGAGAAGTAGTTACTGTGCA.........................................................................................................................................................................................................................2012.002.00-----------------------2.00--------------------------------------------
................................................................................................................................................................................................GAGTAAGCTGGATTGTGA........................................1812.002.00----2.00---------------------------------------------------------------
............................GTGCACATGTGTAGATTTGCAGG.......................................................................................................................................................................................................2312.002.001.00-----------------------------------------------------1.00-------------
.......................................................................................................................................................................................................CTGGATTGTGACAGTTTA.................................1812.002.00----1.00-------1.00-------------------------------------------------------
............................................................................................................................................................................TTTTAACACTAGATATCAGTGAGTA.....................................................2512.002.00---------------------------------2.00----------------------------------
................................................................................CATGTTTAGGATTTGGGCAT......................................................................................................................................................2012.002.00---------------------1.00--1.00-------------------------------------------
......................GTTACTGTGCACATGTGTAGATTTGCAGGTAACGTTTAATTACTCGTGCTTAATCTCGC.........................................................................................................................................................................5912.002.00-------------------------2.00------------------------------------------
...............................................................................................................................................................................................TGAGTAAGCTGGATTGTGACAGTT...................................2412.002.002.00-------------------------------------------------------------------
..................................................................................................................................AGGGAAGTTGGTATGTTGAATATGT...............................................................................................2512.002.002.00-------------------------------------------------------------------
..........................................................................................................................TCTGCTTGAGGGAAGTTGGTA...........................................................................................................2112.002.001.00-------------------------------1.00-----------------------------------
.......................................................................................................................................................................................................CTGGATTGTGACAGTTTATA...............................2012.002.00----1.00-------1.00-------------------------------------------------------
......................................GTAGATTTGCAGGTAACGTT................................................................................................................................................................................................2012.002.00--2.00-----------------------------------------------------------------
...............AGAAGTAGTTACTGTGTC.........................................................................................................................................................................................................................1851.400.60--------------0.40-------------------0.600.40--------------------------------
...............AGAAGTAGTTACTGTGTCTT.......................................................................................................................................................................................................................2051.200.60--------0.20-----0.80--------------------------------------------------0.20--
...............................................................................................................................................................................................TGAGTAAGCTGGATTGTGACAG.....................................2211.001.00-------------------------------------------1.00------------------------
..................................................................................TGTTTAGGATTTGGGCATAA....................................................................................................................................................2011.001.00-----1.00--------------------------------------------------------------
..................................ATGTGTAGATTTGCAGGTAACGT.................................................................................................................................................................................................2311.001.001.00-------------------------------------------------------------------
.........................ACTGTGCACATGTGTAGATTTGC..........................................................................................................................................................................................................2311.001.00------1.00-------------------------------------------------------------
..........................................................................ATCTCGCATGTTTAGGATTTGGG.........................................................................................................................................................2311.001.00-----------1.00--------------------------------------------------------
.............................................................................................................................GCTTGAGGGAAGTTGGTATGTTGA.....................................................................................................2411.001.00------1.00-------------------------------------------------------------
.....................................TGTAGATTTGCAGGTAACGTT................................................................................................................................................................................................2111.001.00----------------------1.00---------------------------------------------
.............................................................................................................................................................................................AGTGAGTAAGCTGGATTGT..........................................1911.001.00---------------------------------------------------------1.00----------
........................TACTGTGCACATGTGTAGAT..............................................................................................................................................................................................................2011.001.00----------------------------1.00---------------------------------------
...................................TGTGTAGATTTGCAGGTAACGTTT...............................................................................................................................................................................................2411.001.00-----------------------------------1.00--------------------------------
........TTTGCTGAGAAGTAGTTACTGTGC..........................................................................................................................................................................................................................2411.001.00------------1.00-------------------------------------------------------
............CTGAGAAGTAGTTACTGTTCA.........................................................................................................................................................................................................................211.000.00-----------------------------------------------1.00--------------------
......................................................CGTTTAATTACTCGTGCTTA................................................................................................................................................................................2011.001.00--------------------------1.00-----------------------------------------
....................................................................................................................................................................................................AAGCTGGATTGTGACAGTTTATAAT.............................2511.001.00-----------------------------1.00--------------------------------------
.................................................................................................................................................................TTCTTGTGGCATTTTAACACTAG..................................................................2311.001.00-------------1.00------------------------------------------------------
.....................................................................................................................................GAAGTTGGTATGTTGAATA..................................................................................................1911.001.00-----------------1.00--------------------------------------------------
.....................AGTTACTGTGCACATGTGTAGA...............................................................................................................................................................................................................2211.001.00---------------------------------------1.00----------------------------
.................................................................................................................CCACTGTTTTCTGCTTGAGGGAAGTTGG.............................................................................................................2811.001.00----------------------------------------------1.00---------------------
...............................................................................GCATGTTTAGGATTTGGG.........................................................................................................................................................1811.001.00-------------------------------------------------------------1.00------
................................ACATGTGTAGATTTGCAGGTAACGT.................................................................................................................................................................................................2511.001.00------1.00-------------------------------------------------------------
.................................................................................................................................................................................................................ACAGTTTATAATTCCCGTGGG....................2111.001.00-----------------------------------------1.00--------------------------
.................................................................................ATGTTTAGGATTTGGGCATA.....................................................................................................................................................2011.001.00--------------------1.00-----------------------------------------------
.............................................................................TCGCATGTTTAGGATTTGG..........................................................................................................................................................1911.001.00--1.00-----------------------------------------------------------------
..................................ATGTGTAGATTTGCAGGTAACGTTTAA.............................................................................................................................................................................................2711.001.00----------------------1.00---------------------------------------------
...........GCTGAGAAGTAGTTACTGCG...........................................................................................................................................................................................................................201.000.001.00-------------------------------------------------------------------
.....ATTTTTGCTGAGAAGTAG...................................................................................................................................................................................................................................1811.001.00--1.00-----------------------------------------------------------------
...............................................................................................................................................................................................TGAGTAAGCTGGATTGTGACA......................................2111.001.00-------1.00------------------------------------------------------------
...........GCTGAGAAGTAGTTACTGTCCA.........................................................................................................................................................................................................................2211.001.00--------------------------------1.00-----------------------------------
.................................CATGTGTAGATTTGCAGGTAACGT.................................................................................................................................................................................................2411.001.001.00-------------------------------------------------------------------
..............................................................................................................................CTTGAGGGAAGTTGGTATGTTGA.....................................................................................................2311.001.00----------------1.00---------------------------------------------------
...................GTAGTTACTGTGCACATGTG...................................................................................................................................................................................................................2011.001.00------1.00-------------------------------------------------------------
.............................................................................................................................................................................................AGTGAGTAAGCTGGATTGTGCCAG.....................................241.000.001.00-------------------------------------------------------------------
......................................................................................TAGGATTTGGGCATAAAGTACTTAAAG.........................................................................................................................................2711.001.001.00-------------------------------------------------------------------
.................................................................................ATGTTTAGGATTTGGGCAT......................................................................................................................................................1911.001.00--------------------------------------------------------------1.00-----
......................GTTACTGTGCACATGTGGAGA...............................................................................................................................................................................................................211.000.001.00-------------------------------------------------------------------
..............................GCACATGTGTAGATTTGCAGGTAACGTTTAATTACTCGTGCTTAATCTCGCATGTTTAGGATTTGGG.........................................................................................................................................................6711.001.00------------------------------------------------1.00-------------------
.................................................................................................................................GAGGGAAGTTGGTATGTTGA.....................................................................................................2011.001.00------1.00-------------------------------------------------------------
...........GCTGAGAAGTAGTTACTGTGCACATGTGTAGAT..............................................................................................................................................................................................................3311.001.00---------------1.00----------------------------------------------------
.....................................................................................................................................................................TGTGGCATTTTAACACTTTTG................................................................211.000.00-------------1.00------------------------------------------------------
......................GTTACTGTGCACATGTGTAGATTTGCAAG.......................................................................................................................................................................................................291.000.00------------------------------------1.00-------------------------------
.........................................................................AATCTCGCATGTTTAGGATTTGGGC........................................................................................................................................................2511.001.00-----------------------------1.00--------------------------------------
.............TGAGAAGTAGTTACTGTGCAC........................................................................................................................................................................................................................2111.001.00-------1.00------------------------------------------------------------
........TTTGCTGAGAAGTAGTTACTGTGCACATGTGTAGAT..............................................................................................................................................................................................................3611.001.00---------------1.00----------------------------------------------------
...........GCTGAGAAGTAGTTACTGTGCACATGTGTAGATTTGCAG........................................................................................................................................................................................................3911.001.00---------------1.00----------------------------------------------------
.............................................................................................................................GCTTGAGGGAAGTTGGTATGT........................................................................................................2111.001.00-------------------------------------------------------1.00------------
..........................................................................ATCTCGCATGTTTAGGATTTGGGCATAA....................................................................................................................................................2811.001.00----------------------------------------------------------------1.00---
.............TGAGAAGTAGTTACTGTGCACAT......................................................................................................................................................................................................................2311.001.00---------------------------------------------1.00----------------------
.............................TGCACATGTGTAGATTTGCAGGA......................................................................................................................................................................................................2311.003.00---------------------1.00----------------------------------------------
...........................TGTGCACATGTGTAGATTTGCAGGT......................................................................................................................................................................................................2511.001.00-----------1.00--------------------------------------------------------
...........GCTGAGAAGTAGTTACTGT............................................................................................................................................................................................................................1911.001.00----------------------------------------------------------1.00---------
..........TGCTGAGAAGTAGTTACTGTGCA.........................................................................................................................................................................................................................2311.001.00----------------------1.00---------------------------------------------
..............................................................................................................................................................................................GTGAGTAAGCTGGATT............................................1611.001.00--------------------------1.00-----------------------------------------
.................AAGTAGTTACTGTGCACATA.....................................................................................................................................................................................................................201.000.00--1.00-----------------------------------------------------------------
.............TGAGAAGTAGTTACTGCG...........................................................................................................................................................................................................................181.000.00-----1.00--------------------------------------------------------------
...............................................................................................................................................................................................TGAGTAAGCTGGATTGTGAC.......................................2011.001.00--------------------1.00-----------------------------------------------
............CTGAGAAGTAGTTACTGTG...........................................................................................................................................................................................................................1911.001.00-------------------------------1.00------------------------------------
.......................................................................................AGGATTTGGGCATAAAGTACTT.............................................................................................................................................2211.001.00--------------------1.00-----------------------------------------------
...............AGAAGTAGTTACTGTGCACAT......................................................................................................................................................................................................................2111.001.00-----1.00--------------------------------------------------------------
.....................................................................................................................TGTTTTCTGCTTGAGGGAAGTTGG.............................................................................................................2411.001.001.00-------------------------------------------------------------------
...................................TGTGTAGATTTGCAGGTAACGTTA...............................................................................................................................................................................................241.000.00---------------------------1.00----------------------------------------
........................................................................................................................................................................................................TGGATTGTGACAGTTTATAATTCCCG........................2611.001.00-------1.00------------------------------------------------------------
...................................................................................................................ACTGTTTTCTGCTTGAGGGAAGTTGGT............................................................................................................2711.001.00------1.00-------------------------------------------------------------
.............................................................................TCGCATGTTTAGGATTTGGGC........................................................................................................................................................2111.001.00------------------------------------------1.00-------------------------
.................................................................................ATGTTTAGGATTTGGGCATAAAGTA................................................................................................................................................2511.001.001.00-------------------------------------------------------------------
..........................................................................................................................................TGGTATGTTGAATATTAG..............................................................................................181.000.00-------------1.00------------------------------------------------------
.......................................................................................AGGATTTGGGCATAAAGT.................................................................................................................................................1811.001.00---1.00----------------------------------------------------------------
.....................................TGTAGATTTGCAGGTAACGTTA...............................................................................................................................................................................................2211.001.00------------1.00-------------------------------------------------------
......................GTTACTGTGCACATGTGTAG................................................................................................................................................................................................................2011.001.00---1.00----------------------------------------------------------------
............................GTGCACATGTGTAGATTTGCA.........................................................................................................................................................................................................2111.001.00------------1.00-------------------------------------------------------
....................................GTGTAGATTTGCAGG.......................................................................................................................................................................................................1511.001.00------1.00-------------------------------------------------------------
.................................................................................................................................GAGGGAAGTTGGTATGTTGAAT...................................................................................................2211.001.00--------------------------------------------------1.00-----------------
......................................GTAGATTTGCAGGTAACGT.................................................................................................................................................................................................1911.001.00----------------------------1.00---------------------------------------
..................................................................................TGTTTAGGATTTGGGCATAAAG..................................................................................................................................................2211.001.00---1.00----------------------------------------------------------------
...............................CACATGTGTAGATTTGCAGGTAACGT.................................................................................................................................................................................................2611.001.00-------1.00------------------------------------------------------------
...............AGAAGTAGTTACTGTG...........................................................................................................................................................................................................................1650.600.60----------------------------------0.60---------------------------------
.................................................................................ATGTTTAGGATTTGGGC........................................................................................................................................................1720.500.50------------------------------------------------------------------0.50-
....................................................................................................................................GGAAGTTGGTATGTTGAA....................................................................................................1820.500.50----0.50---------------------------------------------------------------
..................................................................................TGTTTAGGATTTGGGC........................................................................................................................................................1620.500.50---0.50----------------------------------------------------------------
......................................................................................................................................AAGTTGGTATGTTGAAT...................................................................................................1720.500.50-------------------------0.50------------------------------------------
.............................................................................................................................GCTTGAGGGAAGTTGGT............................................................................................................1720.500.50------------------------0.50-------------------------------------------
..................................................................................................................................................................................................GTAAGCTGGATTGTGA........................................1620.500.50------------------------------------0.50-------------------------------
...............AGAAGTAGTTACTGTGT..........................................................................................................................................................................................................................1750.400.60----------------------------------0.40---------------------------------
........................................................................................................................................................................................................TGGATTGTGACAGTT...................................1570.290.29---0.29----------------------------------------------------------------
...................................TGTGTAGATTTGCAG........................................................................................................................................................................................................1570.290.29------0.14-------------------------------0.14-----------------------------
.....................................................................................................................................GAAGTTGGTATGTTG......................................................................................................1550.200.20------0.20-------------------------------------------------------------

Antisense strand
TCCAGATTTTTGCTGAGAAGTAGTTACTGTGCACATGTGTAGATTTGCAGGTAACGTTTAATTACTCGTGCTTAATCTCGCATGTTTAGGATTTGGGCATAAAGTACTTAAAGCCACTGTTTTCTGCTTGAGGGAAGTTGGTATGTTGAATATGTTTAGCTTTCTTGTGGCATTTTAACACTAGATATCAGTGAGTAAGCTGGATTGTGACAGTTTATAATTCCCGTGGGCCTTCCTCCTTCAGTTTAAG
...............................................................................((((((((((..((((((.........))))))((((((.(((((.....))))).))).)))...))))))))))...............................................................................................
..............................................................................79.............................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR189782SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029130(GSM416759)
DLD2. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
..........................................................................................................CTTAAAGCCACTGTTTTCA............................................................................................................................. 192.000.00--2.00-----------------------------------------------------------------
.......................................................................TTAATCTCGCATGTTACTT................................................................................................................................................................ 191.000.00-------------1.00------------------------------------------------------
........................................................................................................................TACCAACTTCCCTCAAGCAGAAA........................................................................................................... 2311.001.00--------------------------------------------------------1.00-----------
....................................................................................................................................................................................................................................AACTGAAGGAGGAAGGCC.... 1820.500.50-----------------------0.50--------------------------------------------