ID: uc003nel.2_intron_2_0_chr6_24714669_r.3p
GENE: (2)
chr6:24714619-24714868-


(2)
AGO2.ip 		(1)
AGO3.ip 		(3)
B-CELL 		(5)
BRAIN 		(4)
BREAST 		(22)
CELL-LINE 		(1)
FIBROBLAST 		(3)
HEART 		(5)
HELA 		(1)
KIDNEY 		(9)
LIVER 		(2)
OTHER 		(2)
RRP40.ip 		(17)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
CTGTCTCCAAAAATAAAAAATTACATCATGAGCTATTCAGATTATAAACTATTATGTTTACTTCCTAAGATATAAAATGATATATGGTAGATCTTTTGTACTTATAAAATGTTTTTATAGGGGAACCCTATAATTTGTGACATGGCTTGATGTAGCTGTTTCTTTAAAAGTAAACTTTTTTTTTTTTAATCATTTTATAGGATGTAATTGGCTGTACTCAGGAGATGGATTTCATTCTTTGGCCTCGGAA
.............................................................................................................................................((((((......))))))......(((((....))))).......................................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343336SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR343337DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.................................................................................................................................................................................TTTTTTTTTTAATCATTTTCAG...................................................229.000.00-6.00-1.00--2.00---------------------------------------------------------------------
.............................................................................................................................................................................................................AATTGGCTGTACTCAGGAGATG.......................2216.006.002.00-------1.00-------------------1.00----------------1.00----1.00-------------------------
.............................................................................................................................................................................................................AATTGGCTGTACTCAGGAGATGGATTT..................2716.006.00----4.00------------------------1.00----------------------------------1.00-----------
................................................................................................................................................................................TTTTTTTTTTTAATCATTTTAAATG.................................................255.000.00---4.00-------------------------------1.00----------------------------------------
...............................................................................................................................................................................TTTTTTTTTTTTAATCATTTTAAATG.................................................265.000.00---4.00-------------------------------1.00----------------------------------------
................................................................................................................................................................................................................TGGCTGTACTCAGGAGATGGA.....................2115.005.00----------------------1.00----------------1.00-------1.00--------1.00---------------1.00---
...............................................................................................................................................................................................................TTGGCTGTACTCAGGAGATGGATTT..................2514.004.001.00-------1.001.00--------------------1.00---------------------------------------------
.......................................................................................................................................................................................................GGATGTAATTGGCTGTACTCAGGAGATG.......................2814.004.004.00---------------------------------------------------------------------------
...........................................................................................................................................................................AAACTTTTTTTTTTTTATAG...........................................................204.000.00-2.00----2.00---------------------------------------------------------------------
............................................................................................................................................................................................................TAATTGGCTGTACTCAGA............................184.000.00-----3.00---------------------------1.00------------------------------------------
.............................................................................................................................................................................ACTTTTTTTTTTTTAATCATTAG......................................................234.000.00-2.00-2.00------------------------------------------------------------------------
.............................................................................................................................................................................................................AATTGGCTGTACTCAGGAGATGGAT....................2513.003.001.00---1.00----1.00------------------------------------------------------------------
...............................................................................................................................................................................................................TTGGCTGTACTCAGGAGATGGATTTC.................2613.003.00--1.00-----1.00-------1.00-----------------------------------------------------------
................................................................................................................................................................................................................TGGCTGTACTCAGGAGATGGATTTC.................2513.003.00--1.00----1.00---------------1.00----------------------------------------------------
......................................................................................................................................................................................................................TACTCAGGAGATGGATTTCATTCTGGCC........283.000.00-----2.00---------------------------1.00------------------------------------------
..............................................................................................................................................................................................................ATTGGCTGTACTCAGGAGATGGATTTCA................2813.003.00--2.00----------------------------------------------------------1.00--------------
...............................................................................................................................................................................................................TTGGCTGTACTCAGGAGATGGAT....................2313.003.00--------------3.00-------------------------------------------------------------
...........................................................................................................................................................................................................GTAATTGGCTGTACTCAGGAGATG.......................2413.003.002.00-------1.00-------------------------------------------------------------------
..............................................................................................................................................................................................................................AGATGGATTTCATTCTTTGGCCT.....2313.003.00----2.00-----------------1.00-----------------------------------------------------
..........................................................................................................................................................................................................TGTAATTGGCTGTACTCAGGAGATG.......................2513.003.00---------2.00-----1.00------------------------------------------------------------
.......................................................................................................................................................................................................GGATGTAATTGGCTGTACTCAGGAGATGGATTTC.................3413.003.003.00---------------------------------------------------------------------------
............................................................................................................................................................................................................TAATTGGCTGTACTCAGGAGATGG......................2413.003.00-------2.00-----------1.00--------------------------------------------------------
..............................................................................................................................................................................................................ATTGGCTGTACTCAGGAGATG.......................2113.003.00------------------------------1.00-----------------------1.00---------------1.00-----
...............................................................................................................................................................................................................TTGGCTGTACTCAGGAGATGGA.....................2213.003.00--2.00------------------------------------------------1.00------------------------
................................................................................................................................................................................................................TGGCTGTACTCAGGAGATGGATTT..................2413.003.00-----------------1.00------1.00--------------------------------------------1.00------
......................................................................................................................................................................................................................TACTCAGGAGATGGATTTCATTCTG...........253.000.00-----3.00----------------------------------------------------------------------
........................................................................................................................................................................................................GATGTAATTGGCTGTACTCAGGAGATGGATT...................3112.002.002.00---------------------------------------------------------------------------
..............................................................................................................................................................................................................ATTGGCTGTACTCAGGAGATGGATTTCATT..............3012.002.00-------------1.00---------------------------------------------1.00----------------
.............................................................................................................................................................................................................AATTGGCTGTACTCAGGAGATGG......................2312.002.00----1.00--------------------------1.00--------------------------------------------
...................................................................................................................................................................................TTTTTTTTAATCATTTTTAG...................................................202.000.00-1.00----1.00---------------------------------------------------------------------
...............................................................................................................................................................................................................TTGGCTGTACTCAGGAGATGGAAA...................2412.003.00---------------2.00------------------------------------------------------------
.......................................................................................................................................................................................................GGATGTAATTGGCTGTACTCAGGA...........................2412.002.002.00---------------------------------------------------------------------------
..............................................................................................................................................................................................................ATTGGCTGTACTCAGGAGATGGATTTC.................2712.002.00--1.00--------1.00----------------------------------------------------------------
.......................................................................................................................................................................................................................................TCATTCTTTGGCCTCGGAATGT222.000.00---------------------------2.00------------------------------------------------
........................................................................................................................................................................................................GATGTAATTGGCTGTACTCAGGAGA.........................2512.002.00--1.00------1.00------------------------------------------------------------------
............................................................................................................................................................................................................TAATTGGCTGTACTCAGGAGATG.......................2312.002.00-------1.00----------------------------------------------------------1.00---------
.............................................................................................................................................................................ACTTTTTTTTTTTTAATCCG.........................................................202.000.00-2.00--------------------------------------------------------------------------
................................................................................................................................................................................................................TGGCTGTACTCAGGAGATGGATT...................2312.002.00--------1.00-----------------------------1.00-------------------------------------
.......................................................................................................................................................................................................GGATGTAATTGGCTGTA..................................1712.002.00---------------------2.00------------------------------------------------------
....................................................................................................................................................................................................................TGTACTCAGGAGATGGATTTCA................2212.002.00-------2.00--------------------------------------------------------------------
..............................................................................................................................................................................................................ATTGGCTGTACTCAGGAGATGG......................2212.002.00--------------------------------2.00-------------------------------------------
........................................................................................................................................................................................................GATGTAATTGGCTGTACTCAGGAGATGGATTT..................3212.002.001.00------------------------1.00--------------------------------------------------
...........................................................................................................................................................................................................GTAATTGGCTGTACTCAGGAGATGGATTTCATT..............3312.002.00-------------2.00--------------------------------------------------------------
............................................................................................................................................................................................................TAATTGGCTGTACTCAGGAGATGGATTT..................2812.002.00-----------------1.00----------------------------------1.00-----------------------
........................................................................................................................................................................................................GATGTAATTGGCTGTACTCAGGAGATGGATTTC.................3312.002.001.00---------------------------------1.00-----------------------------------------
................................................................................................................................................................................................................TGGCTGTACTCAGGAGATG.......................1912.002.00----------2.00-----------------------------------------------------------------
..............................................................................................................................................................................................................ATTGGCTGTACTCAGGAGATGGA.....................2312.002.00------------------------------------1.00----------------1.00----------------------
............................................................................................................................................................................................................TAATTGGCTGTACTCAGGAGATGGATTTC.................2912.002.00-----------2.00----------------------------------------------------------------
..............................................................................................................................................................................................................ATTGGCTGTACTCAGGAGATGGATT...................2512.002.00--1.00-------------1.00-----------------------------------------------------------
.......................................................................................................................................................................................................GGATGTAATTGGCTGTACTCAGGAGATGG......................2912.002.001.00----------1.00----------------------------------------------------------------
........................................................................................................................................................................................................GATGTAATTGGCTGTACTCAGGAGATGG......................2812.002.002.00---------------------------------------------------------------------------
.............................................................................................................................................................................................................................GAGATGGATTTCATTCTTTGGCCT.....2412.002.00----------2.00-----------------------------------------------------------------
.........................................................................................................................................................................................................ATGTAATTGGCTGTACTCAGGAGATGGATT...................3012.002.002.00---------------------------------------------------------------------------
...............................................................................................................................................................................................................TTGGCTGTACTCAGGAGATGG......................2112.002.00--1.00-----------------------------------------1.00-------------------------------
..............................................................................................................................................................................................................ATTGGCTGTACTCAGGAGATGGATTT..................2612.002.00--1.00-----1.00-------------------------------------------------------------------
.................................................................................................................................................................................................TTTATAGGATGTAATTGGCTGTACTCAGGAGATGG......................3512.002.002.00---------------------------------------------------------------------------
.......................................................................................................................................................................................................GGATGTAATTGGCTGTACTCAGGAGATGGATTT..................3311.001.001.00---------------------------------------------------------------------------
...........................................................................................................................................................................................................GTAATTGGCTGTACTCAGGAGATGGATTTCAT...............3211.001.001.00---------------------------------------------------------------------------
..........................................................................................................................................................................TAAACTTTTTTTTTTTTAATCATTTTATAG..................................................3011.001.00------1.00---------------------------------------------------------------------
.........................................................................................................................................................................................................ATGTAATTGGCTGTACTCAGGAGATGGATTTCATT..............3511.001.00--------------------------------------------------------------1.00-------------
.........................................................................................................................................................................................................ATGTAATTGGCTGTACTCAGG............................2111.001.00---------------------------------------------------------------1.00------------
.............................................................................................................................................................................................................AATTGGCTGTACTCAGGAGA.........................2011.001.00------------------------1.00---------------------------------------------------
...............................................................................................................................................................................................................TTGGCTGTACTCAGGAGATG.......................2011.001.00--------1.00-------------------------------------------------------------------
..................................................................................................................................................................................TTTTTTTTTAATCATTTTATG...................................................211.000.00-1.00--------------------------------------------------------------------------
...................................................................................................................................................................................................................CTGTACTCAGGAGATGGATTTCA................2311.001.00----------------------------1.00-----------------------------------------------
.........................................................................................................................................................................................................ATGTAATTGGCTGTACTCAGGAGATGGAT....................2911.001.001.00---------------------------------------------------------------------------
............................................................................................................................................................................................................TAATTGGCTGTACTCAGGAGATGGATCTC.................291.000.00------------1.00---------------------------------------------------------------
.......................................................................................................................................................................................................GGATGTAATTGGCTGTACTC...............................2011.001.00--------------------------1.00-------------------------------------------------
.......................................................................................................................................................................................................................ACTCAGGAGATGGATTTCATT..............2111.001.00-------------------------------------------------1.00--------------------------
.............................................................................................................................................................................................................AATTGGCTGTACTCAGGAGATGGATTTC.................2811.001.001.00---------------------------------------------------------------------------
.............................................................................................................................................................................................................AATTGGCTGTACTCAGGAGATGGA.....................2411.001.00-----------------------------------------------------------------1.00----------
...............................................................................................................................................................................................................TTGGCTGTACTCAGGAGAT........................1911.001.00-----------------------------------------1.00----------------------------------
..................................................................................................................................................................................TTTTTTTTTAATCATTTTTAG...................................................211.000.00-1.00--------------------------------------------------------------------------
.............................................................................................................................................................................................................AATTGGCTGTACTCAGGAGATGGATTTCATTCTTTG.........3611.001.00----------------------------------1.00-----------------------------------------
.............................................................................................................................................................................................................AATTGGCTGTACTCAGGAGATGGATT...................2611.001.00--------------------1.00-------------------------------------------------------
...........................................................................................................................................................................................................GTAATTGGCTGTACTCAGGAGATGGATTT..................2911.001.001.00---------------------------------------------------------------------------
............................................................................................................................................................................AACTTTTTTTTTTTTAATCATTTTA.....................................................2511.001.00---1.00------------------------------------------------------------------------
..............................................................................................................................................................................................................ATTGGCTGTACTCAGGAGATA.......................2111.001.00-----------------1.00----------------------------------------------------------
.....................................................................................................................................................................................................TAGGATGTAATTGGCTGTACTCAGGAGATG.......................3011.001.00------------------------------------------1.00---------------------------------
................................................................................................................................................................................................................TGGCTGTACTCAGGAGATGGATCTC.................251.000.00------------1.00---------------------------------------------------------------
.............................................................................................................................................................................................................AATTGGCTGTACTCAGGA...........................1811.001.00----------------------------------------1.00-----------------------------------
...............................................................................................................................................................................TTTTTTTTTTTTAATCATTTTACAG..................................................251.000.00---1.00------------------------------------------------------------------------
..............................................................................................................................................................................CTTTTTTTTTTTTAATCAACTG......................................................221.000.00-1.00--------------------------------------------------------------------------
...............................................................................................................................................................................TTTTTTTTTTTTAATCATTTTCAG...................................................241.000.00-1.00--------------------------------------------------------------------------
............................................................................................................................................................................................................TAATTGGCTGTACTCAGGAGATGGATTTCATT..............3211.001.00--1.00-------------------------------------------------------------------------
........................................................................................................................................................................................................GATGTAATTGGCTGTACTCAGGAG..........................2411.001.001.00---------------------------------------------------------------------------
.........................................................................................................................................................................................................................................ATTCTTTGGCCTCGGAA1711.001.00-------------------------------------------1.00--------------------------------
.............................................................................................................................................................................ACTTTTTTTTTTTTAATCATTTTTTTG..................................................271.000.00-1.00--------------------------------------------------------------------------
.......................................................................................................................................................................AAGTAAACTTTTTTTTTTTTGG.............................................................221.000.00---1.00------------------------------------------------------------------------
..........................................................................................................................................................................................................................CAGGAGATGGATTTCATTCTTTG.........2311.001.00-------------------------1.00--------------------------------------------------
................................................................................................................................................................................................................TGGCTGTACTCAGGAGATGGATTTCATTCTT...........3111.001.00------------------------------------------------------------1.00---------------
..............................................................................................................................................................................................................ATTGGCTGTACTCAGGAGAT........................2011.001.00----1.00-----------------------------------------------------------------------
............................................................................................................................................................................................................TAATTGGCTGTACTCAGGATATG.......................231.000.00-------1.00--------------------------------------------------------------------
.................................................................................................................................................................................TTTTTTTTTTAATCATTTTAAATG.................................................241.000.00-1.00--------------------------------------------------------------------------
..............................................................................................................................................................................................................ATTGGCTGTACTCAGGAGATGGATTTCATTA.............3111.002.00-------------1.00--------------------------------------------------------------
..............................................................................................................................................................................................................ATTGGCTGTACTCAGGAG..........................1811.001.00------------------1.00---------------------------------------------------------
.........................................................................................................................................................................................................ATGTAATTGGCTGTACTCAGGAGA.........................2411.001.00--1.00-------------------------------------------------------------------------
....................................................................................................................................................................................TTTTTTTAATCATTTTCAT...................................................191.000.00-1.00--------------------------------------------------------------------------
........................................................................................................................................................................................................GATGTAATTGGCTGTACTCAGGAGATGGATTTCA................3411.001.001.00---------------------------------------------------------------------------
.............................................................................................................................................................................ACTTTTTTTTTTTTAATCATTTCTT....................................................251.000.00------1.00---------------------------------------------------------------------
...............................................................................................................................................................................................................TTGGCTGTACTCAGGAGATGGATCTC.................2611.003.00------------1.00---------------------------------------------------------------
............................................................................................................................................................................................................TAATTGGCTGTACTCAGGAGAT........................2211.001.00---------------------------------------------------------1.00------------------
..........................................................................................................................................................................................................................CAGGAGATGGATTTCATTCT............2011.001.00-------------------1.00--------------------------------------------------------
.......................................................................................................................................................................................................GGATGTAATTGGCTGTACTCA..............................2111.001.00----------------------------------------------------------1.00-----------------
...............................................................................................................................................................................................................TTGGCTGTACTCAGGAGATGGATTTCATTCTTT..........3311.001.00--------------------------------------------------------------------1.00-------
.............................................................................................................................................................................ACTTTTTTTTTTTTAATCATTTTATAG..................................................2711.001.00-1.00--------------------------------------------------------------------------
.............................................................................................................................................................................ACTTTTTTTTTTTTAATCATTA.......................................................221.000.00---1.00------------------------------------------------------------------------
..............................................................................................................................................................................................................ATTGGCTGTACTCAGGAGAGGG......................221.000.00-------------------------------1.00--------------------------------------------
.........................................................................................................................................................................................................ATGTAATTGGCTGTACTCAGGAGATGGATTTC.................3211.001.001.00---------------------------------------------------------------------------
..............................................................................................................................................................................................................ATTGGCTGTACTCAGGAGATGGAT....................2411.001.00----------------1.00-----------------------------------------------------------
................................................................................................................................................................................TTTTTTTTTTTAATCATTTTCAG...................................................231.000.00-1.00--------------------------------------------------------------------------
...........................................................................................................................................................................................................GTAATTGGCTGTACTCAGGAGATGGA.....................2611.001.00---------1.00------------------------------------------------------------------
............................................................................................................................................................................................................TAATTGGCTGTACTCAGGAGA.........................2111.001.00----------------------------------------------1.00-----------------------------
............................................................................................................................................................................................................TAATTGGCTGTACTCAGGAG..........................2011.001.00-------------------------------------------------------------------1.00--------
....................................................................................................................................................................................................ATAGGATGTAATTGGCTGTACTCAGGAGATGGAT....................3411.001.001.00---------------------------------------------------------------------------
...................................................................................................................................................................................TTTTTTTTAATCATTTGAAG...................................................201.000.00-------------------------------------------------------1.00--------------------
.................................................................................................................................................CTTGATGTAGCTGTTTCTTTA....................................................................................2111.001.00--------------------1.00-------------------------------------------------------
........................................................................................................................................................................................................GATGTAATTGGCTGTACTCAGGAGATGGGTTT..................3211.002.001.00---------------------------------------------------------------------------
.......................................................................................................................................................................................................GGATGTAATTGGCTGTATTC...............................2011.002.00--------------------------1.00-------------------------------------------------
..........................................................................................................................................................................................................TGTAATTGGCTGTACTCAGGAGA.........................2311.001.00------------------------------------------------1.00---------------------------
...........................................................................................................................................................................................................................AGGAGATGGATTTCATTCTTTGGCCTCGGA.3011.001.00-----------------------1.00----------------------------------------------------
..................................................................................................................................................................................................................GCTGTACTCAGGAGATGG......................1811.001.00----1.00-----------------------------------------------------------------------
..............................................................................................................................................................................................................................AGATGGATTTCATTCTTTGGCCTCGGA.2711.001.00-----------------------------1.00----------------------------------------------
.....................................................................................................................................................................................................................GTACTCAGGAGATGGATTTCA................2111.001.00-------------------------------------------------------------------------1.00--
.............................................................................................................................................................................................................AATTGGCTGTACTCAGGAGATGGATTTCAT...............3011.001.00-----------------------------------------------------------------------1.00----
..............................................................................................................................................................................................................ATTGGCTGTACTCAGGAGATGGT.....................2311.002.001.00---------------------------------------------------------------------------
.............................................................................................................................................................................................................AATTGGCTGTACTCAGGAGATGGATTTCATTCT............3311.001.00--1.00-------------------------------------------------------------------------
..............................................................................................................................................................................CTTTTTTTTTTTTAATCATCCAT.....................................................231.000.00-1.00--------------------------------------------------------------------------
..............................................................................................................................................................................CTTTTTTTTTTTTAATCAACG.......................................................211.000.00--------------------------------------------------------------------------1.00-
..........................................................................................................................................................................................................TGTAATTGGCTGTACTCAGGAGATGGATTT..................3011.001.00--1.00-------------------------------------------------------------------------
.............................................................................................................................................................................................................AATTGGCTGTACTCAGGAGATGGATTTCATT..............3111.001.00------------------1.00---------------------------------------------------------
................................................................................................................................................................................TTTTTTTTTTTAATCATTTTCAT...................................................231.000.00------1.00---------------------------------------------------------------------
..............................................................................................................................................................................................................ATTGGCTGTACTCAGG............................1640.250.25------------------0.25---------------------------------------------------------
........................................................................................................................................................................................................GATGTAATTGGCTGT...................................1540.250.25------------------------------------0.25---------------------------------------
...................................................................................................................................................................................................................CTGTACTCAGGAGATG.......................1640.250.25----------0.25-----------------------------------------------------------------
................................................................................................................................................................................................................TGGCTGTACTCAGGA...........................1580.120.12---------------------------------------------------------------------------0.12
.........................................................................................................................................................................................................ATGTAATTGGCTGTA..................................1590.110.11--------------0.11-------------------------------------------------------------

Antisense strand
CTGTCTCCAAAAATAAAAAATTACATCATGAGCTATTCAGATTATAAACTATTATGTTTACTTCCTAAGATATAAAATGATATATGGTAGATCTTTTGTACTTATAAAATGTTTTTATAGGGGAACCCTATAATTTGTGACATGGCTTGATGTAGCTGTTTCTTTAAAAGTAAACTTTTTTTTTTTTAATCATTTTATAGGATGTAATTGGCTGTACTCAGGAGATGGATTTCATTCTTTGGCCTCGGAA
.............................................................................................................................................((((((......))))))......(((((....))))).......................................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343336SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR343337DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
...........AATAAAAAATTACATCAGTAG.......................................................................................................................................................................................................................... 211.000.00-------------------------------------1.00--------------------------------------