uc003nbl.2_intron_3_0_chr6_15593313

AAATAGCAGAAATAACTGAAAATAGTTGGTTTAGGCTCATTGTACTGGTCATTTCAGTAAAGTATAACTGATATGTGAAGATCCAGAAATACCACTGTGGGCATTTAAAGTACATAAGTTTTTATTATGATGGAAGAACAGTTTTCATTGGGGAGATTTTTAATTTGCATTGTCTTGTCTTTTTTTTTTTTTTCCTACAGGAAGGAACTTGAAACCTTCAAAGGTAATTTTGTGTTAATTCTTCACTTTA
...............................................................................................((((((...........(((((.......)))))..(((((.((((....((.((.(((.........))).)).))..)))))))))..........))))))...................................................
...............................................................................................96......................................................................................................200................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189782

SRR343337

SRR189784

SRR040029(GSM532914)
G026T. (cervix)

SRR189787

DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

TAX577740(Rovira)
total RNA. (breast)

TAX577739(Rovira)
total RNA. (breast)

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

SRR060168(GSM565978)
5-8F_nucleus. (cell line)

SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

SRR037938(GSM510476)
293Red. (cell line)

.................................................................................................................................................................................TCTTTTTTTTTTTTTTCCTAATTG.................................................

137.00

0.00

80.00

47.00

8.00

2.00

13.00

0.00

8.00

5.00

0.00

2.00

3.00

....................................................................................................................................................................................TTTTTTTTTTTTTCCTACATCCG...............................................

3.00

0.00

2.00

1.00

.................................................................................................................................................................................TCTTTTTTTTTTTTTTCCTATTTG.................................................

2.00

0.00

1.00

.................................................................................................................................................................................TCTTTTTTTTTTTTTTCCTAATCG.................................................

2.00

0.00

2.00

...................................................................................................................................................................................TTTTTTTTTTTTTTCCTACATCCG...............................................

2.00

0.00

1.00

.........................................................................................................................................................................................................AAGGAACTTGAAACCCGTA..............................

1.00

0.00

1.00

.........................................................................................................................................................................TTGTCTTGTCTTTTTTTTTTTTTTCT.......................................................

1.00

0.00

1.00

.............................................................................................................................................................................CTTGTCTTTTTTTTTTTTTTCTGAG....................................................

1.00

0.00

1.00

.................................................................................................................................................................................TCTTTTTTTTTTTTTTCCTACACAG................................................

1.00

0.00

1.00

.....................................................................................................................................................................................TTTTTTTTTTTTCCTACATCCG...............................................

1.00

0.00

1.00

...............................................................................................................................................................................TGTCTTTTTTTTTTTTTTCCTTTCC..................................................

1.00

0.00

1.00

............................................................................................................................................................................TCTTGTCTTTTTTTTTTTCTGG........................................................

1.00

0.00

1.00

............................................................................................................................................................................TCTTGTCTTTTTTTTTTTGGT.........................................................

1.00

0.00

1.00

.................................................................................................................................................................................TCTTTTTTTTTTTTTTCCTACATCCG...............................................

1.00

0.00

1.00

..................................................................................................................................................................................CTTTTTTTTTTTTTTCCTACACAAG...............................................

1.00

0.00

1.00

............................................................................................................................................................................TCTTGTCTTTTTTTTTTTTTATTA......................................................

1.00

0.00

1.00

...............................................................................................................................................................................TGTCTTTTTTTTTTTTTTCCTGGTT..................................................

1.00

0.00

1.00

...TAGCAGAAATAACTGAATTGT..................................................................................................................................................................................................................................

1.00

0.00

1.00

..............................................................................................................................................................................TTGTCTTTTTTTTTTTTTTCGGC.....................................................

1.00

0.00

1.00

.................................................................................................................................................................................................CCTACAGGAAGGAACTTGAAACC..................................

1.00

.................................................................................................................................................................................TCTTTTTTTTTTTTTTCCTATAG..................................................

1.00

0.00

1.00

............................................................................................................................................................................TCTTGTCTTTTTTTTTTTTTAATG......................................................

1.00

0.00

1.00

............................................................................................................................................................................TCTTGTCTTTTTTTTTTTCGTC........................................................

1.00

0.00

1.00

............................................................................................................................................................................TCTTGTCTTTTTTTTTTTTCTAG.......................................................

1.00

0.00

1.00

............................................................................................................................................................................TCTTGTCTTTTTTTTTTTTGCTT.......................................................

1.00

0.00

1.00

...............................................................................................................................................................................TGTCTTTTTTTTTTTTTTCGGAG....................................................

1.00

0.00

1.00

............................................................................................................................................................................TCTTGTCTTTTTTTTTTTTTTGGG......................................................

1.00

0.00

1.00

.................................................................................................................................................................................TCTTTTTTTTTTTTTTCCTAATGG.................................................

1.00

0.00

1.00

...................................................................................................................................................................................TTTTTTTTTTTTTTCCTACAATAG...............................................

1.00

0.00

1.00

.............................................................................................................................................................................CTTGTCTTTTTTTTTTTTTCCTC......................................................

1.00

0.00

1.00

.................................................................................................................................................................................TCTTTTTTTTTTTTTTCCTACAAATA...............................................

1.00

0.00

1.00

...............................................................................................................................................................................TGTCTTTTTTTTTTTTTTCCGGTC...................................................

1.00

0.00

1.00

....................................................................................................GCATTTAAAGTACATGAT....................................................................................................................................

1.00

0.00

1.00

.......................................................................................................................................................................................................................................GTGTTAATTCTTCACTCTC

1.00

0.00

1.00

....................................................................................................................AGTTTTTATTATGATCTG....................................................................................................................

1.00

0.00

1.00

.............................................................................................................................................................................CTTGTCTTTTTTTTTTTCGG.........................................................

1.00

0.00

1.00

.................................................................................................................................................CATTGGGGAGATTTTGGCA......................................................................................

1.00

0.00

1.00

............................................................................................................................................................................TCTTGTCTTTTTTTTTTTTTTACT......................................................

1.00

0.00

1.00

................................AGGCTCATTGTACTGGTCTTTG....................................................................................................................................................................................................

1.00

0.00

1.00

................................AGGCTCATTGTACTGGGCTT......................................................................................................................................................................................................

1.00

0.00

1.00

............................................................................................................................................................................TCTTGTCTTTTTTTTTTTAAAG........................................................

1.00

0.00

1.00

.....................................................................................................................................................GGGGAGATTTTTAATTTG...................................................................................

0.50

..................................................................................................................................................................................CTTTTTTTTTTTTTTCCTACAG..................................................

0.50

0.25

..................................................................................................................................................................................CTTTTTTTTTTTTTTCCTACAGTT................................................

0.25

0.50

0.25

AAATAGCAGAAATAACTGAAAATAGTTGGTTTAGGCTCATTGTACTGGTCATTTCAGTAAAGTATAACTGATATGTGAAGATCCAGAAATACCACTGTGGGCATTTAAAGTACATAAGTTTTTATTATGATGGAAGAACAGTTTTCATTGGGGAGATTTTTAATTTGCATTGTCTTGTCTTTTTTTTTTTTTTCCTACAGGAAGGAACTTGAAACCTTCAAAGGTAATTTTGTGTTAATTCTTCACTTTA ...............................................................................................((((((...........(((((.......)))))..(((((.((((....((.((.(((.........))).)).))..)))))))))..........))))))................................................... ...............................................................................................96......................................................................................................200................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189782	SRR343337	SRR189784	SRR040029(GSM532914) G026T. (cervix)	SRR189787	DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line)	TAX577740(Rovira) total RNA. (breast)	TAX577739(Rovira) total RNA. (breast)	SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line)	SRR060168(GSM565978) 5-8F_nucleus. (cell line)	SRR330916(SRX091754) tissue: normal skindisease state: normal. (skin)	SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver)	SRR037938(GSM510476) 293Red. (cell line)
...............................TAGGCTCATTGTACTGTTG........................................................................................................................................................................................................	19		1.00	0.00	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
............................................................AGTATAACTGATATGACC............................................................................................................................................................................	18		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................................................................TAATTTTGTGTTAATTTTT.......	19		1.00	0.00	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
....................................................................................................................................................................................GTAGGAAAAAAAAAAAAA....................................................	18	0	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-