ID: uc003naz.2_intron_2_0_chr6_13616754_f.3p
GENE: (3)
chr6:13617802-13618051+


(4)
B-CELL 		(3)
BRAIN 		(2)
BREAST 		(7)
CELL-LINE 		(3)
HEART 		(2)
HELA 		(3)
LIVER 		(6)
OTHER 		(5)
SKIN

Sense strand
TCTTCCAATGCTTGAGAGTTGGTGGCAGTGTACTAGGGAGTGACTATTGCTTTCCAAACTGATGAGAGCTCCTGAGTAGAAATTGAGGGTGTTGGTAATGAAAGGGGGTGTCTTACTTGTAAAGGCAAATGAAATAATATAACATGTTTTGAGTAATCTTTACTGCCATTGCAGTCAGTGGTTTTGTTTTTTTTCCTTAGCATCAAGAAATCGCCAGGAAAGGTGAAAGAAGGTATGACTATTCTAATTT
...................................................................((.(((.(((....))).)))))...........((((((.((((((.......))))))...(((((((........((...((....))...)).(((((((....))))))).)))))))..))))))....................................................
...................................................................68..................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR343335SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189787SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189782SRR390723(GSM850202)
total small RNA. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTTTTGA.......................................................2231.000.0016.0014.00------1.00--------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTCC...........................................................1823.000.009.007.00--2.00-5.00----------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTCCTT.........................................................2017.000.008.007.00--2.00------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTGA...........................................................1813.000.0010.003.00---------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTCCT..........................................................199.000.002.001.00--3.002.00--1.00--------------------------
..................................................................................................................................................................................TGGTTTTGTTTTTTTTACTC....................................................208.000.00--2.006.00-------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTTTTTA.......................................................2217.001.003.004.00---------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTTTTG........................................................217.000.004.001.00------2.00--------------------------
................................................................................................................................................................................AGTGGTTTTGTTTTTTTTTC......................................................205.000.00--5.00--------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTCTTG........................................................215.000.003.002.00---------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTCTTG.........................................................204.000.003.001.00---------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTTTGA........................................................214.000.00-4.00---------------------------------
.....................................................................................................................................................................................TTTTGTTTTTTTTCCGGG...................................................184.000.00--4.00--------------------------------
................................................................................................................................................................................AGTGGTTTTGTTTTTTTGGC......................................................203.000.00--2.001.00-------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTTTTGAA......................................................233.000.002.001.00---------------------------------
.......................................................................................................................................................................................................................AGGAAAGGTGAAAGAAGTTA...............203.000.00-----------------1.00------------1.001.00---
................................................................................................................................................................................AGTGGTTTTGTTTTTTTTTCTC....................................................223.000.00--2.001.00-------------------------------
............................................................................................................................GCAAATGAAATAATATAACATGTTTTG...................................................................................................2713.003.00---------3.00-------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTCCTT..........................................................192.000.00-----2.00-----------------------------
................................................................................................................................................................................AGTGGTTTTGTTTTTTTTA.......................................................192.000.001.001.00---------------------------------
...............................................................................................................................................................................CAGTGGTTTTGTTTTTTTTCTTCT...................................................242.000.00---2.00-------------------------------
.................................................................................................................................................................................................................ATCGCCAGGAAAGGTGAAAGAAGGTATGA............2912.002.00----------2.00------------------------
................................................................AGAGCTCCTGAGTAGAAATTGAGGGTCGG.............................................................................................................................................................292.000.00--2.00--------------------------------
...............................................................................................................................................................................CAGTGGTTTTGTTTTTTTTTCTC....................................................232.000.00--1.001.00-------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTTG..........................................................192.000.002.00----------------------------------
................................................................................................................................................................................AGTGGTTTTGTTTTTTTTTTCC....................................................222.000.00--2.00--------------------------------
..................................................................................................................................................................................TGGTTTTGTTTTTTTTCCCTTT..................................................222.000.00---2.00-------------------------------
................................................................................................................................................................................AGTGGTTTTGTTTTTTTTCCTTTTAG................................................262.000.00---2.00-------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTCCTG.........................................................202.000.00-----2.00-----------------------------
.......................................................................................................................................................................................................................AGGAAAGGTGAAAGAAGTTAA..............212.000.00-----------2.00-----------------------
................................................................................................................................................................................AGTGGTTTTGTTTTTTTTCCTTT...................................................232.000.00--2.00--------------------------------
............................................................................................................................................................................................................AAGAAATCGCCAGGAAAGGT..........................2012.002.00-------------------1.00-------1.00-------
................................................................................................................................................................................AGTGGTTTTGTTTTTTTTTCTT....................................................222.000.00--1.001.00-------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTTGA.........................................................202.000.001.001.00---------------------------------
..................................................................................................................................................................................TGGTTTTGTTTTTTTTCCTTGAG.................................................231.000.00---1.00-------------------------------
...................................................................................................................................................................................................................CGCCAGGAAAGGTGAAAGAAGTT................231.000.00-------1.00---------------------------
...........................................................................................................................................................................................................CAAGAAATCGCCAGGAAAGGTGA........................2311.001.00-------------------------1.00---------
..................................................................................................................................................................................TGGTTTTGTTTTTTTTCACTC...................................................211.000.00--1.00--------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTGAA.........................................................201.000.00-1.00---------------------------------
.................................................................................................................................................................................GTGGTTTTGTTTTTTTTCCTTTTAG................................................251.000.00---1.00-------------------------------
................................................................................................................................................................................AGTGGTTTTGTTTTTTTGT.......................................................191.000.00-1.00---------------------------------
............................................................................................................................................................................................................AAGAAATCGCCAGGAAAGGTGAAAGAAG..................2811.001.00---------------1.00-------------------
.....................................................CCAAACTGATGAGAGCTCCTGAGTAGAAATT......................................................................................................................................................................3111.001.00-----------------------------1.00-----
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTTTTTTA......................................................2311.001.00-1.00---------------------------------
.........................................................................................................................................................................................................................GAAAGGTGAAAGAAGGTATGATT..........231.000.00--------------------------1.00--------
................................................................................................................................................................................AGTGGTTTTGTTTTTTTTTTC.....................................................211.000.00------------------------1.00----------
...............................................................................................................................................................................CAGTGGTTTTGTTTTTTTTTCCT....................................................231.000.00--1.00--------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTTTTGAAT.....................................................241.000.00-1.00---------------------------------
........................................................................................................GGGGTGTCTTACTTGTAAAGGCAAATGAAAT...................................................................................................................3111.001.00-------------1.00---------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTTTGAAA......................................................231.000.00-1.00---------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTTTTT........................................................2111.001.001.00----------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTTGT.........................................................201.000.00-1.00---------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTTTTTT.......................................................2211.001.001.00----------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTTTTGAAA.....................................................241.000.001.00----------------------------------
..................................................................................................................................................................................TGGTTTTGTTTTTTTTCCTTTGT.................................................231.000.00---1.00-------------------------------
..........CTTGAGAGTTGGTGGCAGTGTACTAGGGAGTG................................................................................................................................................................................................................3211.001.00--1.00--------------------------------
........................................................................TGAGTAGAAATTGAGGGTGTTG............................................................................................................................................................2211.001.00-----------------------1.00-----------
.....................................................................................................................................................................................TTTTGTTTTTTTTCCTTACTGG...............................................221.000.00---1.00-------------------------------
..............AGAGTTGGTGGCAGTGTACTAGGG....................................................................................................................................................................................................................2411.001.00--1.00--------------------------------
.............................................................ATGAGAGCTCCTGAGTAGAAATTGA....................................................................................................................................................................2511.001.00------------1.00----------------------
.......................................................................................................................................................................................TTGTTTTTTTTCCTTAGACG...............................................201.000.00---1.00-------------------------------
...........................................................................................................................................................................................................CAAGAAATCGCCAGGAAAG............................1911.001.00-------1.00---------------------------
......................................................................................................................................................................................TTTGTTTTTTTTCCTTAACC................................................201.000.00---1.00-------------------------------
............................................................................................................................GCAAATGAAATAATACATG...........................................................................................................191.000.00---------------------1.00-------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTTA..........................................................191.000.00-1.00---------------------------------
............................................................................................................................................................................AGTCAGTGGTTTTGTTTTTTTCCCT.....................................................251.000.00--1.00--------------------------------
............................................................................................................................................................................................................AAGAAATCGCCAGGAAAGG...........................1911.001.00--------------1.00--------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTTTTA........................................................211.000.00-1.00---------------------------------
...............................................................................................................................................................................CAGTGGTTTTGTTTTTTTTCTCCT...................................................241.000.00---1.00-------------------------------
.....................................................................................................................................................................................................................CCAGGAAAGGTGAAAGAAGTT................211.000.00-------1.00---------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTTTTTTGA......................................................2311.001.001.00----------------------------------
........................................................................................................................................................................TTGCAGTCAGTGGTTTTGTTTCCTC.........................................................251.000.00---1.00-------------------------------
..........................................................................................................................................................................................................TCAAGAAATCGCCAGGAAAGGTGAAAGAAG..................3011.001.00-------------1.00---------------------
................................................................................................................................................................................AGTGGTTTTGTTTTTTTTCTTC....................................................2221.000.50--0.500.50-------------------------------
.....................................................................................................................................................................................TTTTGTTTTTTTTCCTGGAG.................................................201.000.00---1.00-------------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTCGA..........................................................191.000.00-----1.00-----------------------------
.............................................................................................................................................................................GTCAGTGGTTTTGTTTCTGA.........................................................201.000.00-1.00---------------------------------
...................................................................................TGAGGGTGTTGGTAATGAAGAT.................................................................................................................................................221.000.00--1.00--------------------------------
.......................................................AAACTGATGAGAGCTCCTGAGTAGAAATTG.....................................................................................................................................................................3011.001.00--------------------1.00--------------
................................................................................................................................................................................AGTGGTTTTGTTTTTTTTCTTCT...................................................2321.000.50--0.500.50-------------------------------
................................................................................................................................................................................AGTGGTTTTGTTTTTTCCTC......................................................201.000.00---1.00-------------------------------
................................................................................................................................................................................AGTGGTTTTGTTTTTTTTC.......................................................1920.500.50--0.50--------------------------------
................................................................................................................................................................................AGTGGTTTTGTTTTTTTTCTTTT...................................................2320.500.50---0.50-------------------------------
................................................................................................................................................................................AGTGGTTTTGTTTTTTTTCTC.....................................................2120.500.50--0.50--------------------------------
................................................................................................................................................................................AGTGGTTTTGTTTTTTTTCTCTT...................................................2320.500.50--0.50--------------------------------
................................................................................................................................................................................AGTGGTTTTGTTTTTTTTCT......................................................2020.500.50---0.50-------------------------------
...........................................................................GTAGAAATTGAGGGTGT..............................................................................................................................................................1750.200.20----------------------------------0.20

Antisense strand
TCTTCCAATGCTTGAGAGTTGGTGGCAGTGTACTAGGGAGTGACTATTGCTTTCCAAACTGATGAGAGCTCCTGAGTAGAAATTGAGGGTGTTGGTAATGAAAGGGGGTGTCTTACTTGTAAAGGCAAATGAAATAATATAACATGTTTTGAGTAATCTTTACTGCCATTGCAGTCAGTGGTTTTGTTTTTTTTCCTTAGCATCAAGAAATCGCCAGGAAAGGTGAAAGAAGGTATGACTATTCTAATTT
...................................................................((.(((.(((....))).)))))...........((((((.((((((.......))))))...(((((((........((...((....))...)).(((((((....))))))).)))))))..))))))....................................................
...................................................................68..................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR343335SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189787SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189782SRR390723(GSM850202)
total small RNA. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................CAAACTGATGAGAGCTTATC................................................................................................................................................................................ 201.000.00-------1.00---------------------------
.......ATGCTTGAGAGTTGGTGGCAGTGTCGG........................................................................................................................................................................................................................ 271.000.00---1.00-------------------------------
..................................................................................................................................................................................AAAAAAAACAAAACCA........................................................ 1601.001.00----------------------1.00------------
...................................................................................................................................................................ACTGACTGCAATGGCA....................................................................... 1611.001.00------------1.00----------------------
.................................................................................................................................................................................GTGGTTTTGTTTTTTTTCG...................................................... 191.000.00----------------------------1.00------
..................................................................................................TGAAAGGGGGTGTCTTCAAC.................................................................................................................................... 201.000.00------------------1.00----------------
..................................................................................................................................................................................................CCTTAGCATCAAGAAAGTG..................................... 191.000.00----------------1.00------------------
..............................................................................GAAATTGAGGGTGTTAAA.......................................................................................................................................................... 181.000.00--------------------------------1.00--
...............................................................TACTCAGGAGCTCTC............................................................................................................................................................................ 1560.330.33---------------------------------0.33-