ID: uc003mzp.3_intron_2_0_chr6_10990676_r.3p
GENE: (5)
chr6:10990626-10990875-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(8)
B-CELL 		(13)
BRAIN 		(14)
BREAST 		(27)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(3)
LIVER 		(2)
OTHER 		(2)
RRP40.ip 		(1)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTCCTTCTATCATGGAGTTTTTGGTGAATCCTAGAACTGGCACAGTAATTGGGGAATTTATTAGTGTGGATTTTGTTATATGATCATGTCATATGTGCTACTCATTTTCAATTACCATGCAGAGAGAGAATCTCACTTGACAAAGAAGAATGAACAGTCCTTCCTGGAAGAATAGTGATTTTTATACTGTACTTTTATAGGTTTCTTTGGACCAACACTGAACAGTTTTATCCACATTCTTATGTACTCC
.......................................................................................((((...(((....((.(((((............))))).))....))).)))).(((((..((......(((.....)))......))..)))))...................................................................
.......................................................................................88....................................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189782SRR189784SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189786SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037938(GSM510476)
293Red. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029129(GSM416758)
SW480. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR189785SRR029125(GSM416754)
U2OS. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR191442(GSM715552)
107genomic small RNA (size selected RNA from . (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
....................................................................................................................................................................TGGAAGAATAGTGATTTTGTTG................................................................221248.0011.0037.0041.006.005.008.0025.0015.003.0010.004.0010.004.003.001.002.004.003.008.003.001.004.004.006.003.001.003.003.001.002.001.00-2.00-1.00-1.00-3.001.001.00-1.001.001.001.00--1.00-1.00-1.00-----1.001.00-1.001.00--1.001.00---1.00-1.001.001.001.00---
....................................................................................................................................................................TGGAAGAATAGTGATTTTG...................................................................191210.0011.0010.00115.0045.0013.0010.001.00-2.00----1.00-2.00---1.002.00-----1.00----2.00--1.00--1.00--------2.00-------------1.00------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGTT.................................................................211148.0011.006.002.00-58.00-10.006.0020.004.003.002.005.001.001.002.002.002.00-1.001.001.001.00--2.001.00-2.00-2.00-1.001.00-1.00-1.00--1.001.00--1.00--2.00-1.00--1.00-----------1.00------1.00-------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGT..................................................................20174.0011.002.00--20.001.006.004.001.003.001.001.001.00-5.002.001.001.001.002.001.001.00--1.001.00-1.00-2.00---1.00-2.002.001.00-1.00---1.00-1.00--1.00-1.00--1.00--1.00-----------1.00-------1.00--
....................................................................................................................................................................TGGAAGAATAGTGATCTTG...................................................................1960.000.0016.001.0041.00-1.00-------------------------1.00-----------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGTCG................................................................22151.0011.0040.003.002.00-5.00-------------------------------------------------------------1.00-----------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGCTG................................................................22124.0011.0019.001.003.00-1.00-------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATATTG...................................................................1920.000.00-3.0015.00-1.00-------------------------1.00-----------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGTTT................................................................22116.0011.005.00---2.00----2.001.00---1.001.00----1.00--1.001.00--1.00--------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTTGTT...............................................................23116.002.009.00---3.00-1.00--1.00-------------1.001.00-----------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTT....................................................................18111.0011.00--1.001.00---1.00---1.00-1.002.00----1.00-1.00----------1.001.00--------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTTTGT...............................................................23110.002.001.00---1.001.00-----1.002.001.00-------1.00-----1.00--------------------1.00-----------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGTTA................................................................22110.0011.002.001.00--1.00-2.00--1.00-------------------------------1.00--------------1.00-----------1.00---------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTTTTT...............................................................2319.002.00------------5.00---------------1.00--1.00---------------------2.00------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGCCG................................................................2218.0011.007.001.00----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTCG...................................................................1937.001.003.000.333.33-0.33-------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATCCTG...................................................................195.000.003.00-1.00-1.00-------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTA...................................................................1915.0011.00-4.001.00---------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATCTCG...................................................................195.000.003.00-2.00---------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGGTG................................................................2215.0011.002.00---1.00-1.00-------------------1.00---------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGTAG................................................................2215.0011.002.001.001.00-------------1.00-------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGGCG................................................................2215.0011.005.00-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGATG................................................................2214.0011.001.002.001.00---------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGCT.................................................................2114.0011.003.00-----1.00-----------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGAAG................................................................2213.0011.00-2.001.00---------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGTC.................................................................2113.0011.001.00-1.00-1.00-------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTTCGT...............................................................2313.002.003.00-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGTGG................................................................2213.0011.002.00-----------1.00-----------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTAG...................................................................1933.001.000.331.330.67-0.67-------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGCAG................................................................2213.0011.001.002.00----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTGTTG.................................................................2132.671.001.330.670.33-----------------------------0.33---------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTGTT..................................................................2032.331.001.33---0.67--0.33----------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTGTT................................................................2212.002.001.00--------1.00--------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTTT.................................................................2112.002.002.00-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTGCT................................................................2212.002.001.00---1.00-------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTT...................................................................1912.002.00-1.001.00---------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTTGT................................................................2212.002.001.001.00----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGA..................................................................2012.0011.001.00--1.00--------------------------------------------------------------------------
..............................................AATTGGGGAATTTATTCT..........................................................................................................................................................................................182.000.00---------------2.00--------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGGAG................................................................2212.0011.002.00-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGCTA................................................................2212.0011.002.00-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGG..................................................................2012.0011.00-1.00---------1.00------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTATTG................................................................2212.0011.00-1.00--------------1.00-------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTTTT................................................................2212.002.001.00----------------------------1.00------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATCTG....................................................................182.000.00-1.001.00---------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGAA.................................................................2112.0011.00----------------1.00--1.00----------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTT..................................................................2012.002.001.00--1.00--------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATCTT....................................................................181.000.00--1.00---------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTT.....................................................................1731.001.000.33--0.33------------------------------------------------------------------------0.33-
....................................................................................................................................................................TGGAAGAATAGTGATTTTAGTG................................................................2211.0011.001.00-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTCTG................................................................2211.002.00-1.00----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATAATG...................................................................191.000.00-1.00----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTATGT...............................................................231.000.00-------------1.00----------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTTTG................................................................2211.002.001.00-----------------------------------------------------------------------------
............TGGAGTTTTTGGTGAATCCT..........................................................................................................................................................................................................................2011.001.00--------------------------------------------------1.00---------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTATT.................................................................2111.0011.00---1.00--------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTCG.................................................................2111.002.00----1.00-------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGACG................................................................2211.0011.001.00-----------------------------------------------------------------------------
........................................................................................................................................................................................TACTGTACTTTTATAACTG...............................................191.000.00--1.00---------------------------------------------------------------------------
............................................................................................ATGTGCTACTCATTTGGC............................................................................................................................................181.000.00----------------------------------------------------1.00-------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTGAT................................................................2211.002.00----1.00-------------------------------------------------------------------------
.....................................................................................................................................................................GGAAGAATAGTGATTTTTTTTT...............................................................221.000.00--------------------------------------1.00---------------------------------------
.............................................................................................................................................................................................................TTTGGACCAACACTGAACAGTTTT.....................2411.001.00--------------------------------------------------1.00---------------------------
.....................................................................................................................................................................GGAAGAATAGTGATTTTTTT.................................................................201.000.00-------1.00----------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGTCT................................................................2211.0011.001.00-----------------------------------------------------------------------------
......................................................................................................................................................................GAAGAATAGTGATTTTTTTG................................................................201.000.00----------------------------------------1.00-------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTATGA...............................................................231.000.00-------------1.00----------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGGTT................................................................2211.0011.00-------------1.00----------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGCTC................................................................2211.0011.00--------------------------------------------------------------1.00---------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTCAGT...............................................................2311.002.001.00-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTGTCT...............................................................2311.002.00----1.00-------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATCTTC...................................................................191.000.00--1.00---------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTTCA................................................................2211.002.001.00-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATGCTG...................................................................191.000.00--1.00---------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTGT.................................................................2111.002.001.00-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGTGT................................................................2211.0011.001.00-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTCG..................................................................2011.0011.001.00-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGAT.................................................................2111.0011.00----1.00-------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGCTT................................................................2211.0011.001.00-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTCGTT...............................................................2311.002.00----1.00-------------------------------------------------------------------------
.....................................................................................................................................................................GGAAGAATAGTGATTTTGTTT................................................................211.000.00-----------1.00------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGGCT................................................................2211.0011.001.00-----------------------------------------------------------------------------
........................................................................................................................................................................AGAATAGTGATTTTTTTGT...............................................................191.000.00------------1.00-----------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTTTGA...............................................................2311.002.00---------1.00--------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTGTCC................................................................2211.0011.00----1.00-------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATATCG...................................................................191.000.00--1.00---------------------------------------------------------------------------
.....................................................................................................................................................................GGAAGAATAGTGATTTTGTTG................................................................211.000.00---------1.00--------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTCTGT...............................................................2311.002.00--1.00---------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTCGTT................................................................2211.0011.00----1.00-------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTTGAT...............................................................2311.002.001.00-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATACTG...................................................................191.000.001.00-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTTTCA.................................................................2111.002.00--1.00---------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATT......................................................................1650.800.800.60-0.20---------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTGTTG..................................................................2050.800.800.600.20----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTATG...................................................................1950.800.800.200.60----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTC....................................................................1830.671.00-0.33--0.33-------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTCT...................................................................1930.671.00-0.330.33---------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTCGG...................................................................1950.400.800.20-0.20---------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTGTG...................................................................1950.400.800.200.20----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTCAG..................................................................2030.331.00-0.33----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTGGT..................................................................2030.331.00-------0.33----------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTGGTT.................................................................2130.331.00---------------------------------------0.33--------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTGT...................................................................1930.331.000.33-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTCGT..................................................................2030.331.000.33-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTGGTC.................................................................2130.331.000.33-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTCGTT.................................................................2130.331.000.33-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTCGTG.................................................................2130.331.000.33-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTTGCTG.................................................................2130.331.000.33-----------------------------------------------------------------------------
..........................................................................................ATATGTGCTACTCAT.................................................................................................................................................1550.200.20-----------------------------------------------------------------------------0.20
....................................................................................................................................................................TGGAAGAATAGTGATTCCGT..................................................................2050.200.800.20-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTA.....................................................................1750.200.80-0.20----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTGATG..................................................................2050.200.800.20-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTATA...................................................................1950.200.800.20-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTGTGT..................................................................2050.200.80--------0.20---------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTAAG...................................................................1950.200.800.20-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTAAA...................................................................1950.200.80--0.20---------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTCCG...................................................................1950.200.800.20-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTCG....................................................................1850.200.800.20-----------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTATAG..................................................................2050.200.80-------------------------0.20----------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTG.....................................................................1750.200.80--0.20---------------------------------------------------------------------------
....................................................................................................................................................................TGGAAGAATAGTGATTGG....................................................................1850.200.80-0.20----------------------------------------------------------------------------
...................................................................................................................................................................CTGGAAGAATAGTGAT.......................................................................1660.170.170.17-----------------------------------------------------------------------------

Antisense strand
CTCCTTCTATCATGGAGTTTTTGGTGAATCCTAGAACTGGCACAGTAATTGGGGAATTTATTAGTGTGGATTTTGTTATATGATCATGTCATATGTGCTACTCATTTTCAATTACCATGCAGAGAGAGAATCTCACTTGACAAAGAAGAATGAACAGTCCTTCCTGGAAGAATAGTGATTTTTATACTGTACTTTTATAGGTTTCTTTGGACCAACACTGAACAGTTTTATCCACATTCTTATGTACTCC
.......................................................................................((((...(((....((.(((((............))))).))....))).)))).(((((..((......(((.....)))......))..)))))...................................................................
.......................................................................................88....................................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189782SRR189784SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189786SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037938(GSM510476)
293Red. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029129(GSM416758)
SW480. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR189785SRR029125(GSM416754)
U2OS. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR191442(GSM715552)
107genomic small RNA (size selected RNA from . (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
....................................................................................................................................................CCAGGAAGGACTGTTCATT................................................................................... 1911.001.00------------------------------------------------------1.00-----------------------