ID: uc003mzg.2_intron_0_0_chr6_10695303_f.3p
GENE: (1)
chr6:10697357-10697606+


(2)
B-CELL 		(4)
BREAST 		(9)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HEART 		(2)
HELA 		(1)
KIDNEY 		(1)
LIVER 		(2)
OTHER 		(8)
SKIN 		(1)
XRN.ip

Sense strand
TGGTAAACTACATGTCATTTTGTAGTTTAACATATCATTTTTCCATTTATAGGATCCATTGATAGTTTTCATGAATCGTGGAATGATTTATCTTTTCAGAAACAGATAAATGGTTCCGTGATTCATGAAAACTACCAGTGGATAGAGTTGGTAGAACTGTGGTGTGACTGGCATTAATTGTATGTTTTCATCTTCAGCAGCAATGGACTCTTGTGGCTGACTTCACTCACCATGCTCACACTGCCTCCTT
...............................................................(((((((((((((((((((((.((((((((.((....)).)))))))).))))))))))))))))))))).....................................................................................................................
...............................................................64....................................................................134..................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782SRR037931(GSM510469)
293GFP. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343336SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
.........................................................................................................................................GTGGATAGAGTTGGTAGAACTGTGGTGTGACTGGCATTAATTGTATGTTTTCATCTTCAGCAG..................................................6318.008.008.00---------------------------------
............................................................................................................AATGGTTCCGTGATTCATGAAA........................................................................................................................2217.007.00--1.001.00-1.00-1.00--1.00---1.00------------------1.00
............................................................................................................................................GATAGAGTTGGTAGAACTGTGGTGTGACTGGCATTAATTGTATGTTTTCATCTTCAGCAG..................................................6017.007.00-7.00--------------------------------
....................................................................TCATGAATCGTGGAATGATTTA................................................................................................................................................................2216.006.00--4.00--------------------1.00-1.00--------
......................................................................................................................................CCAGTGGATAGAGTTGGTAGAACTGTGGTGTGACTGGCATTAATTGTATGTTTTCATCTTCAGCAG..................................................6616.006.006.00---------------------------------
..........................................................................................TCTTTTCAGAAACAGATA..............................................................................................................................................1825.005.00---3.00-1.00-1.00--------------------------
.............................................................................................................................................ATAGAGTTGGTAGAACTGTGGTGTGACTGGCATTAATTGTATGTTTTCATCTTCAGCAG..................................................5914.004.00-4.00--------------------------------
.......................................................................................................................................................................................................GCAATGGACTCTTGTGGCTGAC.............................2212.002.00--------2.00-------------------------
....................................................................TCATGAATCGTGGAATGATTT.................................................................................................................................................................2112.002.00-----------------1.00---1.00------------
................................................................................................................................................................................................TTCAGCAGCAATGGACTCT.......................................1912.002.00----2.00-----------------------------
............................................................................................................AATGGTTCCGTGATTCATGA..........................................................................................................................2011.001.00------1.00---------------------------
.................................................................................................................................................................GTGTGACTGGCATTAATTGTATGT.................................................................2411.001.00----1.00-----------------------------
............................................................................................................AATGGTTCCGTGATTCATGATA........................................................................................................................2211.001.00---1.00------------------------------
....................................................................................................................................................................................................................................ACCATGCTCACACTGCCTCC..2011.001.00-------------1.00--------------------
..............................................................................................................................................................................TAATTGTATGTTTTCATCTTCAGCAG..................................................2611.001.00---------1.00------------------------
.......................................................................................................................................................TAGAACTGTGGTGTGTCGA................................................................................191.000.00---------------1.00------------------
............................................................................................................AATGGTTCCGTGATTCATGAA.........................................................................................................................2111.001.00-------------------------------1.00--
................................................................................................................................AAACTACCAGTGGATAGCTGT.....................................................................................................211.000.00------1.00---------------------------
.............................................................................................................................................ATAGAGTTGGTAGAATCTT..........................................................................................191.000.00-------------------1.00--------------
..................................................................................................................................................................................................................................TCACCATGCTCACACTGCC.....1911.001.00----------------------------1.00-----
...................................................................................................................................................................................................AGCAGCAATGGACTCTTG.....................................1811.001.00----------------1.00-----------------
...........................................................................................................................................................................CATTAATTGTATGTTTTCATCTTCAGCAG..................................................2911.001.00------------------------------1.00---
.....................................................................................................................................................................................................................TGGCTGACTTCACTCACC...................1811.001.00------------1.00---------------------
................................................ATAGGATCCATTGATAG.........................................................................................................................................................................................1711.001.00---------------------------1.00------
...................................................................TTCATGAATCGTGGAATGATTT.................................................................................................................................................................2211.001.00----------1.00-----------------------
...............................................................................................................................................AGAGTTGGTAGAACTGTGGTGTGACTGGCATTAATTGTATGTTTTCATCTTCAGCAG..................................................5711.001.00-1.00--------------------------------
....................................................................TCATGAATCGTGGAATGATT..................................................................................................................................................................2011.001.00--------------------------------1.00-
..........................................................................................................................................................................................................ATGGACTCTTGTGGCTGACTTCACTCACCATGC...............3311.001.00-----------1.00----------------------
..............................CATATCATTTTTCCATAAG.........................................................................................................................................................................................................191.000.00--------------------1.00-------------
......................................................................................................................................................GTAGAACTGTGGTGTGACTGGCATTAATTG......................................................................3011.001.00----------------------1.00-----------
....................................................................................................................................................TGGTAGAACTGTGGTG......................................................................................1620.500.50-----------0.50----------------------
..................................................................................................................................................GTTGGTAGAACTGTG.........................................................................................1590.110.11------------0.11---------------------

Antisense strand
TGGTAAACTACATGTCATTTTGTAGTTTAACATATCATTTTTCCATTTATAGGATCCATTGATAGTTTTCATGAATCGTGGAATGATTTATCTTTTCAGAAACAGATAAATGGTTCCGTGATTCATGAAAACTACCAGTGGATAGAGTTGGTAGAACTGTGGTGTGACTGGCATTAATTGTATGTTTTCATCTTCAGCAGCAATGGACTCTTGTGGCTGACTTCACTCACCATGCTCACACTGCCTCCTT
...............................................................(((((((((((((((((((((.((((((((.((....)).)))))))).))))))))))))))))))))).....................................................................................................................
...............................................................64....................................................................134..................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782SRR037931(GSM510469)
293GFP. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343336SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
.................................................................................................................................................................................................TCAGCAGCAATGGACCG........................................ 171.000.00------------------1.00---------------
.............................................................................................................................................................................................................................TTCACTCACCATGCTAA............ 171.000.00---------1.00------------------------
...................................................................................................................................................................................TGCTGCTGAAGATGAAAACATAC................................................ 2311.001.00--------------------------1.00-------
..........................................................................................................................................................................................................................................CTCACACTGCCTCCTTAA 181.000.00------------------------1.00---------
...........................................................................................................TCATGAATCACGGAACCATTT.......................................................................................................................... 2111.001.00-----------------------------1.00----