ID: uc003mya.2_intron_4_0_chr6_8419911_r.3p
GENE: (4)
chr6:8419861-8420110-


(26)
B-CELL
(14)
BRAIN
(30)
BREAST
(44)
CELL-LINE
(22)
CERVIX
(2)
HEART
(1)
HELA
(14)
LIVER
(1)
RRP40.ip
(10)
SKIN
(4)
UTERUS
(1)
XRN.ip

Sense strand
AGTATATCTTTTTTAATATCATCACATATGTACTTGTTACAACCGATTGTGAATAAGAATATTCTGGATTACCGAACAAATGTAGTTGAAGATCTGCTTTTGTTTTTTAGACCAATGAAATTTCTGATAAAGCTTGATTATAGTTCATATGTTTAAATAAGGAGGGTTTTTTTGTTTGTTTTTTTAATACCTTCTTGAAGGTGTGGTGCTTATTTCCCTGGCACTATGTGCAGATGCCGTCATTGGAAAT
.......................................................................................(((((...((((((.((.(((((((..(((((.....((((........))))...)))))..))))))).)).)))))).))))).............................................................................
......................................................................................87.......................................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR029124(GSM416753)
HeLa. (hela)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR038855(GSM458538)
D10. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR037938(GSM510476)
293Red. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577740(Rovira)
total RNA. (breast)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR037936(GSM510474)
293cand1. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
TAX577579(Rovira)
total RNA. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR040031(GSM532916)
G013T. (cervix)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040039(GSM532924)
G531T. (cervix)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
GSM532878(GSM532878)
G691T. (cervix)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
TAX577588(Rovira)
total RNA. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR038854(GSM458537)
MM653. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR038857(GSM458540)
D20. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
GSM532886(GSM532886)
G850T. (cervix)
SRR029127(GSM416756)
A549. (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR040040(GSM532925)
G612N. (cervix)
GSM532889(GSM532889)
G576N. (cervix)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
GSM532883(GSM532883)
G871N. (cervix)
SRR029129(GSM416758)
SW480. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR029128(GSM416757)
H520. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR040038(GSM532923)
G531N. (cervix)
SRR038860(GSM458543)
MM426. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR038856(GSM458539)
D11. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM532872(GSM532872)
G652T. (cervix)
SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)
SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)
SRR040018(GSM532903)
G701N. (cervix)
SRR191488(GSM715598)
14genomic small RNA (size selected RNA from t. (breast)
SRR040030(GSM532915)
G013N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR040010(GSM532895)
G529N. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR038858(GSM458541)
MEL202. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
GSM532890(GSM532890)
G576T. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
GSM532887(GSM532887)
G761N. (cervix)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)
SRR040027(GSM532912)
G220T. (cervix)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)
SRR191465(GSM715575)
113genomic small RNA (size selected RNA from . (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
...................................................................................................................................................................GGGTTTTTTTGTTTGTTTTTTTGGC..............................................................257.000.00-----------6.00--------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................AGGGTTTTTTTGTTTGCTC.....................................................................197.000.00-----------7.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................GGGTTTTTTTGTTTGTTTTTCTGG...............................................................245.000.00-----------2.00--------3.00--------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................GGGTTTTTTTGTTTGTTTTTTTGGCT.............................................................263.000.00-----------2.00--------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................GGGTTTTTTTGTTTGTTTTTTTGGTC.............................................................263.000.00-----------3.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................AGGGTTTTTTTGTTTGAC......................................................................182.000.00-----------2.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................AGGAGGGTTTTTTTGTTTTGCT.....................................................................222.000.00--------------------2.00--------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................AGGAGGGTTTTTTTGTTTGTTTTCTT.................................................................262.000.00-----------1.00--------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................AGGAGGGTTTTTTTGTTTGTTCTT...................................................................242.000.00--------------------2.00--------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................TTTTTTGTTTGTTTTTTTAATGGC...........................................................242.000.00-----------2.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................AGGGTTTTTTTGTTTGTTTTCTC.................................................................231.000.00--------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................ATCTGCTTTTGTTTTTCGAT...........................................................................................................................................201.000.00------------------------------------------------------------------------------------------------------------------1.00----------------------------------------------------
..................................................................................................................................................................AGGGTTTTTTTGTTTGTTTTTCTGT...............................................................251.000.00--------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................CAATGAAATTTCTGATAAAGCTTG..................................................................................................................2411.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------1.00-----------------
..................................................................................................................................................................AGGGTTTTTTTGTTTGTTTTAACT................................................................241.000.00--------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................GGTTTTTTTGTTTGTTTTTTTAATC.............................................................251.000.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................AGGGTTTTTTTGTTTGTTTTTCGG................................................................241.000.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................AGGGTTTTTTTGTTTGTTTTGC..................................................................221.000.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................GGGTTTTTTTGTTTGTTTTTTTAATC.............................................................261.000.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................AAGGAGGGTTTTTTTGTTTGTTTCTGC.................................................................271.000.00--------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................AGGGTTTTTTTGTTTGTTTTCTGG................................................................241.000.00--------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
..TATATCTTTTTTAATTATA.....................................................................................................................................................................................................................................191.000.00------------------------------------------------------------------------------------------------------------------1.00----------------------------------------------------
..................................................................................................................................................................AGGGTTTTTTTGTTTGTCTGC...................................................................211.000.00--------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................AGGAGGGTTTTTTTGTTTGTTTTTTT.................................................................2611.001.00--------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................AGGGTTTTTTTGTTTGTTTTTGG.................................................................231.000.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................CAATGAAATTTCTGATAAAG......................................................................................................................2011.001.00-------------------------------------------------------------------------------------------------------------------------------1.00---------------------------------------
....................................................................TTACCGAACAAATGTAGTTGAAGATCT...........................................................................................................................................................2711.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------------1.00-----------
...................................................................................................................................................................GGGTTTTTTTGTTTGTTTTTTTGGGC.............................................................261.000.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................AGGGTTTTTTTGTTTGTTCGC...................................................................211.000.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................CAACCGATTGTGAATAAGAATATG...........................................................................................................................................................................................241.000.00-----------------------------------------------------------------------------------------------------------------------------------1.00-----------------------------------
.......................................................................................................................................................................TTTTTTGTTTGTTTTTTTAACG.............................................................221.000.00--------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................TTTTTGTTTGTTTTTTTAATGGCC..........................................................241.000.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................GGGTTTTTTTGTTTGTTTAAC..................................................................211.000.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................AAGGAGGGTTTTTTTGTTTGTTTCTTT.................................................................271.000.00--------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................AGGAGGGTTTTTTTGTTTGTTTTTGCC................................................................2721.000.50-----------0.50--------0.50--------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................AGGGTTTTTTTGTTTGTTTTTTTGGTT.............................................................271.000.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................AGGGTTTTTTTGTTTGTTTTTTTCGAG.............................................................271.000.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................AGGGTTTTTTTGTTTCTTC.....................................................................191.000.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................AGGGTTTTTTTGTTTGTTTTCTG.................................................................231.000.00--------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................AGGGTTTTTTTGTTTGCCTA....................................................................201.000.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................AAGGAGGGTTTTTTTGTTTGTCC.....................................................................231.000.00--------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................AGGGTTTTTTTGTTTGTTTTTCTG................................................................241.000.00-----------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................AAGGAGGGTTTTTTTGTTTGTTTC....................................................................241.000.00--------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................AGGAGGGTTTTTTTGTTTGTTTTTCT.................................................................2620.500.50-----------0.50-----------------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................AATAAGGAGGGTTTTTTTG............................................................................1920.500.500.50----------------------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................AGGAGGGTTTTTTTGTTTGTTTTT...................................................................2420.500.50-----------0.50-----------------------------------------------------------------------------------------------------------------------------------------------------------

Antisense strand
AGTATATCTTTTTTAATATCATCACATATGTACTTGTTACAACCGATTGTGAATAAGAATATTCTGGATTACCGAACAAATGTAGTTGAAGATCTGCTTTTGTTTTTTAGACCAATGAAATTTCTGATAAAGCTTGATTATAGTTCATATGTTTAAATAAGGAGGGTTTTTTTGTTTGTTTTTTTAATACCTTCTTGAAGGTGTGGTGCTTATTTCCCTGGCACTATGTGCAGATGCCGTCATTGGAAAT
.......................................................................................(((((...((((((.((.(((((((..(((((.....((((........))))...)))))..))))))).)).)))))).))))).............................................................................
......................................................................................87.......................................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR029124(GSM416753)
HeLa. (hela)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR038855(GSM458538)
D10. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR037938(GSM510476)
293Red. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577740(Rovira)
total RNA. (breast)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR037936(GSM510474)
293cand1. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
TAX577579(Rovira)
total RNA. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR040031(GSM532916)
G013T. (cervix)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040039(GSM532924)
G531T. (cervix)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
GSM532878(GSM532878)
G691T. (cervix)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
TAX577588(Rovira)
total RNA. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR038854(GSM458537)
MM653. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR038857(GSM458540)
D20. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
GSM532886(GSM532886)
G850T. (cervix)
SRR029127(GSM416756)
A549. (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR040040(GSM532925)
G612N. (cervix)
GSM532889(GSM532889)
G576N. (cervix)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
GSM532883(GSM532883)
G871N. (cervix)
SRR029129(GSM416758)
SW480. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR029128(GSM416757)
H520. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR040038(GSM532923)
G531N. (cervix)
SRR038860(GSM458543)
MM426. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR038856(GSM458539)
D11. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM532872(GSM532872)
G652T. (cervix)
SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)
SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)
SRR040018(GSM532903)
G701N. (cervix)
SRR191488(GSM715598)
14genomic small RNA (size selected RNA from t. (breast)
SRR040030(GSM532915)
G013N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR040010(GSM532895)
G529N. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR038858(GSM458541)
MEL202. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
GSM532890(GSM532890)
G576T. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
GSM532887(GSM532887)
G761N. (cervix)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)
SRR040027(GSM532912)
G220T. (cervix)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)
SRR191465(GSM715575)
113genomic small RNA (size selected RNA from . (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
.................................................................................................................................................................................GTTTTTTTAATACCTTCA....................................................... 181470.000.00479.00310.0069.0016.009.0025.0027.0048.0035.0023.0019.00--8.004.0012.0010.008.0015.0015.00-12.0018.003.007.002.0011.003.0012.0010.00-2.009.005.0010.007.00-9.006.005.0012.003.004.007.006.005.005.004.00-8.008.007.003.004.005.001.006.005.004.005.006.006.004.006.002.004.004.002.002.001.00-4.002.001.004.002.002.002.00-2.00---2.002.001.002.00--2.001.002.001.002.002.00-2.002.00-1.00-1.00-2.00---2.001.00-1.00-1.001.00---1.00-----1.001.00---1.00------1.001.00--1.00-1.00-1.001.00-1.001.00----1.00----1.001.00-1.001.001.00----
.................................................................................................................................................................................GTTTTTTTAATACCTTCATT..................................................... 20579.000.00134.0046.0018.0075.0038.0010.0011.001.0012.0013.006.00-20.0010.0013.0010.003.005.003.006.00-2.002.006.0010.009.004.004.005.006.00-5.004.00-1.003.0012.00-1.004.00----1.00-4.001.008.00--1.004.001.00-4.00-1.002.001.00--1.00--1.00-1.00--2.00-1.001.00-2.00--2.001.00----1.00--2.00--1.00----2.00--1.00---2.00--2.00---2.00-2.00-1.00--1.00---1.001.00----1.00----------1.001.00-1.00----1.00--1.00-------1.00--1.00-------
.................................................................................................................................................................................GTTTTTTTAATACCTTCAT...................................................... 19513.000.0081.0077.0038.007.0029.0023.0027.0014.0012.009.009.00-17.007.009.005.007.003.003.001.00-3.002.008.002.004.004.007.001.002.00-5.002.004.002.00--4.003.003.00-2.002.001.002.004.00-2.00-----1.001.002.001.00-1.001.00--1.00-3.00-1.001.003.004.00-1.001.002.00--2.002.001.00-3.003.003.001.00--1.00-3.001.001.001.00-------1.00-1.00--2.00-2.00-1.00---1.00--1.00--1.001.00--1.00--1.00---1.001.00---1.00-------1.00--------1.00-1.001.00------------
.................................................................................................................................................................................GTTTTTTTAATACCTTCAC...................................................... 1963.000.00-6.003.003.00-8.00----6.00--6.00---3.002.00--3.00---3.00-4.00-----5.001.00------2.003.002.00----------1.00--1.00--------------1.00----------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTTCATA..................................................... 2050.000.0012.00-3.00-5.003.00---3.003.00--1.001.001.001.00----1.00---------3.00-1.00--1.00----1.00--1.00--1.00----1.00--------------1.00--2.00--1.00----1.00---------------------1.00---------1.00--------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTTCACC..................................................... 2014.000.00--1.00-------2.00------4.00-----------------3.00-----1.00----------------------------1.00----------------1.00------------1.00------------------------------------------------------------------
................................................................................................................................................................................TGTTTTTTTAATACCTTTC....................................................... 1912.670.00------------------------------12.67----------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTCAT....................................................... 189.000.001.002.00----1.00---------1.00-------1.00-------------2.00--1.00-----------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTTCATC..................................................... 208.000.001.00--------1.00----1.00---------------4.00------------------------------------------------------------------------------------1.00---------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTCATT...................................................... 196.000.001.00---------------2.00------1.00-2.00---------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TTTTTTTAATACCTTGCA...................................................... 186.000.005.00--------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTTCC....................................................... 185.000.001.00----------------1.001.00-------------------------------------------------------------------------1.00---------------------------------------------------------1.00----------------
.................................................................................................................................................................................GTTTTTTTAATACCTTCACA..................................................... 204.000.00----------1.00----------------1.00--------------1.00----------1.00-----------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTTCACT..................................................... 203.000.001.00--1.00----------------------------------------------------------------------------------------------1.00--------------------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTTTATT..................................................... 203.000.002.00------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTTCAAA..................................................... 203.000.002.00----------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTCA........................................................ 173.000.00-------------------------------------------------------------------------------------2.00------1.00--------------------------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTTCG....................................................... 182.000.001.00------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTTGA....................................................... 182.000.002.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................AAGGTATTAAAAAAACAA......................................................... 1841.751.751.00-----0.50-----------------------------------0.25----------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................TTGTTTTTTTAATACCTTTTT...................................................... 211.250.000.25---0.50---------0.25-------------------------------------------------------------------------------0.25------------------------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTTTAG...................................................... 191.000.00----------------------------------------------------------------1.00------------------------------------------------------------------------------------------------------
..............ATATGTGATGATATT............................................................................................................................................................................................................................. 1501.001.00------------------------------------------------------------------------------------------------------------------------------------1.00----------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTTCAG...................................................... 191.000.00--1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTTCAGA..................................................... 201.000.00-------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................GGATTACCGAACAAACCA....................................................................................................................................................................... 181.000.00------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTTCAGT..................................................... 201.000.00---1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTTCAA...................................................... 191.000.00--------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTCATA...................................................... 191.000.00-----------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TTTTTTTAATACCTTGCC...................................................... 181.000.00-------------------------------------------------------------------------------------------------------------------------------------1.00---------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTTCCT...................................................... 191.000.00---------------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TTTTTTTAATACCTTGTAT..................................................... 191.000.001.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTTTATG..................................................... 201.000.001.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTTTTTTTAATACCTCCTT...................................................... 191.000.00-----------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................TTGTTTTTTTAATACCTTTT....................................................... 200.750.000.25---0.25--------------------------------------------------------------------------------------------------------------------------------------------------------------0.25---
................................................................................................................................................................................AAGGTATTAAAAAAACA......................................................... 1760.670.67-----------------------------------------------------0.17--------------------------------------------------------------------------------------------------------------0.170.170.17
................................................................................................................................................................................TGTTTTTTTAATACCTTTTT...................................................... 200.500.000.50----------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................AAGGTATTAAAAAAACAAA......................................................... 1920.500.50--------------0.50--------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................TTTGTTTTTTTAATACCTTTTC...................................................... 220.500.00---------------------------------------------------------------------------------------------0.50-------------------------------------------------------------------------
..............................................................................................................................................................................TTTGTTTTTTTAATACCTTAA....................................................... 210.500.00----------------------------0.50------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................TTGTTTTTTTAATACCTTTTAA..................................................... 220.250.00------0.25----------------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................TTGTTTTTTTAATACCTTCCA...................................................... 210.250.00--------------------------------0.25--------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGTTTTTTTAATACCTTTT....................................................... 190.170.00---0.17-------------------------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGTTTTTTTAATACCTTT........................................................ 180.170.000.17----------------------------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGTTTTTTTAATACCTTTTC...................................................... 200.170.00---------------------0.17-------------------------------------------------------------------------------------------------------------------------------------------------