ID: uc003mtz.4
GENE: WRNIP1(5)
chr6:2784358-2784607+


(3)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(3)
B-CELL 		(4)
BRAIN 		(6)
BREAST 		(25)
CELL-LINE 		(4)
HEART 		(2)
HELA 		(1)
LIVER 		(2)
OTHER 		(13)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CACCACACAGTAACCACTCTCAATATTTCTTGCATAAGTTCATGGGATCAGAGACTAGAGCTAAGTCAGGCTGTTTTGCTACATGGGATTGTTTTGGTCACCAAGTGTACAAGCAGTGGTGGTCTGTGGTCGCCTGCACATAGGCCAGGAGGACAGTGTGTGTCATGACTGAAACTCTCCTTTGTCTCTGTGTGTGGCAGGTCTGGCAGACCCGTCTGCGTTAACACAAGCGGTTGCTGCCTACCAAGGC
...................................................................................................................................(((.(((((((((...((((((.(((....((....))....))).))))))...))))))))))))....................................................
............................................................................................................................125........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR191472(GSM715582)
120genomic small RNA (size selected RNA from . (breast)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR029125(GSM416754)
U2OS. (cell line)
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGTGGC....................................................231114.00114.0038.009.0014.0011.003.003.006.004.005.003.003.00---3.001.00-2.001.002.00--1.00-1.00--1.00---------1.00-----------1.00---------1.00------
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGTGG.....................................................22113.0013.0011.00-1.00---------------1.00-----------------------------------------------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGCA...................................................2219.009.00--1.00--2.00-----------------1.00-1.00----------1.00-----1.00-----------1.00--------1.00--
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGCAGT.................................................2416.002.00--1.001.00--------1.00--1.00-------------1.00---------------------1.00--------------
.................................................................................................................................TCGCCTGCACATAGGCCAGGAGGA.................................................................................................2415.005.00-4.00-----------------------------------------------------1.00----------
......................................................................................................................................TGCACATAGGCCAGGAGGACAGT.............................................................................................2314.004.00-4.00----------------------------------------------------------------
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGTGGCA...................................................2413.003.00-----1.00-------1.00----------------------------------------------1.00-----
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGGCAG....................................................232.000.00-2.00----------------------------------------------------------------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGC....................................................2112.002.001.00-------------------------------------1.00---------------------------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGCAG..................................................2312.002.00-----1.00-------------------------1.00----------------------------------
..................................................................................ATGGGATTGTTTTGGTCACCA...................................................................................................................................................2112.002.00-------------------------------------------1.00------------1.00---------
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGTGGT....................................................2312.0013.001.00----------------------------------------1.00------------------------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGCAT..................................................2312.009.00---------------------1.00-----------------------1.00--------------------
.................................................................................................................................TCGCCTGCACATAGGCCAGGAG...................................................................................................2212.002.00----2.00-------------------------------------------------------------
....................................................................................................................................................................................TTTGTCTCTGTGTGTGGCAGT.................................................212.000.00--------------------2.00---------------------------------------------
......................................................................................................................................TGCACATAGGCCAGGAGGACAGTTAGA.........................................................................................2712.004.00--2.00---------------------------------------------------------------
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGGGGC....................................................232.000.002.00-----------------------------------------------------------------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGCATT.................................................2412.009.00-2.00----------------------------------------------------------------
................................................................................................................................................................................................................................CACAAGCGGTTGCTGCCTA.......1912.002.00----2.00-------------------------------------------------------------
...........................................................................................................................................................GTGTGTGTCATGACTGAAAC...........................................................................2011.001.00-----------------------------------------------------1.00------------
...................................................................................................................GTGGTGGTCTGTGGTCGC.....................................................................................................................1811.001.00------------1.00-----------------------------------------------------
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGTG......................................................2111.001.00--1.00---------------------------------------------------------------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGCAGTT................................................2511.002.00------------1.00-----------------------------------------------------
.............................................................................................................................................................................ACTCTCCTTTGTCTCTGTGTGTGGC....................................................2511.001.00------------------------------------------------1.00-----------------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGCAGG.................................................2411.001.00--1.00---------------------------------------------------------------
................................................................................................................................................................................CTCCTTTGTCTCTGTGTGTGG.....................................................2111.001.00-------------------------------------------------------------1.00----
...................................................................................................................................................................................CTTTGTCTCTGTGTGTGGCAGA.................................................221.000.00-------------1.00----------------------------------------------------
.........................................................................................................................................................................................................TCTGGCAGACCCGTCTG................................1711.001.00---------------------------------------1.00--------------------------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTTGC....................................................211.000.001.00-----------------------------------------------------------------
.....................................................................................................CAAGTGTACAAGCAGAATC..................................................................................................................................191.000.00----------------------------------------1.00-------------------------
..................................................GAGACTAGAGCTAAGTCAGGCTGTT...............................................................................................................................................................................2511.001.00---------------------------------------------------------1.00--------
...................................AAGTTCATGGGATCAGAGACTAG................................................................................................................................................................................................2311.001.00------------------------------1.00-----------------------------------
..................................................................................................................................................AGGAGGACAGTGTGTGTGTGC...................................................................................211.000.00--------------------------------------------1.00---------------------
................................................................................................................................................................................CTCCTTTGTCTCTGTGTGTGGCA...................................................2311.001.00-------1.00----------------------------------------------------------
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGTGGCAT..................................................2511.003.00----------1.00-------------------------------------------------------
.......................................................................................................AGTGTACAAGCAGTGGT..................................................................................................................................1711.001.00-----------------------------------1.00------------------------------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGCAGTC................................................2511.002.00----------------------------------------------------1.00-------------
.................................................................................................................................................................................................GTGGCAGGTCTGGCAGACC......................................1911.001.00----------------1.00-------------------------------------------------
..................................................................................................................................................................................CCTTTGTCTCTGTGTGTGGCAT..................................................221.000.00--------------------------------------------------------------1.00---
............................................................................TGCTACATGGGATTGTTTTGGTCACCAA..................................................................................................................................................2811.001.00----------------------------------------------1.00-------------------
....................................AGTTCATGGGATCAGAGACTAGA...............................................................................................................................................................................................2311.001.00---------------------------------1.00--------------------------------
..................................................................................................................................CGCCTGCACATAGGCCAGGAGGATACT.............................................................................................2711.001.00----------------------------------1.00-------------------------------
...................................................................................................................................................................................CTTTGTCTCTGTGTGTGGCAGT.................................................221.000.00----------------------------1.00-------------------------------------
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGTGGCTT..................................................2511.00114.00-----------------------------------------------1.00------------------
....................................................................................................................................................................................TTTGTCTCTGTGTGTGGCA...................................................1911.001.00---------1.00--------------------------------------------------------
..................................................GAGACTAGAGCTAAGTCAGG....................................................................................................................................................................................2011.001.00--------------------------------1.00---------------------------------
....................................................................................................................................................................................................................................AGCGGTTGCTGCCTACCAA...1911.001.00----------------------------------------------------------1.00-------
..................................................................................................................................................AGGAGGACAGTGTGTGTCATG...................................................................................2111.001.00----------------------------------------------------------------1.00-
..................................................................................................................................CGCCTGCACATAGGCCAGGAGGA.................................................................................................2311.001.00--------------------------------------------------1.00---------------
.........................................................GAGCTAAGTCAGGCTGTTTTGCTA.........................................................................................................................................................................2411.001.00--------------------------1.00---------------------------------------
................................................................................................................................................................................CTCCTTTGTCTCTGTGTGTGGC....................................................2211.001.00----------------1.00-------------------------------------------------
.................................................................................................................................TCGCCTGCACATAGGCCAGGAGG..................................................................................................2311.001.00-----------------------------------------------------------------1.00
..................................................................................................................................................................................CCTTTGTCTCTGTGTGTGGCAGT.................................................231.000.00-------------1.00----------------------------------------------------

Antisense strand
CACCACACAGTAACCACTCTCAATATTTCTTGCATAAGTTCATGGGATCAGAGACTAGAGCTAAGTCAGGCTGTTTTGCTACATGGGATTGTTTTGGTCACCAAGTGTACAAGCAGTGGTGGTCTGTGGTCGCCTGCACATAGGCCAGGAGGACAGTGTGTGTCATGACTGAAACTCTCCTTTGTCTCTGTGTGTGGCAGGTCTGGCAGACCCGTCTGCGTTAACACAAGCGGTTGCTGCCTACCAAGGC
...................................................................................................................................(((.(((((((((...((((((.(((....((....))....))).))))))...))))))))))))....................................................
............................................................................................................................125........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR191472(GSM715582)
120genomic small RNA (size selected RNA from . (breast)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR029125(GSM416754)
U2OS. (cell line)
.........................................................................TTTTGCTACATGGGATTGTT............................................................................................................................................................. 201.000.00-----------1.00------------------------------------------------------
.........................................................................TTTTGCTACATGGGATTGTTAG........................................................................................................................................................... 221.000.00-----------1.00------------------------------------------------------
...........................................................................AAACAATCCCATGTAGCAA............................................................................................................................................................ 1911.001.00-----------1.00------------------------------------------------------