ID: uc003msx.2_intron_6_0_chr6_348842_f.3p
GENE: (7)
chr6:350622-350871+


(5)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(6)
CELL-LINE 		(5)
HEART 		(5)
LIVER 		(8)
OTHER 		(1)
RRP40.ip 		(10)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCATCCGTCTACAGCTAAAACAATTTGCCAATAAAGTACATGTTTTTCCTAAGCCAAAAATAAATACGTTAACAGAAAAATGATTTAGGATATAGCTTGAATGCTTAAATATGTGCACCTTTACAAACCTCTCAGTGTATTCTTGGAGTTCTTGAAATGTTGTTTTAATATTTGTTGCCAGTAATGTTCTTTCTTCACAGCCGCTCCGGGAATTCTGAAGTTCTGGGCCTTTCTCAGAAGACTGTAATGT
...............................................................................................................((.(((...........((((.((......)).))))......((((((((...))))))))..)))))......................................................................
..............................................................................................................111............................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR553576(SRX182782)
source: Testis. (testes)		SRR343334SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343337SRR343335SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR343336SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784SRR189783SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189787SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
...................................................................................................................CACCTTTACAAACCTCTCA....................................................................................................................19116.0016.00--5.00-5.003.00--3.00-----------------------------------
...................................................................................................................................................................TTTAATATTTGTTGCCAGTAATG................................................................2314.004.004.00-------------------------------------------
.......................................................................................................CTTAAATATGTGCACCTTTACAAACCTCTCAG...................................................................................................................3214.004.001.00---------1.002.00--------------------------------
.......................................................................ACAGAAAAATGATTTAGGATATA............................................................................................................................................................2313.003.00---1.00-----1.00----------1.00-----------------------
.......................................................................................................CTTAAATATGTGCACCTTTACAAACCTCTCA....................................................................................................................3113.003.003.00-------------------------------------------
.....................................................................................................................................................................................................................TCTGAAGTTCTGGGCCTTTCTCAGA............2513.003.00-3.00------------------------------------------
......................................................................AACAGAAAAATGATTTAGGATATAGCT.........................................................................................................................................................2712.002.00-------------------------------1.00--------1.00---
....................................................................................................................ACCTTTACAAACCTCTC.....................................................................................................................1712.002.00--1.00--1.00--------------------------------------
...................................................................................................................................................................TTTAATATTTGTTGCCAGTAAT.................................................................2212.002.002.00-------------------------------------------
..................................................................................................................................................................TTTTAATATTTGTTGCCAGTA...................................................................2112.002.002.00-------------------------------------------
................................................................................................................................................................................................................................GGGCCTTTCTCAGAAGACTGTAA...2311.001.00-----------------------------1.00--------------
....................................................................................................................................................................TTAATATTTGTTGCCAGTAATG................................................................2211.001.001.00-------------------------------------------
.................................................................................................................................................................................................................................GGCCTTTCTCAGAAGACTGTAATG.2411.001.00-----------------------1.00--------------------
.................................................................................................................................................................................................TTCACAGCCGCTCCGTTA.......................................181.000.00---------1.00----------------------------------
................................................................................TGATTTAGGATATAGCTTGAATGCT.................................................................................................................................................2511.001.00-1.00------------------------------------------
.......TCTACAGCTAAAACAATTTGCCAAAAG........................................................................................................................................................................................................................271.000.00----------1.00---------------------------------
.......................................................................................................CTTAAATATGTGCACCTTTACAAACCTCTC.....................................................................................................................3011.001.001.00-------------------------------------------
................................................................................TGATTTAGGATATAGCTTGAA.....................................................................................................................................................2111.001.00-------------1.00------------------------------
........................................................................................................................TTACAAACCTCTCAGTGTATTCTTGG........................................................................................................2611.001.00-----------------------------------1.00--------
...............................................................................ATGATTTAGGATATAGCTTG.......................................................................................................................................................2011.001.00------------------------------------1.00-------
.......................................................................................................................................................................................................................TGAAGTTCTGGGCCTTTCTCAGAAGACT.......2811.001.00---1.00----------------------------------------
.....................................................................TAACAGAAAAATGATTTAGGATATAGCT.........................................................................................................................................................2811.001.00---1.00----------------------------------------
..............................................................................................................................................TTGGAGTTCTTGAAATGTTGTTTTAATA................................................................................2811.001.00-1.00------------------------------------------
.....................................................CCAAAAATAAATACGTTAACAGA..............................................................................................................................................................................2311.001.00--------------------------------1.00-----------
.............................................................................................................................................CTTGGAGTTCTTGAAATG...........................................................................................1811.001.00----------------------1.00---------------------
........................TTGCCAATAAAGTACATGT...............................................................................................................................................................................................................1911.001.00------------1.00-------------------------------
.............................................................................AAATGATTTAGGATAGGTT..........................................................................................................................................................191.000.00--------------------------------------1.00-----
.................................................................................................................................................................................................TTCACAGCCGCTCCGGGAAT.....................................2011.001.00-------------1.00------------------------------
.............................................................................................................................................................................................................CCGGGAATTCTGAAGTTCTGG........................2111.001.00---1.00----------------------------------------
..........................................................AATAAATACGTTAACAGAAAAATGATCC....................................................................................................................................................................281.000.00------------------------1.00-------------------
...........................................................................................................................................................................................................................................AGAAGACTGTAATGTATT181.000.00--------------------------1.00-----------------
..............................................................................................................................................................................................................................CTGGGCCTTTCTCAGAAGACTGT.....2311.001.00-------------------------1.00------------------
...................................................................................................................................................................................................................................CCTTTCTCAGAAGACTGTAATG.2211.001.00------------1.00-------------------------------
...............................................................ATACGTTAACAGAAAAATGATTTAGGATA..............................................................................................................................................................2911.001.00-------------------------------------1.00------
........................................................................CAGAAAAATGATTTACTT................................................................................................................................................................181.000.00------------------------------------------1.00-
................................................................................................................................................................................................................................GGGCCTTTCTCAGAAGAC........1821.001.00-----------------------------------------1.00--
.................................................................ACGTTAACAGAAAAATGATTTAGGATA..............................................................................................................................................................2711.001.00----------------------------1.00---------------
....................................................................................................................................................................TTAATATTTGTTGCCAGTAA..................................................................2011.001.001.00-------------------------------------------
.......................................................................................................CTTAAATATGTGCACCTTTACAAACCTCT......................................................................................................................2911.001.001.00-------------------------------------------
..................................................................................................................................................................................................................................GCCTTTCTCAGAAGACTGTAA...2111.001.00------------------1.00-------------------------
........................................................................CAGAAAAATGATTTAGGATATA............................................................................................................................................................2211.001.00---------------1.00----------------------------
..................................................................................................................................................................................................................................GCCTTTCTCAGAAGACTGT.....1911.001.00---------------------------------1.00----------
.......................................................................................................CTTAAATATGTGCACCTGTAC..............................................................................................................................211.000.001.00-------------------------------------------
....................................................................................................................................CAGTGTATTCTTGGAGTTCTTGAAATGTTG........................................................................................3011.001.00------------------------------1.00-------------
..................................................................................................................................CTCAGTGTATTCTTGGAGTTCTTGAAATGTTG........................................................................................3211.001.00----------------1.00---------------------------
.....................................................................TAACAGAAAAATGATTTAGGATATAGC..........................................................................................................................................................2711.001.00-1.00------------------------------------------
...........................................................................AAAAATGATTTAGGATATAGC..........................................................................................................................................................2111.001.00---1.00----------------------------------------
......................................................................AACAGAAAAATGATTTAGGATATAGC..........................................................................................................................................................2611.001.00---------------------------1.00----------------
..........................................................................GAAAAATGATTTAGGATATA............................................................................................................................................................2020.500.50-------------------------------------------0.50
...................ACAATTTGCCAATAAAG......................................................................................................................................................................................................................1720.500.50-----0.50--------------------------------------
............................................................................................................................................................................TGTTGCCAGTAATGT...............................................................1550.400.40--------------0.200.20----------------------------
..........................................................................GAAAAATGATTTAGGATAT.............................................................................................................................................................1930.330.33---------0.33----------------------------------

Antisense strand
CCATCCGTCTACAGCTAAAACAATTTGCCAATAAAGTACATGTTTTTCCTAAGCCAAAAATAAATACGTTAACAGAAAAATGATTTAGGATATAGCTTGAATGCTTAAATATGTGCACCTTTACAAACCTCTCAGTGTATTCTTGGAGTTCTTGAAATGTTGTTTTAATATTTGTTGCCAGTAATGTTCTTTCTTCACAGCCGCTCCGGGAATTCTGAAGTTCTGGGCCTTTCTCAGAAGACTGTAATGT
...............................................................................................................((.(((...........((((.((......)).))))......((((((((...))))))))..)))))......................................................................
..............................................................................................................111............................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR553576(SRX182782)
source: Testis. (testes)		SRR343334SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343337SRR343335SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR343336SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784SRR189783SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189787SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
.............................................................................................................................................................................................TTTCTTCACAGCCGCTAAAG......................................... 204.000.00------4.00-------------------------------------
.............................................................................................................................................................................................TTTCTTCACAGCCGCTAAAA......................................... 202.000.00-----------------1.00---1.00----------------------
.............................................................................................................................................................................................TTTCTTCACAGCCGCTAA........................................... 182.000.00-------2.00------------------------------------
.............................................................................................................................................................................................TTTCTTCACAGCCGCTAAA.......................................... 192.000.00-------1.00--------------------------1.00---------
..........................................................AATAAATACGTTAACAATAG............................................................................................................................................................................ 201.000.001.00-------------------------------------------
.............................................................................................................................................................................................AGCGGCTGTGAAGAAA............................................. 1611.001.00--------------1.00-----------------------------
.............................................................................................................................................................................................TTTCTTCACAGCCGCAA............................................ 171.000.00-------------------1.00------------------------
.......................................................................................................................................................................................................AACTTCAGAATTCCCGGAGCGGC............................ 2311.001.00-1.00------------------------------------------
.................................................................................................................................................GAGTTCTTGAAATGTTG........................................................................................ 171.000.00---------------------------------------1.00----