ID: uc003mmv.1_intron_3_0_chr5_180626118_r.5p
GENE: TRIM7(1)
chr5:180626651-180626900-


(4)
BREAST 		(8)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(2)
OTHER 		(1)
SKIN 		(1)
XRN.ip

Sense strand
GCAGCCAGATCCAGGAGACAGCTCAAAAGCCTGACCTTGACTTTCTCCAGGTAAGTCTGGCTCAGCCAGGGGCTCGAGTCATTTATCCTAAGGCATCAGGACCAGCAGCTAGAGAACAGTGTCAGTCCTGGGGGGTCTAGGAGAATCACATGATCTGGAGCTGAAGGGGACTGGAGAGAAGTGCCCTGATTTTCCTGGGGTTGGAGGTCTAGAGAGATGTGAAAACTTTCTTGACTATGAGCCACAATAA
............................................................................................................(((((...(((((....((((((.....))))))....))).)).)))))............................................................................................
..................................................................................................99..........................................................159.........................................................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189782SRR040008(GSM532893)
G727N. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
.......................................................................................................AGCAGCTAGAGAACAGATG................................................................................................................................1930.000.0017.0011.00--1.00---1.00---------
........................................................................................................GCAGCTAGAGAACAGATGT...............................................................................................................................198.000.002.001.005.00---------------
.......................................................................................................AGCAGCTAGAGAACAGATGT...............................................................................................................................204.000.001.002.001.00---------------
........................................................................................................GCAGCTAGAGAACAGAATC...............................................................................................................................194.000.00---4.00--------------
......................................................................................................CAGCAGCTAGAGAACAGATG................................................................................................................................2043.750.502.250.25--0.250.50--0.25-----0.25---
.......................................................................................................AGCAGCTAGAGAACAGAT.................................................................................................................................183.000.001.002.00----------------
......................................................................................................CAGCAGCTAGAGAACAGATGT...............................................................................................................................2143.000.501.75-0.25--0.75--------0.25---
......................................................................................................CAGCAGCTAGAGAACAGA..................................................................................................................................1842.750.501.000.250.25-0.500.75------------
......................................................................................................CAGCAGCTAGAGAACGGA..................................................................................................................................181.000.00----1.00-------------
........................................................................................................................................CTAGGAGAATCACATGGTT...............................................................................................191.000.00-------------1.00----
........................................................................................................................................................................GACTGGAGAGAAGTGGAG................................................................181.000.001.00-----------------
............................................................................................................................................................GGAGCTGAAGGGGACCACA...........................................................................191.000.00-----------1.00------
.......................................................................................................AGCAGCTAGAGAACAGATGA...............................................................................................................................201.000.001.00-----------------
....................................................................................................................................................CATGATCTGGAGCTGAAGA...................................................................................191.000.001.00-----------------
......................................................................................................CAGCAGCTAGAGAACAGAT.................................................................................................................................1940.500.500.25----0.25------------
...GCCAGATCCAGGAGACA......................................................................................................................................................................................................................................1720.500.50---------------0.50--
......................................................................................................CAGCAGCTAGAGAACAG...................................................................................................................................1740.500.50----0.25---------0.25---
......................................................................................................CAGCAGCTAGAGAACA....................................................................................................................................1670.430.43-----0.43------------
...............................................................................................................................................................GCTGAAGGGGACTGGAG..........................................................................1750.400.40----------------0.40-
.CAGCCAGATCCAGGAGAC.......................................................................................................................................................................................................................................1830.330.33-----------------0.33
......................................................................................................CAGCAGCTAGAGAACAGATGA...............................................................................................................................2140.250.500.25-----------------
......................................................................................................CAGCAGCTAGAGAACAGAGG................................................................................................................................2040.250.500.25-----------------

Antisense strand
GCAGCCAGATCCAGGAGACAGCTCAAAAGCCTGACCTTGACTTTCTCCAGGTAAGTCTGGCTCAGCCAGGGGCTCGAGTCATTTATCCTAAGGCATCAGGACCAGCAGCTAGAGAACAGTGTCAGTCCTGGGGGGTCTAGGAGAATCACATGATCTGGAGCTGAAGGGGACTGGAGAGAAGTGCCCTGATTTTCCTGGGGTTGGAGGTCTAGAGAGATGTGAAAACTTTCTTGACTATGAGCCACAATAA
............................................................................................................(((((...(((((....((((((.....))))))....))).)).)))))............................................................................................
..................................................................................................99..........................................................159.........................................................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189782SRR040008(GSM532893)
G727N. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
...................................................................................................GACCAGCAGCTAGAGT....................................................................................................................................... 162.000.00------2.00-----------
.................................................................CCAGGGGCTCGAGTCATGT...................................................................................................................................................................... 191.000.00------------1.00-----
.......................................................................................................AGCAGCTAGAGAACAGTGTACT............................................................................................................................. 221.000.00----------1.00-------
.............................................................TAAATGACTCGAGCCCCTGGCTGA..................................................................................................................................................................... 2411.001.00-------1.00----------
.GTCTCCTGGATCTGGCTG....................................................................................................................................................................................................................................... 1830.330.33-------0.33----------