ID: uc003mlw.1_intron_5_0_chr5_179740965_r.3p
GENE: GFPT2(13)
chr5:179740915-179741164-


(5)
B-CELL 		(3)
BRAIN 		(5)
BREAST 		(24)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(8)
HEART 		(3)
HELA 		(1)
KIDNEY 		(8)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(14)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TGCTTGCCACAAATAGTAACACACCTTGAATGTAAGAATCAACCGAAAAGGCTGTTGAGCGAGCGTTTTCCTTTCTGAACACCCGCTGGCTGTGTCTCGGGCGCCGATTTCCCTGTAAGAGCCGGCGGTGAAGGAGGAAGGGGTTTGGGGTGGGGCCGAGGCTGGCGGAGCGCGGCACTGAGAGGGCCCCTGGGCGGCAGGCGAGACCGCGGACACCCTCCTGGCGCTGCGCTACTGTAAGGACCGCGGC
..........................................................................................................................................((((((((....(((.((((..(((.....))).)))).)))...))))))))...........................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037943(GSM510481)
293DcrTN. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR037931(GSM510469)
293GFP. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040028(GSM532913)
G026N. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR040008(GSM532893)
G727N. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
.................................................................................................................................................................................CTGAGAGGGCCCCTGTAA.......................................................18153.000.0019.0017.0016.0016.0017.006.006.009.005.003.003.003.002.002.004.002.002.00-2.001.002.001.00--1.00-1.001.00------1.00-1.001.001.00--1.00-1.00-----1.00----1.00-1.00-------1.001.00-1.00------------
.................................................................................................................................................................................CTGAGAGGGCCCCTGTAAA......................................................1977.000.0015.009.003.005.00-4.008.003.005.002.003.004.00-3.00--1.00-1.00-1.001.00---2.001.001.00-----1.00-1.00--------------1.00----------1.00--------1.00---------
.................................................................................................................................................................................CTGAGAGGGCCCCTGAAAA......................................................196.000.002.00----3.00---------------------------------------------------------------1.00----------
.................................................................................................................................................................................CTGAGAGGGCCCCTGTA........................................................176.000.00---------3.001.00----------------------------1.00------1.00---------------------------------
.................................................................................................................................................................................CTGAGAGGGCCCCTGTACA......................................................193.000.001.00----1.00------------------------------------------------------------------1.00-------
.................................................................................................................................................................................CTGAGAGGGCCCCTGTAGA......................................................193.000.00------------3.00-------------------------------------------------------------------
.................................................................................................................................................................................CTGAGAGGGCCCCTGTAAT......................................................193.000.00-1.002.00-----------------------------------------------------------------------------
.................................................................................................................................................................................CTGAGAGGGCCCCTGTAC.......................................................183.000.00-------------------2.00----1.00-------------------------------------------------------
..............................................................................................................................................................AGGCTGGCGGAGCGCTCT..........................................................................182.000.00--------------------------------1.00------------------1.00----------------------------
.................................................................................................................................................................................CTGAGAGGGCCCCTGTTAA......................................................192.000.00----------------1.00----1.00----------------------------------------------------------
.......................................................................................................................................................................................................GGCGAGACCGCGGACACCCTCCT............................2311.001.00---------1.00----------------------------------------------------------------------
....................................................................................................................................GGAGGAAGGGGTTTGGGGAGTT................................................................................................221.000.00-----------------------------------------------1.00--------------------------------
...........................................................CGAGCGTTTTCCTTTTTCT............................................................................................................................................................................191.000.00----------------------------------------1.00---------------------------------------
....................................................................................................................................GGAGGAAGGGGTTTGGAGAG..................................................................................................201.000.00------------------------------------------------1.00-------------------------------
.......................CCTTGAATGTAAGAATCAACCGAAAAGGC......................................................................................................................................................................................................2911.001.00----------------------------------------------------1.00---------------------------
.......................................................................................GGCTGTGTCTCGGGCGGCGT...............................................................................................................................................201.000.00----------------------1.00---------------------------------------------------------
.................................................................................................................................................................................CTGAGAGGGCCCCTGTACC......................................................191.000.00--------1.00-----------------------------------------------------------------------
.................................................................TTTTCCTTTCTGAACACCCGCTGGC................................................................................................................................................................2511.001.00-----------------1.00--------------------------------------------------------------
..........................................................................................................................................................................................................................TCCTGGCGCTGCGCTACTGTCC..........221.000.00-----------------------------------------------------------1.00--------------------
.........................TTGAATGTAAGAATCAACCGAAAAGGC......................................................................................................................................................................................................2711.001.00-----------------1.00--------------------------------------------------------------
.................................................................................................................................................................................CTGAGAGGGCCCCTGTGGA......................................................191.000.00-----------------------------------------------------------------------1.00--------
......................................................................................TGGCTGTGTCTCGGGCGGCGT...............................................................................................................................................211.000.00----------------------1.00---------------------------------------------------------
.....................................ATCAACCGAAAAGGCTGTTGAGCGAGC..........................................................................................................................................................................................2711.001.00-----------------1.00--------------------------------------------------------------
.......................................................................................................................................................................................................GGCGAGACCGCGGACTGAG................................191.000.00---------------1.00----------------------------------------------------------------
..............................................................................................................................................................AGGCTGGCGGAGCGCTCC..........................................................................181.000.00-------------------------------------------------------1.00------------------------
..............................................................................ACACCCGCTGGCTGTAACA.........................................................................................................................................................191.000.00---------------1.00----------------------------------------------------------------
.................................................................................................................................................................................CTGAGAGGGCCCCTGTAT.......................................................181.000.00------------------1.00-------------------------------------------------------------
.................................................................................................................................................................................CTGAGAGGGCCCCTGTAG.......................................................181.000.00---------1.00----------------------------------------------------------------------
............................................GAAAAGGCTGTTGAGCGAGCGTT.......................................................................................................................................................................................2311.001.00------------------------------------------------------------------1.00-------------
......................................TCAACCGAAAAGGCTGTTGAGCGAGC..........................................................................................................................................................................................2611.001.00-----------------1.00--------------------------------------------------------------
.............................................................................................................................................................GAGGCTGGCGGAGCGGTCA..........................................................................191.000.00---------------------------------------------------------------1.00----------------
..............................................................................................................................................................AGGCTGGCGGAGCGCTGA..........................................................................181.000.00------------------------------------------1.00-------------------------------------
........................................................................................................................................................................AGCGCGGCACTGAGAGGG................................................................1811.001.00---------------------------------------------1.00----------------------------------
....................................................................................................................................GGAGGAAGGGGTTTGGGGTGGG................................................................................................2211.001.00--------------------------------------------1.00-----------------------------------
.....................................................................CCTTTCTGAACACCCGCTGGCTGT.............................................................................................................................................................2411.001.00------------------------------------------------------------1.00-------------------
....................................................................TCCTTTCTGAACACCCGC....................................................................................................................................................................1811.001.00------------------------------1.00-------------------------------------------------
.....................................................................CCTTTCTGAACACCCGCTGGCAGA.............................................................................................................................................................241.000.00--------------------------------------------------------------------1.00-----------
..........................................................................................................ATTTCCCTGTAAGAGCCGGCGG..........................................................................................................................2211.001.00----------------------------------------------------------1.00---------------------
.................................................................................................................................................................................CTGAGAGGGCCCCTGGAAAA.....................................................201.000.00-1.00------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................TGTAAGGACCGCGGC1511.001.00----------------------------1.00---------------------------------------------------
............................................................................................................................................................CGAGGCTGGCGGAGCG..............................................................................1620.500.50-----------------------------0.50--------------------------------------------------
........................................................................................................................................................................................................................................TACTGTAAGGACCGC...1520.500.50----------------------------0.50---------------------------------------------------
................................................................................................................................................TTGGGGTGGGGCCGAG..........................................................................................1630.330.33----------------------------------------------------------------------------0.33---
.............................................AAAAGGCTGTTGAGC..............................................................................................................................................................................................1570.140.14-------------------------------------------------------------------------------0.14

Antisense strand
TGCTTGCCACAAATAGTAACACACCTTGAATGTAAGAATCAACCGAAAAGGCTGTTGAGCGAGCGTTTTCCTTTCTGAACACCCGCTGGCTGTGTCTCGGGCGCCGATTTCCCTGTAAGAGCCGGCGGTGAAGGAGGAAGGGGTTTGGGGTGGGGCCGAGGCTGGCGGAGCGCGGCACTGAGAGGGCCCCTGGGCGGCAGGCGAGACCGCGGACACCCTCCTGGCGCTGCGCTACTGTAAGGACCGCGGC
..........................................................................................................................................((((((((....(((.((((..(((.....))).)))).)))...))))))))...........................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037943(GSM510481)
293DcrTN. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR037931(GSM510469)
293GFP. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040028(GSM532913)
G026N. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR040008(GSM532893)
G727N. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
........................................................................................................................................................................................................GAGGGTGTCCGCGGTCTCGC.............................. 2011.001.00-------------------------------------------------------------------------1.00------
................................................................................................AGGGAAATCGGCGCCCGA........................................................................................................................................ 1811.001.00-----------------------------------------------------1.00--------------------------
.......................................................................................................................................GGAAGGGGTTTGGGGTCAG................................................................................................ 191.000.00---------------------------------------------------------1.00----------------------
..............................................................................AGACACAGCCAGCGGGTGT......................................................................................................................................................... 1911.001.00--------------------------------------------------------------1.00-----------------
...............................................................................................................................................................................................................GCGCAGCGCCAGGAGGGTGTCCGCG.................. 2511.001.00-----------------------1.00--------------------------------------------------------
.................................................................................................................................................................................................................AGCGCAGCGCCAGGAGGGTGTCCG................. 2411.001.00-----------------------1.00--------------------------------------------------------
..........................................................................................................................................................................GGGGCCCTCTCAGTGCCGCG............................................................ 2011.001.00-----------------------------1.00--------------------------------------------------
..........................................................................................................................................................................................................................GTAGCGCAGCGCCAGGA............... 1711.001.00-------------------------------1.00------------------------------------------------
.............................................................................................................................CCCCTTCCTCCTTCACCG........................................................................................................... 1820.500.50--------------------------------------------------------------------------0.50-----
............................................................................................................................CCCCTTCCTCCTTCACCGC........................................................................................................... 1920.500.50---------------------------------------------------------------------------0.50----
..........................................................................................................................................................................................CCTGCCGCCCAGGGG................................................. 1560.170.17-----------------------------------------------------------------------------0.17--
.................CATTCAAGGTGTGTT.......................................................................................................................................................................................................................... 1570.140.14------------------------------------------------------------------------------0.14-