ID: uc003mls.3_intron_5_0_chr5_179674511_r.3p
GENE: (6)
chr5:179674461-179674710-


(9)
CELL-LINE 		(2)
CERVIX 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(1)
SKIN

Sense strand
TTTGGCACTAAAACCCCAGATTGCTACAAACCGAAGGCTAAAATAGAGGTCAGCAATCATTCATATTGTGTAAAATGTCACCCTTAGCTAGCAATTTATTTTTCCATATTTGTGTGTTTAGTGCACTGTTAGAATTCCTTTTCCTCACTTTTGTTTTGTTCATGGCACTTCATAATTTTATCATTTCATTTTATTTTCAGTTGATATCTGGTCAGTGGGTTGCATCATGGGAGAGCTGGTGAAAGGTTGT
................................................................................................................((((...(((((..((.((((((.................))))))..))..))))).))))............................................................................
...........................................................................................................108.................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR189785SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040008(GSM532893)
G727N. (cervix)
.....................................................................................................................................................................CACTTCATAATTTTATCATTTCA..............................................................23145.0045.0028.0014.003.00-------------
.....................................................................................................................................................................CACTTCATAATTTTATCATTTCATTTTCAG.......................................................3016.000.006.0010.00--------------
.....................................................................................................................................................................CACTTCATAATTTTATCATTTTCAG............................................................2510.000.005.004.00---1.00----------
.....................................................................................................................................................................CACTTCATAATTTTATCATTTCATTTTATTTCAG...................................................3419.001.002.005.00--1.001.00----------
....................................................................................................................................................................................TCATTTCATTTTATTTTCTATT................................................225.000.003.00-2.00-------------
.....................................................................................................................................................................CACTTCATAATTTTATCATTTCATTTTATTCAG....................................................334.000.001.00---2.001.00----------
.....................................................................................................................................................................CACTTCATAATTTTATCATTTCCAG............................................................254.000.003.001.00--------------
....................................................................................................................................................................................TCATTTCATTTTATTTCTTG..................................................204.000.002.002.00--------------
.....................................................................................................................................................................CACTTCATAATTTTATCATTTTCAA............................................................253.000.001.002.00--------------
....................................................................................................................................................................................TCATTTCATTTTATTTTCTG..................................................203.000.001.001.001.00-------------
....................................................................................................................................................................................TCATTTCATTTTATTTTCATTTA...............................................233.000.00--2.001.00------------
......................................................................................................................................................................ACTTCATAATTTTATCATTTCATTTTATTTTCAG..................................................3412.002.00-1.00--1.00-----------
..........................................................................................................................................................................CATAATTTTATCATTTCATTTTATTTTCAG..................................................3012.002.00-1.001.00-------------
.......................................................................................................................................................................................................................TGGGTTGCATCATGGGAGAGCTGGCG.........262.000.00------2.00---------
................................................................................................................................................................CATGGCACTTCATAATTTTATCATTTCA..............................................................2812.002.00--2.00-------------
.....................................................................................................................................................................................CATTTCATTTTATTTTCAG..................................................1931.331.330.67---0.67-----------
...............................................................................................................................................CTCACTTTTGTTTTGTTCATGG.....................................................................................2211.001.00--------1.00-------
.................................................................................................................................................................ATGGCACTTCATAATTCACT.....................................................................201.000.00------------1.00---
.....................................................................................................................................................................................................................AGTGGGTTGCATCATGGGAGAGC..............2311.001.00-------------1.00--
................................................................................................................TGTGTTTAGTGCACTGTTAGAATTC.................................................................................................................2511.001.00--------------1.00-
................................................................................................................................TTAGAATTCCTTTTCCTCACTTTTGTTTCGT...........................................................................................311.000.00---1.00------------
.....................................................................................................................................................................CACTTCATAATTTTATCATTTCATTTTATTTTTT...................................................3411.001.00----1.00-----------
...................................................................................................................................................................................ATCATTTCATTTTATTCTA....................................................191.000.00--1.00-------------
........................................................................................................................................................................TTCATAATTTTATCATTTAG..............................................................201.000.00-----------1.00----
..............................................................................................................................................................TTCATGGCACTTCATAATTTTATCATTTCA..............................................................3011.001.00--1.00-------------
..................................................................................................................................................................................................................................ATGGGAGAGCTGGTGAAAGGTCG.231.000.00------1.00---------
......................................................................................................................................TTCCTTTTCCTCACTTTTTTTG..............................................................................................221.000.00-1.00--------------
.....................................................................................................................................................................CACTTCATAATTTTATCATTTCAT.............................................................2411.001.001.00---------------
......................................................................................................................................................................ACTTCATAATTTTATCATTTCATTTTATTTCAG...................................................331.000.00-----1.00----------
..............................................................................................................................................................................ATTTTATCATTTCATTTTATTTTATTT.................................................271.000.00---1.00------------
..................................................................................................................................................................................................................................ATGGGAGAGCTGGTGAAAGGTCGTG251.000.00---1.00------------
..............................................................................................................................................................................ATTTTATCATTTCATTTTATTTCCAG..................................................261.000.001.00---------------
............................................................................................................TTTGTGTGTTTAGTGCACTGTTAGAACTCC................................................................................................................301.000.00---1.00------------
.....................................................................................................................................................................CACTTCATAATTTTATCATT.................................................................2011.001.00--1.00-------------
................................................................................................................................................................................TTTATCATTTCATTTTATTTTCAG..................................................2411.001.00-1.00--------------
..................................................................................................................................................................................................................................ATGGGAGAGCTGGTGAAAGGTTGCGCG271.000.00---1.00------------
.........................................................................................................................................CTTTTCCTCACTTTTGTTTTGTTCACGGC....................................................................................291.000.00---1.00------------
.....................................................................................................................................................................CACTTCATAATTTTATCATTTCATTTTATTTT.....................................................3211.001.00-1.00--------------
....................................................................................................................................................................................TCATTTCATTTTATTTGCTG..................................................201.000.00----1.00-----------
..........................................................................................................................GCACTGTTAGAATTCACTT.............................................................................................................191.000.00-------1.00--------
..................................................................................................................................................ACTTTTGTTTTGTTCATGGCACTCC...............................................................................251.000.00---1.00------------
....................................................................................................................................................TTTTGTTTTGTTCATGCC....................................................................................181.000.00---1.00------------
.....................................................................................................................................ATTCCTTTTCCTCACTTTTGTTTTGTT..........................................................................................2711.001.00---1.00------------
....................................................................................................................................................................................TCATTTCATTTTATTTTCTATC................................................221.000.00-1.00--------------
............................................................................................AATTTATTTTTCCATATACA..........................................................................................................................................201.000.001.00---------------
.....................................................................................................................................................................CACTTCATAATTTTATCATTTCATTTTAAT.......................................................301.000.00-1.00--------------
.....................................................................................................................................................................CACTTCATAATTTTATCATTTCATTTTATTT......................................................3111.001.001.00---------------
....................................................................................................................................AATTCCTTTTCCTCACTTTTGTTTTGTTCATG......................................................................................3211.001.00-1.00--------------
.....................................................................................................................................................................CACTTCATAATTTTATCATCTCA..............................................................231.000.001.00---------------
.........................................................................................................................................................................TCATAATTTTATCATTTCATTTTCAG.......................................................261.000.00--1.00-------------
.....................................................................................................................................................................CACTTCATAATTTTATCATTTCATTTTATCCAG....................................................331.000.00-1.00--------------
...................................................................................................................................................................................................................................TGGGAGAGCTGGTGAAAGGTCGTG241.000.00---1.00------------
.............................................................................................................................................................................................................ATCTGGTCAGTGGGTTGC...........................1811.001.00----------1.00-----
.................................................................................................................................................................................TTATCATTTCATTTTATCTTC....................................................211.000.00--1.00-------------
..............................................................................................................................................................................ATTTTATCATTTCATTTTATTTTCAG..................................................2611.001.001.00---------------
.............................................................................................................................................TCCTCACTTTTGTTTTGTTCATGGCACT.................................................................................2811.001.00------1.00---------
...............................................................................................................................................................................TTTTATCATTTCATTTTATTTTATG..................................................251.000.00----1.00-----------
................................................................................................................................................................................TTTATCATTTCATTTTATTTTCAGTTG...............................................2711.001.00--1.00-------------
......................................................................................................................................................................ACTTCATAATTTTATCATTTCATTTTATTTCCAG..................................................341.000.001.00---------------
.....................................................................................................................................................................CACTTCATAATTTTATCATTTCATTTTTA........................................................291.000.00-1.00--------------
.....................................................................................................................................................................CACTTCATAATTTTATCATTTCATTCTCA........................................................291.000.001.00---------------
..............................................................................................................................................................TTCATGGCACTTCATAA...........................................................................1720.500.500.50---------------
....................................................................................................................................................................................................................................GGGAGAGCTGGTGAAAGG....1840.500.50---------------0.50
.......................................................................................................................................TCCTTTTCCTCACTTTTG.................................................................................................1820.500.500.50---------------
...........................................................................................................................................................................................................ATATCTGGTCAGTGGG...............................1630.330.33--0.33-------------

Antisense strand
TTTGGCACTAAAACCCCAGATTGCTACAAACCGAAGGCTAAAATAGAGGTCAGCAATCATTCATATTGTGTAAAATGTCACCCTTAGCTAGCAATTTATTTTTCCATATTTGTGTGTTTAGTGCACTGTTAGAATTCCTTTTCCTCACTTTTGTTTTGTTCATGGCACTTCATAATTTTATCATTTCATTTTATTTTCAGTTGATATCTGGTCAGTGGGTTGCATCATGGGAGAGCTGGTGAAAGGTTGT
................................................................................................................((((...(((((..((.((((((.................))))))..))..))))).))))............................................................................
...........................................................................................................108.................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR189785SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040008(GSM532893)
G727N. (cervix)
..................................................................................................................TGTTTAGTGCACTGTACA...................................................................................................................... 181.000.00-------1.00--------
...............................................CAATATGAATGATTGCTGACC...................................................................................................................................................................................... 2111.001.00---------1.00------