ID: uc003mjf.1_intron_11_0_chr5_178050418_r.5p
GENE: CLK4(1)
chr5:178053747-178053996-


(1)
AGO1.ip OTHER.mut 		(13)
B-CELL 		(2)
BRAIN 		(2)
BREAST 		(21)
CELL-LINE 		(1)
CERVIX 		(1)
HELA 		(2)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(10)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
CGGCAGTTTGGCGACATTTCTCGGCCGAAGGGCCATTTGCTTTTGCGGAGGTAGGGTTGCAGATGGTGTGTGCTGGGACAGGCGGCTGTCGGTCTTTAGGTCTCCGAGCCAGGTGTCGGAGAAACGACCGCGTTAGGGGCCTGGGCTTCTGGAGCTGAGTTGGGAGTTCTGCGAGGCGCTGCTCGGCTGGTGCACGCCGGCAGCACCGAAAGTTGCTCGGGCGTCGCGGTTCTGCCGCTGACCCTTCTCT
.....................................................((.(((.(((((((....)))..(((((....))))).........)))).))).))............................................................................................................................................
..................................................51.............................................................114......................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029129(GSM416758)
SW480. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR189785SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038863(GSM458546)
MM603. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)
....................................................AGGGTTGCAGATGGTGTG....................................................................................................................................................................................18121.0021.00--1.002.001.00--2.00-1.002.00--2.002.00--1.00---2.001.00-1.00----------------1.00----1.00----1.00----------
..................................................GTAGGGTTGCAGATGGTG......................................................................................................................................................................................18112.0012.009.00--1.00------------2.00---------------------------------------------
..................................................GTAGGGTTGCAGATGGA.......................................................................................................................................................................................178.000.008.00-------------------------------------------------------------
..........................................................GCAGATGGTGTGTGCTGGGACAG.........................................................................................................................................................................2313.003.00--3.00-----------------------------------------------------------
..........................................TTGCGGAGGTAGGGTTGC..............................................................................................................................................................................................1813.003.00-----------1.00---------------------------------------------1.00-1.00--
...CAGTTTGGCGACATTTCTCGG..................................................................................................................................................................................................................................2112.002.00-2.00------------------------------------------------------------
.............................................................GATGGTGTGTGCTGGGACAGGCG......................................................................................................................................................................2312.002.00-------1.00------------1.00-----------------------------------------
..................................................GTAGGGTTGCAGATGGTGTG....................................................................................................................................................................................2012.002.00-------------------1.00--------------------------------1.00---------
...........................................................................................................................................................TGAGTTGGGAGTTCTGCGAGGCGCTGC....................................................................2711.001.00-----------------------------------------------1.00--------------
..........................................TTGCGGAGGTAGGGTTGCAGAT..........................................................................................................................................................................................2211.001.00---------------------------------------1.00----------------------
..............................................................................................TTTAGGTCTCCGAGCCAG..........................................................................................................................................1811.001.00------------------1.00-------------------------------------------
...................................................TAGGGTTGCAGATGGTGTGTG..................................................................................................................................................................................2111.001.00------------------------------------------------1.00-------------
..........................................TTGCGGAGGTAGGGTTGCAA............................................................................................................................................................................................201.000.00----1.00---------------------------------------------------------
.......................................CTTTTGCGGAGGTAGGGT.................................................................................................................................................................................................1811.001.00------------1.00-------------------------------------------------
..................................................GTAGGGTTGCAGATGGAAAA....................................................................................................................................................................................201.000.00---1.00----------------------------------------------------------
..........................................TTGCGGAGGTAGGGTTGCAGATGCGTG.....................................................................................................................................................................................271.000.00---------------1.00----------------------------------------------
............................................GCGGAGGTAGGGTTGCAGATGGTGTG....................................................................................................................................................................................2611.001.00-----------------1.00--------------------------------------------
..........................................................GCAGATGGTGTGTGCTGGGA............................................................................................................................................................................2011.001.00-------------------------------------------------------1.00------
....................................................................................................................................................................................................................TTGCTCGGGCGTCGC.......................1511.001.00--------------------------------------------------------1.00-----
.............................................................................................................CAGGTGTCGGAGAAACGA...........................................................................................................................1811.001.00--------------------1.00-----------------------------------------
......................................GCTTTTGCGGAGGTAGGGTTG...............................................................................................................................................................................................2111.001.00----1.00---------------------------------------------------------
.............................................CGGAGGTAGGGTTGCAGATGG........................................................................................................................................................................................2111.001.00-----------------------------------------------------1.00--------
...........................................................................................................................ACGACCGCGTTAGGGGCCTGGGCT.......................................................................................................2411.001.00---------------1.00----------------------------------------------
......................................................GGTTGCAGATGGTGTCGT..................................................................................................................................................................................181.000.00-------------------------------1.00------------------------------
.............................................................................................................CAGGTGTCGGAGAAATTT...........................................................................................................................181.000.00---------------------------------------------1.00----------------
................................................AGGTAGGGTTGCAGATGGTGTG....................................................................................................................................................................................2211.001.00----------------------------------1.00---------------------------
...................................................TAGGGTTGCAGATGGTGTG....................................................................................................................................................................................1911.001.00----------------------1.00---------------------------------------
..................................................GTAGGGTTGCAGATGGTGTGAGCT................................................................................................................................................................................2411.002.00----------------------------------------------------------1.00---
......................................GCTTTTGCGGAGGTAGGG..................................................................................................................................................................................................1811.001.00------------------------------------------1.00-------------------
...CAGTTTGGCGACATTTCTAAT..................................................................................................................................................................................................................................211.000.00-1.00------------------------------------------------------------
...............................................GAGGTAGGGTTGCAGATGGTGTG....................................................................................................................................................................................2311.001.00-------------------------------------------------------------1.00
..................................................GTAGGGTTGCAGATGGGG......................................................................................................................................................................................181.000.001.00-------------------------------------------------------------
...........................................TGCGGAGGTAGGGTTGC..............................................................................................................................................................................................1711.001.00-----------------------------1.00--------------------------------
...........................................TGCGGAGGTAGGGTTGCA.............................................................................................................................................................................................1811.001.00------------------------------------------------------1.00-------
..................................................GTAGGGTTGCAGATGGTAAA....................................................................................................................................................................................201.000.00--------1.00-----------------------------------------------------
...........................................TGCGGAGGTAGGGTTGACAG...........................................................................................................................................................................................201.000.00-------------------------------------1.00------------------------
..................................................GTAGGGTTGCAGATGGAA......................................................................................................................................................................................181.000.00--------------------------------------------------1.00-----------
.....................................TGCTTTTGCGGAGGTAGGGTTGCAGACGG........................................................................................................................................................................................291.000.00------1.00-------------------------------------------------------
....................................................................TGTGCTGGGACAGGCGGCTGCCGG..............................................................................................................................................................241.000.00------1.00-------------------------------------------------------
..................................................GTAGGGTTGCAGATGGTGT.....................................................................................................................................................................................1911.001.00---------1.00----------------------------------------------------
........................CCGAAGGGCCATTTGCTTTTGCG...........................................................................................................................................................................................................2311.001.00----------------------------1.00---------------------------------
.............................................CGGAGGTAGGGTTGCAGATGGTGTG....................................................................................................................................................................................2511.001.00------------------------------1.00-------------------------------
.............................................CGGAGGTAGGGTTGCAGATG.........................................................................................................................................................................................2011.001.00--------------------------1.00-----------------------------------
....................................................................................................................................................CTGGAGCTGAGTTGGGAGTT..................................................................................2011.001.00----------------------------------------1.00---------------------
....................................................AGGGTTGCAGATGGTGT.....................................................................................................................................................................................1711.001.00--------1.00-----------------------------------------------------
.......................................CTTTTGCGGAGGTAGGGTTG...............................................................................................................................................................................................2011.001.00---------------------------------1.00----------------------------
.............................................CGGAGGTAGGGTTGCAGATGGT.......................................................................................................................................................................................2211.001.00-----------1.00--------------------------------------------------
.................TTCTCGGCCGAAGGG..........................................................................................................................................................................................................................1511.001.00------------------1.00-------------------------------------------
..................................................GTAGGGTTGCAGATGGTGTGTGCT................................................................................................................................................................................2411.001.00---------------------------1.00----------------------------------
........................................TTTTGCGGAGGTAGGGTTGC..............................................................................................................................................................................................2011.001.00-------------------------------------------1.00------------------
...........................................................................................................GCCAGGTGTCGGAGAAACGAC..........................................................................................................................2111.001.00----1.00---------------------------------------------------------
............GACATTTCTCGGCCGAAGGGCCATTTGCT.................................................................................................................................................................................................................2911.001.00-------------------------1.00------------------------------------
...........................................................CAGATGGTGTGTGCTGGGACAGGCGGCTGT.................................................................................................................................................................3011.001.00-----------------------------------1.00--------------------------
............................................................................................................................................................GAGTTGGGAGTTCTGCGAGTAAA.......................................................................231.000.00------------1.00-------------------------------------------------
............................AGGGCCATTTGCTTTTGC............................................................................................................................................................................................................1811.001.00--------------------------------1.00-----------------------------
................................................................GGTGTGTGCTGGGACAGG........................................................................................................................................................................1840.250.25-----------------------0.25--------------------------------------

Antisense strand
CGGCAGTTTGGCGACATTTCTCGGCCGAAGGGCCATTTGCTTTTGCGGAGGTAGGGTTGCAGATGGTGTGTGCTGGGACAGGCGGCTGTCGGTCTTTAGGTCTCCGAGCCAGGTGTCGGAGAAACGACCGCGTTAGGGGCCTGGGCTTCTGGAGCTGAGTTGGGAGTTCTGCGAGGCGCTGCTCGGCTGGTGCACGCCGGCAGCACCGAAAGTTGCTCGGGCGTCGCGGTTCTGCCGCTGACCCTTCTCT
.....................................................((.(((.(((((((....)))..(((((....))))).........)))).))).))............................................................................................................................................
..................................................51.............................................................114......................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029129(GSM416758)
SW480. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR189785SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038863(GSM458546)
MM603. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)
..............................................GGAGGTAGGGTTGCAGACAG........................................................................................................................................................................................ 202.000.00-----2.00--------------------------------------------------------
...............................................................................................................................................................................................TTTCGGTGCTGCCGGCGTGC....................................... 2012.002.00------------------------------------1.00-------1.00-----------------
...........................................................................................................................................CCTGGGCTTCTGGAGCGTA............................................................................................ 191.000.00--------------------------------------1.00-----------------------
..........................................................................................................................................................................GCGAGGCGCTGCTCGGCT.............................................................. 181.000.00------------------------------------------------------------1.00-
...................................................TAGGGTTGCAGATGGTG...................................................................................................................................................................................... 171.000.00-----1.00--------------------------------------------------------
..........................................................................................................................................................CTCGCAGAACTCCCAACTCAG........................................................................... 2111.001.00-----------------------1.00--------------------------------------
............................................................................................................................................CTGGGCTTCTGGAGCTGG............................................................................................ 181.000.00-1.00------------------------------------------------------------
.......................................................................................GTCGGTCTTTAGGTCTGCCC............................................................................................................................................... 201.000.00------1.00-------------------------------------------------------
...............................................................................................................................................................GAGCAGCGCCTCGCAGAACTCCCAA.................................................................. 2511.001.00-------------------1.00------------------------------------------