ID: uc003miu.2_intron_0_0_chr5_177631742_f
GENE: (1)
chr5:177631692-177631865+


(6)
AGO2.ip 		(9)
B-CELL 		(4)
BRAIN 		(14)
BREAST 		(35)
CELL-LINE 		(5)
CERVIX 		(3)
HEART 		(1)
HELA 		(7)
LIVER 		(3)
OTHER 		(1)
OVARY 		(1)
RRP40.ip 		(19)
SKIN 		(1)
TESTES 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
TTCCCCTGCGGGTGGGGACGAGCGGGCCCCGCGGCGTCATCGGCGGCGAGGTGAGCGGCGGCCGGCGGGCGGGAGCTCTGGCGGGAGCCGCGCCGGCCTGACGCGCTGTCGCCGCTGGTTGCAGGAGCCGCCGCGCCTCGGCCTAGCATGTCGGAAGCGGGCGAGGAGCAGCCC
.......................................................(((((((((.(((((.((.((...(((....))))).)).))))).)).)))))))...............................................................
..................................................51..........................................................111.............................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM379265(GSM379265)
Small RNA from endometrioid ovarian cancer tissue. (ovary)		SRR343335GSM532876(GSM532876)
G547T. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577588(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038859(GSM458542)
MM386. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040028(GSM532913)
G026N. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR040009(GSM532894)
G727T. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
..........................................................CGGCCGGCGGGCGGGGGG..................................................................................................1811.000.0010.00-1.00----------------------------------------------------------------------------------------------------------
.................................GCGTCATCGGCGGCGAG............................................................................................................................1719.009.00-------4.00---3.00-----------------------------------------1.00--------------1.00----------------------------------------
.........................................................GCGGCCGGCGGGCGGTGGG..................................................................................................198.000.004.00-2.00-----------------------------------1.00-----------1.00----------------------------------------------------------
........................................................GGCGGCCGGCGGGCGGTG....................................................................................................186.000.00---------1.002.00-------1.00--------1.00---------1.00-----------------------------------------------------------------------
.......................................................CGGCGGCCGGCGGGCGGTGGG..................................................................................................2134.331.670.33-1.33-0.67----0.670.33----------------------0.330.33---------------------------------------------------------------0.33----------
.......................................................CGGCGGCCGGCGGGCGGTG....................................................................................................1934.001.67---------1.00----------0.330.33-----------0.330.670.33---0.33-----------------------------------------------------0.33------------0.33--
...............................................................................................................................................TAGCATGTCGGAAGCGGGCGAGGAGC.....2614.004.00------4.00------------------------------------------------------------------------------------------------------
......................................................................GGGAGCTCTGGCGGGAGCCGCGCC................................................................................2414.004.00----------------2.00--------2.00-----------------------------------------------------------------------------------
.........................................................GCGGCCGGCGGGCGGGGGG..................................................................................................194.000.003.00-1.00----------------------------------------------------------------------------------------------------------
.................................................................................................................................................GCATGTCGGAAGCGGGTAA..........194.000.00----4.00--------------------------------------------------------------------------------------------------------
.........................................................GCGGCCGGCGGGCGGTGG...................................................................................................184.000.003.00-----------1.00------------------------------------------------------------------------------------------------
.......................................................CGGCGGCCGGCGGGCGGGGGG..................................................................................................2124.001.501.00-1.50-------1.50--------------------------------------------------------------------------------------------------
.......................................................CGGCGGCCGGCGGGCGGGGG...................................................................................................2023.501.501.000.501.00-------------------------------------------------------------------------------0.50-----0.50--------------------
.....................................................................CGGGAGCTCTGGCGGGAGCCG....................................................................................2113.003.00-----3.00-------------------------------------------------------------------------------------------------------
................................................................................................................................CGCCGCGCCTCGGCCGGC............................183.000.00---------------------------------------------1.001.00------------------1.00-------------------------------------------
.......................................................CGGCGGCCGGCGGGCGGTGG...................................................................................................2032.671.670.33---0.33-------0.67--------0.67-----------0.33-------------------------------------------------------------0.33-------------
......................................................GCGGCGGCCGGCGGGCGGGG....................................................................................................2022.501.00-----0.50-------0.50----0.50--0.50---------------------------------------------------------------0.50-----------------------
......................................................GCGGCGGCCGGCGGGCGGGGGG..................................................................................................2222.501.001.00-1.00----------0.50-----------------------------------------------------------------------------------------------
.............................................................................................CGGCCTGACGCGCTGTCGCTGA...........................................................2212.001.00-------------------2.00-----------------------------------------------------------------------------------------
...............................................................................................................................................TAGCATGTCGGAAGCGGG.............1812.002.00------------------------------------------1.00---------------1.00--------------------------------------------------
.....................................................................................................................................................GTCGGAAGCGGGCGAGGAGCAGCCC2512.002.00-2.00-----------------------------------------------------------------------------------------------------------
......................................................................................................................TTGCAGGAGCCGCCGCGCCTCGGCCTAGCACG........................322.000.00---2.00---------------------------------------------------------------------------------------------------------
.............................................................................................................................AGCCGCCGCGCCTCGGCCTAGCATGTCGG....................2912.002.00---2.00---------------------------------------------------------------------------------------------------------
..CCCCTGCGGGTGGGGACGA.........................................................................................................................................................1912.002.00-----------------2.00-------------------------------------------------------------------------------------------
......................................................GCGGCGGCCGGCGGGCGGGGG...................................................................................................2122.001.000.50-0.50------------0.50-----------------------------------------------------------------0.50---------------------------
............................................................................................................................GAGCCGCCGCGCCTCGGCCTAGCATGTCGG....................3012.002.00--------------------2.00----------------------------------------------------------------------------------------
..........GGTGGGGACGAGCGGGCCCCGCGGCGTCATCGGCGG................................................................................................................................3612.002.00-2.00-----------------------------------------------------------------------------------------------------------
.................................................................................................................................................GCATGTCGGAAGCGGGCGAGGA.......2212.002.00------------------------2.00------------------------------------------------------------------------------------
.................................GCGTCATCGGCGGCGGG............................................................................................................................172.000.00-------1.00---------------------------------1.00-------------------------------------------------------------------
.............................................................CCGGCGGGCGGGAGCT.................................................................................................1612.002.00-----2.00-------------------------------------------------------------------------------------------------------
..............................................................................................................................................CTAGCATGTCGGAAGCGGG.............1912.002.00-2.00-----------------------------------------------------------------------------------------------------------
..........................................................................................................................................................AAGCGGGCGAGGAGCAGCCCACGG242.000.00---2.00---------------------------------------------------------------------------------------------------------
.......................................................CGGCGGCCGGCGGGCGGT.....................................................................................................1831.671.67-----0.67-------0.33-----0.33-------------------------------------------------------------------------------0.33---------
.......................................................CGGCGGCCGGCGGGCGG......................................................................................................1731.671.67--0.33--0.33--------------------------------0.33----------------------------------------------------------0.33---0.33-------
.......................................................CGGCGGCCGGCGGGCGGG.....................................................................................................1821.501.50-----------0.50---------0.50-----------------------------------------------------------------0.50---------------------
......................................................GCGGCGGCCGGCGGGCGGCGG...................................................................................................2131.330.33-0.33-----------0.33----------------------------------------------------------------0.33-------------0.33----------------
......................................................GCGGCGGCCGGCGGGCGGT.....................................................................................................1931.330.33------------0.330.33-----------------0.33----------------------------------------------------------------0.33------------
......................................................GCGGCGGCCGGCGGGCGGCGGG..................................................................................................2231.330.33------------------------------------0.33----------------------------------------0.330.33------------------------0.33-----
.............................................................................................................................................CCTAGCATGTCGGAAGCGGGCGAG.........2411.001.00---------1.00---------------------------------------------------------------------------------------------------
...........................................................................................................................................................AGCGGGCGAGGAGCAGCCCACGG231.000.00---1.00---------------------------------------------------------------------------------------------------------
..........................................................................................................................................................AAGCGGGCGAGGAGCAGCT.191.000.00----------------------------1.00--------------------------------------------------------------------------------
........................................................................................................................................CTCGGCCTAGCATGTCGGAAGCGGGC............2611.001.00-1.00-----------------------------------------------------------------------------------------------------------
..................................CGTCATCGGCGGCGAGGA..........................................................................................................................181.000.00--------------1.00----------------------------------------------------------------------------------------------
.......GCGGGTGGGGACGAGCGTAG...................................................................................................................................................201.000.00----------------------------------------------------1.00--------------------------------------------------------
......................................................................................GCCGCGCCGGCCTGACGCGCTGTCGCC.............................................................2711.001.00----------------------------------------------------------------1.00--------------------------------------------
............................................................................TCTGGCGGGAGCCGCGCCGG..............................................................................2011.001.00----------------------1.00--------------------------------------------------------------------------------------
.......................................................CGGCGGCCGGCGGGCGGGAG...................................................................................................2011.001.00---------------1.00---------------------------------------------------------------------------------------------
................................GGCGTCATCGGCGGCGAG............................................................................................................................1811.001.00---------------------------------------1.00---------------------------------------------------------------------
................................................................................................................................CGCCGCGCCTCGGCCGG.............................171.000.00------------------------------------------------------------------1.00------------------------------------------
......................................................GCGGCGGCCGGCGGGTGA......................................................................................................181.000.00--1.00----------------------------------------------------------------------------------------------------------
.................................................................................................................................................GCATGTCGGAAGCGGGCGAGGAG......2311.001.00--------------------------1.00----------------------------------------------------------------------------------
.........................................................................................................................CAGGAGCCGCCGCGCCTCGGCCTAGCACG........................291.000.00--------1.00----------------------------------------------------------------------------------------------------
.................................GCGTCATCGGCGGCGAGGG..........................................................................................................................191.000.00--------------1.00----------------------------------------------------------------------------------------------
....................................................................................................................................................TGTCGGAAGCGGGCGAGGAGCAG...2311.001.00---------------------------------------------------------1.00---------------------------------------------------
............................................................................................................................GAGCCGCCGCGCCTCGGCCCAGC...........................231.000.00--------1.00----------------------------------------------------------------------------------------------------
........CGGGTGGGGACGAGCGGGCCCCGCGGCGTC........................................................................................................................................3011.001.00---1.00---------------------------------------------------------------------------------------------------------
.............................................................................................................................................CCTAGCATGTCGGAAGCGGGC............2111.001.00--------------------------1.00----------------------------------------------------------------------------------
......................................................................................................................................................TCGGAAGCGGGCGAGGA.......1711.001.00--------------------------------------------------------1.00----------------------------------------------------
.......................................................................................................................................................CGGAAGCGGGCGAGGAGCA....1911.001.00--1.00----------------------------------------------------------------------------------------------------------
...................................................................................................................................................ATGTCGGAAGCGGGCGAGGAGC.....2211.001.00-1.00-----------------------------------------------------------------------------------------------------------
.......................................................CGGCGGCCGGCGGGCGGGG....................................................................................................1921.001.500.50-----------------------------------------------------------------------------------0.50------------------------
...............................................................................................................................................TAGCATGTCGGAAGCGGGCGAGGAGCAGC..2911.001.00------1.00------------------------------------------------------------------------------------------------------
..................................................................................................................................................CATGTCGGAAGCGGGCGA..........1811.001.00----------------------------1.00--------------------------------------------------------------------------------
...........................................................GGCCGGCGGGCGGGACGG.................................................................................................181.000.00-1.00-----------------------------------------------------------------------------------------------------------
...........................................................................................................GTCGCCGCTGGTTGCAG..................................................1711.001.00--------------------------------------------------------------1.00----------------------------------------------
......................CGGGCCCCGCGGCGTCATCGGCGG................................................................................................................................2411.001.00-1.00-----------------------------------------------------------------------------------------------------------
..........................................................CGGCCGGCGGGCGGGGGGT.................................................................................................191.000.00-----------------1.00-------------------------------------------------------------------------------------------
.................ACGAGCGGGCCCCGCGGCG..........................................................................................................................................1911.001.00-----------------------------------------------------------1.00-------------------------------------------------
.........................................................................................................................................................GAAGCGGGCGAGGAGCAG...1811.001.00-----------------------------------1.00-------------------------------------------------------------------------
..........................................................................................................................................CGGCCTAGCATGTCGGAAGCGGG.............2311.001.00-----------------------------------------------1.00-------------------------------------------------------------
...............................................................................................................................CCGCCGCGCCTCGGCCTAGCAGCCA......................251.000.00------------------------------1.00------------------------------------------------------------------------------
..............................................................................................................................................CTAGCATGTCGGAAGCGGGCGAGG........2411.001.00---------------------------------------------------------------1.00---------------------------------------------
.............................................................................................CGGCCTGACGCGCTGTCGC..............................................................1911.001.00---------------1.00---------------------------------------------------------------------------------------------
..............................................................................................................................................CTAGCATGTCGGAAGCGGGCGAGGAGCAGC..3011.001.00-1.00-----------------------------------------------------------------------------------------------------------
................................................................................................................................................AGCATGTCGGAAGCGGGCGA..........2011.001.00------------------------------------------------------------------------1.00------------------------------------
.....................................................................................................................................................GTCGGAAGCGGGCGAGGAGC.....2011.001.00----1.00--------------------------------------------------------------------------------------------------------
...........................................CGGCGAGGTGAGCGGCGGC................................................................................................................1911.001.00------------------------------------------------------1.00------------------------------------------------------
...................................................................................................................................................ATGTCGGAAGCGGGCGAGGAGCAG...2411.001.00-----------------------------------------------------------------------1.00-------------------------------------
.......................................................CGGCGGCCGGCGGGCGGGGGGG.................................................................................................2221.001.500.50--------------0.50---------------------------------------------------------------------------------------------
......................................................GCGGCGGCCGGCGGGCGGTG....................................................................................................2031.000.33-0.33--------0.67--------------------------------------------------------------------------------------------------
..........................................................................................................................AGGAGCCGCCGCGCCTCGGCC...............................2111.001.00--------1.00----------------------------------------------------------------------------------------------------
.........................................................GCGGCCGGCGGGCGGGAGG..................................................................................................191.000.00---------1.00---------------------------------------------------------------------------------------------------
.........................................................GCGGCCGGCGGGCGGGAGCTCTGG.............................................................................................2411.001.00----------------------------------------------------------------------1.00--------------------------------------
.............................................................................................................................................CCTAGCATGTCGGAAGCGGGCG...........2211.001.00-------------------------------------------------------------1.00-----------------------------------------------
.....................................................................CGGGAGCTCTGGCGGGAGCCGC...................................................................................2211.001.00--------------1.00----------------------------------------------------------------------------------------------
.......................................................................................................................TGCAGGAGCCGCCGCGCCTCGGCC...............................2411.001.00---1.00---------------------------------------------------------------------------------------------------------
.............................................................................................CGGCCTGACGCGCTGTCGCCGCTGGT.......................................................2611.001.00---------------------------------------------------1.00---------------------------------------------------------
.......................................................CGGCGGCCGGCGGGCGGCGG...................................................................................................2031.001.67-0.33----------------------------------------------------------------------------------------0.330.33-----------------
.......................................................CGGCGGCCGGCGGGCGGGGGGC.................................................................................................2221.001.50--0.50--------------------------------------------------------------------------------------0.50-------------------
.........................................................................AGCTCTGGCGGGAGCCGCGCCGA..............................................................................231.000.00----------------------------------------1.00--------------------------------------------------------------------
...................................................TGAGCGGCGGCCGGCCCC.........................................................................................................181.000.00---1.00---------------------------------------------------------------------------------------------------------
....................................................................................................................................................TGTCGGAAGCGGGCGAGGAGCAGCCCAC281.000.00--------1.00----------------------------------------------------------------------------------------------------
.........................................................GCGGCCGGCGGGCGGTG....................................................................................................171.000.00---------------------------1.00---------------------------------------------------------------------------------
....................................................................GCGGGAGCTCTGGCGGGAGCCGCGCCG...............................................................................2711.001.00------------------------------------1.00------------------------------------------------------------------------
......................................................GCGGCGGCCGGCGGGCGGG.....................................................................................................1921.001.00-------------0.50------------------------------------------------------------------0.50----------------------------
...............................................................................................................................CCGCCGCGCCTCGGCCTAGCAGCCG......................251.000.00------------------------------1.00------------------------------------------------------------------------------
.........................................................................................................................CAGGAGCCGCCGCGCCTCGGCCCAG............................251.000.00--------1.00----------------------------------------------------------------------------------------------------
..................................................GTGAGCGGCGGCCGGCGGGCGGGGG...................................................................................................251.000.00------------------------------------------------------------1.00------------------------------------------------
............................................................................................................TCGCCGCTGGTTGCAG..................................................1611.001.00--------------------------------1.00----------------------------------------------------------------------------
.......................................................................................................................................................CGGAAGCGGGCGAGGAGC.....1811.001.00-------------------------------------------------1.00-----------------------------------------------------------
.........................................................GCGGCCGGCGGGCGGT.....................................................................................................161.000.00------------1.00------------------------------------------------------------------------------------------------
....................................................................GCGGGAGCTCTGGCGGGAGCCGC...................................................................................2311.001.00---------------------------------------------------------------------1.00---------------------------------------
...........................................................GGCCGGCGGGCGGGAGTTTT...............................................................................................201.000.00-------------------------------------------------------1.00-----------------------------------------------------
...........................................................................................................GTCGCCGCTGGTTGCAGGAGC..............................................2111.001.00----------------1.00--------------------------------------------------------------------------------------------
..................................................................................................................................................CATGTCGGAAGCGGGCGAGGAGC.....2311.001.00------1.00------------------------------------------------------------------------------------------------------
........................................................GGCGGCCGGCGGGCGGTGGT..................................................................................................201.000.00---------------------------------------------------------------------------1.00---------------------------------
..................................................................................................TGACGCGCTGTCGCCGC...........................................................1711.001.00-------------------------------------------------------------------------1.00-----------------------------------
......................................................................GGGAGCTCTGGCGGGAGCCGCGCCGGCCTGA.........................................................................3111.001.00-----------------------1.00-------------------------------------------------------------------------------------
....................................................................GCGGGAGCTCTGGCGGGAGCCGCACCG...............................................................................2711.001.00------------------------------------------------1.00------------------------------------------------------------
.......................................................................GGAGCTCTGGCGGGAGCCG....................................................................................1911.001.00--------------------------------------------1.00----------------------------------------------------------------
..................................................................................................................................................CATGTCGGAAGCGGGCGAG.........1911.001.00-------------------------------------------------------------------1.00-----------------------------------------
..........................................................CGGCCGGCGGGCGGGGGC..................................................................................................181.000.00-------------------------------1.00-----------------------------------------------------------------------------
................................GGCGTCATCGGCGGCGAGGAGC........................................................................................................................221.000.00-1.00-----------------------------------------------------------------------------------------------------------
.....................................................................................................................................................GTCGGAAGCGGGCGAGG........1711.001.00----1.00--------------------------------------------------------------------------------------------------------
........................................................GGCGGCCGGCGGGCGGGGG...................................................................................................1950.800.400.200.400.20----------------------------------------------------------------------------------------------------------
......................................................GCGGCGGCCGGCGGGCGGTA....................................................................................................2030.670.33-------------------------------------0.33----------------------------------------------------------------0.33------
......................................................GCGGCGGCCGGCGGGCGGTGG...................................................................................................2130.670.33------------0.33------------------------------------------------------------------0.33-----------------------------
......................................................GCGGCGGCCGGCGGGCGGTGGG..................................................................................................2230.670.33----------0.33------------------------------------------------------------------0.33-------------------------------
........................................................GGCGGCCGGCGGGCGGGGGG..................................................................................................2050.600.400.20-0.20-0.20--------------------------------------------------------------------------------------------------------
.......................................................CGGCGGCCGGCGGGCGGGGA...................................................................................................2020.501.50---------------------------------0.50---------------------------------------------------------------------------
.......................................................CGGCGGCCGGCGGGCGGGT....................................................................................................1920.501.50-----------------------------------------------------------------------------------0.50-------------------------
.......................................................CGGCGGCCGGCGGGCGGGTGG..................................................................................................2120.501.50--------------------------------------------------------------------------------------0.50----------------------
.............GGGGACGAGCGGGCC..................................................................................................................................................1520.500.50----------------------------------------------------------------------------0.50--------------------------------
......................................................................GGGAGCTCTGGCGGGAGC......................................................................................1820.500.50-------------------------------0.50-----------------------------------------------------------------------------
......................................................GCGGCGGCCGGCGGGCGGGGGGG.................................................................................................2320.501.00----------------------------------0.50--------------------------------------------------------------------------
...................................GTCATCGGCGGCGAG............................................................................................................................1520.500.50--------------------------------0.50----------------------------------------------------------------------------
........................................................GGCGGCCGGCGGGCGGG.....................................................................................................1750.400.40-0.40-----------------------------------------------------------------------------------------------------------
......................................................GCGGCGGCCGGCGGGCGGACG...................................................................................................2130.330.33------------------0.33------------------------------------------------------------------------------------------
.........................................................................................................................................................GAAGCGGGCGAGGAG......1530.330.33---0.33---------------------------------------------------------------------------------------------------------
......................................................GCGGCGGCCGGCGGGCGG......................................................................................................1830.330.33-----0.33-------------------------------------------------------------------------------------------------------
......................................................GCGGCGGCCGGCGGGCGGAGG...................................................................................................2130.330.33----0.33--------------------------------------------------------------------------------------------------------
......................................................GCGGCGGCCGGCGGGCGGTT....................................................................................................2030.330.33-------------0.33-----------------------------------------------------------------------------------------------
......................................................GCGGCGGCCGGCGGGCGGAA....................................................................................................2030.330.33--------------------------------------------------------------------------------------------------------0.33----
.......................................................CGGCGGCCGGCGGGCGGCC....................................................................................................1930.331.67-0.33-----------------------------------------------------------------------------------------------------------
......................................................GCGGCGGCCGGCGGGCG.......................................................................................................1760.330.330.33------------------------------------------------------------------------------------------------------------
......................................................GCGGCGGCCGGCGGGCGGTATG..................................................................................................2230.330.33---------------------0.33---------------------------------------------------------------------------------------
.......................................................CGGCGGCCGGCGGGCGGCCGG..................................................................................................2130.331.67----------------------------------------------------------------------------------------------0.33--------------
.......................................................CGGCGGCCGGCGGGCGGTGA...................................................................................................2030.331.670.33------------------------------------------------------------------------------------------------------------
.......................................................CGGCGGCCGGCGGGCGGAGG...................................................................................................2030.331.67---------0.33---------------------------------------------------------------------------------------------------
......................................................GCGGCGGCCGGCGGGCGGTCAA..................................................................................................2230.330.33---------------------------------------------------------------------------------------------------------0.33---
......TGCGGGTGGGGACGA.........................................................................................................................................................1530.330.33----------------------0.33--------------------------------------------------------------------------------------
.......................................................CGGCGGCCGGCGGGCG.......................................................................................................1670.290.29--0.14---------------------------------------------------------------------------------------0.14------------------
........................................................GGCGGCCGGCGGGCGGGGGGT.................................................................................................2150.200.40----------------------------------------0.20--------------------------------------------------------------------
......................................................GCGGCGGCCGGCGGGCGCGG....................................................................................................2060.170.33-------------0.17-----------------------------------------------------------------------------------------------
......................................................GCGGCGGCCGGCGGGC........................................................................................................1670.140.14------------------------------------------------------------------------------------------------------------0.14
..CCCCTGCGGGTGGGG.............................................................................................................................................................1590.110.11-----------------------------------------0.11-------------------------------------------------------------------

Antisense strand
TTCCCCTGCGGGTGGGGACGAGCGGGCCCCGCGGCGTCATCGGCGGCGAGGTGAGCGGCGGCCGGCGGGCGGGAGCTCTGGCGGGAGCCGCGCCGGCCTGACGCGCTGTCGCCGCTGGTTGCAGGAGCCGCCGCGCCTCGGCCTAGCATGTCGGAAGCGGGCGAGGAGCAGCCC
.......................................................(((((((((.(((((.((.((...(((....))))).)).))))).)).)))))))...............................................................
..................................................51..........................................................111.............................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM379265(GSM379265)
Small RNA from endometrioid ovarian cancer tissue. (ovary)		SRR343335GSM532876(GSM532876)
G547T. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577588(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038859(GSM458542)
MM386. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040028(GSM532913)
G026N. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR040009(GSM532894)
G727T. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
.......................GGGCCCCGCGGCGTCCGG..................................................................................................................................... 182.000.00-----------------------------2.00-------------------------------------------------------------------------------
........................TGACGCCGCGGGGCC....................................................................................................................................... 1531.331.33-----------------------0.33----------------------------------------------------0.33--0.33--------------------0.33--------
....................................................GAGCGGCGGCCGGCGCTT........................................................................................................ 181.000.00------------------1.00------------------------------------------------------------------------------------------
.....................................................AGCGGCGGCCGGCGGTCCT...................................................................................................... 191.000.00-------------------------------------------1.00-----------------------------------------------------------------
...................GAGCGGGCCCCGCGGCCGG........................................................................................................................................ 191.000.00--------------------------------------------------------------------------1.00----------------------------------
...................................................................................................................................TCCGACATGCTAGGCCGAGGCGCG................... 2411.001.00----------------------1.00--------------------------------------------------------------------------------------
....................................................................................................ACGCGCTGTCGCCGCTGGTTGAA................................................... 231.000.00-----------------------1.00-------------------------------------------------------------------------------------
.......................................................................................................................GCGGCGGCTCCTGCA........................................ 1550.200.20-----------------------------------------------------------------------------------------------------------0.20-
...........................................................................................................................AGGCGCGGCGGCTCC.................................... 1560.170.17---0.17---------------------------------------------------------------------------------------------------------