ID: uc003mim.2_intron_2_0_chr5_177565260_f.5p
GENE: (3)
chr5:177565210-177565459+


(1)
AGO2.ip 		(10)
B-CELL 		(3)
BRAIN 		(1)
BREAST 		(21)
CELL-LINE 		(1)
HEART 		(8)
HELA 		(2)
LIVER 		(1)
OTHER 		(11)
SKIN 		(2)
XRN.ip

Sense strand
GGAGCTGCTGCACTACGTGGGCCAGCTGCGGGCTGAGCTGGCCAGCGCAGGTGGGTGGCCACCCTTGCAAGTGCCCTGCGACAGCCTCCCTGAGGACATGGGAGACCCGAAGCTACTGAGTGACAGGGTTCCGGAAGGACGATGATGAGGATGTTGGTACCTGCATCTGTAGGCCTCCTTGAAACCGGGTAATGACAGTCTCTGAGCTACTTCAAAAAGCCCAACAAATTATTAATTTACCTGAGATGAT
...................................................................................................................................((((((((.........((((((........)))))).......)))))....)))...............................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189784SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........................................................................................................................................GGACGATGATGAGGATGTTGGTACCTGCATCTGTAGGCCTCCTTGAAACCGGGTAATGACAGTCTCTGAGCTAC........................................7419.009.008.001.00----------------------------------------------------------
........................................................................................................................................GGACGATGATGAGGATGTTGGTACCTGCATCTGTAGGCCTCCTTGAAACCGGGTAATGACAGTCTCTGAGCTA.........................................7318.008.001.007.00----------------------------------------------------------
........................................................................................................................................GGACGATGATGAGGATGTTGGTA...........................................................................................2316.006.00---1.00---1.002.00------1.00------1.00-------------------------------------
........................................................................................................................................GGACGATGATGAGGATGT................................................................................................1815.005.00---2.00----------2.00-----------------1.00---------------------------
.................................TGAGCTGGCCAGCGCAG........................................................................................................................................................................................................1715.005.00--5.00---------------------------------------------------------
........................................................................................................................................GGACGATGATGAGGATGTTGGT............................................................................................2215.005.00-------1.00-----1.00--------------------------1.00---------1.00---1.00-----
.......................................................................................................................................AGGACGATGATGAGGATGTTGGTACCTGCATCTGTAGGCCTCCTTGAAACCGGGTAATGACAGTCTCTGAGCTAC........................................7514.004.004.00-----------------------------------------------------------
.........................................................................................................................................GACGATGATGAGGATGTTGGTACCTGCATCTGTAGGCCTCCTTGAAACCGGGTAATGACAGTCTCTGAGCTAC........................................7314.004.002.00----------2.00------------------------------------------------
.........................................................................................................................................GACGATGATGAGGATGTTGGTACCTGCAT....................................................................................2913.003.00-----3.00------------------------------------------------------
........................................................................................................................................GGACGATGATGAGGATGTTGGTACC.........................................................................................2513.003.00----------------2.00-1.00-----------------------------------------
........................................................................................................................................GGACGATGATGAGGATGTTGGTACCTGCATCTGTAGGCCTCCTTGAAACCGGGTAATGACAGTCTCTGAGC...........................................7113.003.001.00-----------------------------------1.00-----------1.00-----------
.........................................................................................................................................GACGATGATGAGGATGTTGGTACCTGCATCTGTAGGCCTCCTTGAAACCGGGTAATGACAGTCTCTGAGCT..........................................7113.003.002.001.00----------------------------------------------------------
........................................................................................................................................GGACGATGATGAGGATGTTGG.............................................................................................2112.002.00----2.00-------------------------------------------------------
........................................................................................................................................GGACGATGATGAGGATGTT...............................................................................................1912.002.00-------1.00-----------------------------------1.00----------------
........................................................................................................................................GGACGATGATGAGGATGTTGGTACCTGCAT....................................................................................3012.002.00------------2.00-----------------------------------------------
.........................................................................................................................................GACGATGATGAGGATGTTGGTA...........................................................................................2212.002.00--------------------------------------1.00-------1.00-------------
.........................................................................................................................................GACGATGATGAGGATGTT...............................................................................................1812.002.00----------------------1.00---------------------------------1.00---
.....................................................................................................................................................GATGTTGGTACCTGCATCTGTAGG.............................................................................2412.002.00----------2.00-------------------------------------------------
......................CAGCTGCGGGCTGAGGTT..................................................................................................................................................................................................................182.000.00----2.00-------------------------------------------------------
........................................................................................................................................GGACGATGATGAGGATGTTGGTACCTGC......................................................................................2812.002.00---------------------2.00--------------------------------------
........................................................................................................................................GGACGATGATGAGGATGTTT..............................................................................................2011.002.00------------------1.00-----------------------------------------
..................................................................................................................................................................................TTGAAACCGGGTAATGACAGTCT.................................................2311.001.00---------1.00--------------------------------------------------
..................................................................................................................................CCGGAAGGACGATGATGAGGATGT................................................................................................2411.001.00---------------------------------------------------1.00--------
........................................................................................................................................GGACGATGATGAGGATGTTGGA............................................................................................2211.002.00------1.00-----------------------------------------------------
.........................................................................................................................................GACGATGATGAGGATGTTGGTACCTGCATCTGTAGGCCTCCTTGAAACCGGGTAATGACAGTCTCTGAG............................................6911.001.001.00-----------------------------------------------------------
.........................................................................................................................................GACGATGATGAGGATGTTGG.............................................................................................2011.001.00-----------------------1.00------------------------------------
......................................................................................................................................AAGGACGATGATGAGAACA.................................................................................................191.000.00-----------------------------1.00------------------------------
...................................................................................................................................................................................TGAAACCGGGTAATGACAGTCTCTGAGC...........................................2811.001.00-------------------------1.00----------------------------------
......................................................................................................................................................ATGTTGGTACCTGCATCTGTAGGC............................................................................2411.001.00--------------------1.00---------------------------------------
...........................................................................................................................................................................................GGTAATGACAGTCTCTGAGC...........................................2011.001.00-----------------------------------------------------1.00------
....................................................................................................................................................................ATCTGTAGGCCTCCTGT.....................................................................171.000.00--1.00---------------------------------------------------------
........................................................................................................................................GGACGATGATGAGGATGTG...............................................................................................1911.005.00------1.00-----------------------------------------------------
....................................................................................................................................................................ATCTGTAGGCCTCCTTGAAACCGGGTAAT.........................................................2911.001.00----------------------------1.00-------------------------------
........................................................................................................................................GGACGATGATGAGGATGTTGGTACCT........................................................................................2611.001.00---------------------------------1.00--------------------------
........................................................................................................................................GGACGATGATGAGGATGTTGATA...........................................................................................2311.001.00--------1.00---------------------------------------------------
.........................................................................................................................................GACGATGATGAGGATGTTGGTAC..........................................................................................2311.001.00-------------------------------------------------1.00----------
................................................................................................................................................................CTGCATCTGTAGGCCTCCTTGAAACC................................................................2611.001.00------------------------1.00-----------------------------------
........................................................................................................................................GGACGATGATGAGGATGTTGGTAC..........................................................................................2411.001.00---------------------------1.00--------------------------------
.......................................................................................................................................AGGACGATGATGAGGATGT................................................................................................1911.001.00------1.00-----------------------------------------------------
.................................TGAGCTGGCCAGCGCGG........................................................................................................................................................................................................171.000.00----------------------------------------------------1.00-------
.....................................................................................................GAGACCCGAAGCTACTGAGTGACAG............................................................................................................................2511.001.00---------------------------------------1.00--------------------
......................................................................................................................AGTGACAGGGTTCCGGAAGGACG.............................................................................................................2311.001.00------------------------------------------1.00-----------------
........................................................................................................................................GGACGATGATGAGGATGTTGGTACA.........................................................................................2511.001.00-------------------1.00----------------------------------------
.......CTGCACTACGTGGGC....................................................................................................................................................................................................................................1511.001.00-------------------------------------1.00----------------------
........................................................................................................................................................................................................TCTGAGCTACTTCAAAAAG...............................1911.001.00-----------------------------------1.00------------------------
........................................................................................................................................GGACGATGATGAGGATGTTG..............................................................................................2011.001.00---1.00--------------------------------------------------------
.......................................................................................................................................AGGACGATGATGAGGACGA................................................................................................191.000.00-------------------------------1.00----------------------------
....................................................................................................................................................................................GAAACCGGGTAATGACAGTCT.................................................2111.001.00---------1.00--------------------------------------------------
........................................................................................................................................GGACGATGATGAGGATGTTGGGAA..........................................................................................2411.002.00-------------------1.00----------------------------------------
........................................................................................................................................GGACGATGATGAGGATGTTGGTACCTGCATCT..................................................................................3211.001.00-----1.00------------------------------------------------------
..............................................................CCTTGCAAGTGCCCTGCGACAGCCTCCC................................................................................................................................................................2811.001.00---------------------------------------------1.00--------------
..................................................................................................................................................................................TTGAAACCGGGTAATGACAGTCTCTGAGC...........................................2911.001.00----------------------------------1.00-------------------------
...........................................................................................................................................................................................GGTAATGACAGTCTCTGAGCTAC........................................2311.001.00--------------------------1.00---------------------------------
.....................................................................................................................................................GATGTTGGTACCTGCAT....................................................................................1711.001.00-----------------------------------------1.00------------------
.......................................................................................................................................AGGACGATGATGAGGAGG.................................................................................................181.000.00---------------1.00--------------------------------------------
...........................................................................................................................................................................GGCCTCCTTGAAACCGGGTAATGACA.....................................................2611.001.00-------------1.00----------------------------------------------
.....................................................................................................................................................................................AAACCGGGTAATGACAGTCTCTGAGCTA.........................................2811.001.00--------------------------------------------1.00---------------
........................................................................................................................................GGACGATGATGAGGATGTTGAAGA..........................................................................................2411.001.00------1.00-----------------------------------------------------
..................................................................................................................................................................................TTGAAACCGGGTAATGACAGTCTCTGAGCTA.........................................3111.001.00---------------------------------------------------------1.00--
............................................................................................................................................................................................GTAATGACAGTCTCTGAGC...........................................1911.001.00-----------------------------------------------1.00------------
.......................................................................................................................................................................................................................................TTAATTTACCTGAGATGAT1911.001.00---------1.00--------------------------------------------------
...........................................................................................................................................................................................................GAGCTACTTCAAAAAG...............................1630.330.33----------------------------------------------------------0.33-

Antisense strand
GGAGCTGCTGCACTACGTGGGCCAGCTGCGGGCTGAGCTGGCCAGCGCAGGTGGGTGGCCACCCTTGCAAGTGCCCTGCGACAGCCTCCCTGAGGACATGGGAGACCCGAAGCTACTGAGTGACAGGGTTCCGGAAGGACGATGATGAGGATGTTGGTACCTGCATCTGTAGGCCTCCTTGAAACCGGGTAATGACAGTCTCTGAGCTACTTCAAAAAGCCCAACAAATTATTAATTTACCTGAGATGAT
...................................................................................................................................((((((((.........((((((........)))))).......)))))....)))...............................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189784SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................CAGGGAGGCTGTCGCAGGG.............................................................................................................................................................. 1911.001.00--------------------1.00---------------------------------------
..................................................................................................................................................................................................TTTTTGAAGTAGCTCAGAGACTGT................................ 2411.001.00-------------------------------------------------------1.00----
..................................................................................................................................................................................TTGAAACCGGGTAATTCGA..................................................... 191.000.00-----------------1.00------------------------------------------
.....................................................................................................................................................................................................GTCTCTGAGCTACTTGCC................................... 181.000.00------------------------------1.00-----------------------------
..................................................................................................................................................................................TTGAAACCGGGTAATACTG..................................................... 191.000.00-----------------1.00------------------------------------------
........................................................................................................................................TCCTCATCATCGTCC................................................................................................... 1540.250.25-----------------------------------------------------------0.25