ID: uc003mhh.2
GENE: DOK3(1)
chr5:176932062-176932311-


(1)
AGO1.ip
(4)
AGO2.ip
(2)
AGO3.ip
(6)
B-CELL
(2)
BRAIN
(6)
BREAST
(22)
CELL-LINE
(1)
FIBROBLAST
(2)
HEART
(3)
HELA
(1)
KIDNEY
(4)
LIVER
(2)
OTHER
(17)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
GCCCAGCACTCTCAGTGGGGAGCCAGGTGGGAGAACAGGCTCGGAAGGGGACCTAGGCTTATGCAGCGAGCCGGGCAAAGCTGGAACTGGAGCCCAGGCCCCTGGATGCCCCCTGGCTTGTGGAGTTCTGGGATACTGAGGGGAGGGGACAGGGCATGGGAGTGCGGTGCTCTCACCTTTGACTTGAACTCATTCCCCAGGGGACAGGGGAGGCCTCCTCAGGATCCACAGATGCCCAGTCTCCCAAGAG
................................................................................................................((((......((((((.((......((((.(((((.((...((((....)))).)).))))).))))...)).)))))).....))))..................................................
..............................................................................................................111......................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189783SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR189784SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
TAX577579(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577588(Rovira)
total RNA. (breast)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
TAX577741(Rovira)
total RNA. (breast)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCAGT.................................................24142.0014.004.001.002.004.001.002.003.00-2.002.00-1.003.00-1.002.001.001.00----1.00-1.00----1.00---1.00--1.00--------1.00-------1.00-1.001.00-1.00-1.00------1.00---
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAGT.................................................23116.0010.00-1.004.00-1.00-------1.00---1.001.00-------1.001.00-1.00----------1.00---1.00---1.00--1.00--------------------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCAG..................................................23114.0014.00-2.003.00---1.00----2.00---1.00--1.00---------------------------1.00-1.00---1.00-------------1.00----
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAG..................................................22110.0010.007.003.00---------------------------------------------------------------------
.....................................................................................................................................................................................................CAGGGGACAGGGGAGGGCTA.................................208.000.00-------3.00---------------1.00------1.00---------1.00-1.00--------1.00-------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAGA.................................................2318.0010.00----1.00--1.00-1.00-1.00--1.00---1.00--------1.00-------------------------------1.00-----------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAGAA................................................2415.0010.00-------------2.001.00----2.00---------------------------------------------------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCAGA.................................................2415.0014.00---1.00----------------1.00-------------------------------------------1.001.00--1.00--
.....................................................................................................................................................................................................CAGGGGACAGGGGAGGGC...................................184.000.00----1.00--------------------------1.00------------------------------1.001.00-------
..............................GAGAACAGGCTCGGAAG...........................................................................................................................................................................................................1714.004.00----------4.00------------------------------------------------------------
......................................GCTCGGAAGGGGACCTAGGCTTATGCA.........................................................................................................................................................................................2713.003.00--------3.00--------------------------------------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAGTA................................................2412.0010.00---1.00-----1.00-------------------------------------------------------------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCAT..................................................2312.001.00--------------------------------------------1.00---------1.00----------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAGG.................................................2312.002.00-1.001.00--------------------------------------------------------------------
............................................................................................................................................................................TCACCTTTGACTTGATCC............................................................182.000.002.00----------------------------------------------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAA..................................................2211.001.00------1.00----------------------------------------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAAG.................................................2311.001.00---1.00-------------------------------------------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCA...................................................2111.001.00-----------------------------------1.00-----------------------------------
.....................................................................................................................................................................................................CAGGGGACAGGGGAGGCCTA.................................201.000.00----1.00------------------------------------------------------------------
..................................................................................................................................................................TGCGGTGCTCTCACCGCCG.....................................................................191.000.00---------------------------------------------------------1.00-------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAGAGT...............................................2511.0010.00--1.00--------------------------------------------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCC....................................................2011.001.00----1.00------------------------------------------------------------------
...................................................................................................................GCTTGTGGAGTTCTGCGG.....................................................................................................................181.000.00--------------------------------1.00--------------------------------------
.................................................................................................................................................................GTGCGGTGCTCTCACATTA......................................................................191.000.00-1.00---------------------------------------------------------------------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCAGAAC...............................................2611.0014.00-----------------------------------------1.00-----------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAAT.................................................2311.001.00-1.00---------------------------------------------------------------------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCA...................................................2211.001.00----------------1.00------------------------------------------------------
.........................................................................................................................................GAGGGGAGGGGACAGGGCAGGGG..........................................................................................231.000.00-------1.00---------------------------------------------------------------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCC....................................................2111.001.00--------------------------------------1.00--------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAGTAG...............................................2511.0010.00---------------------1.00-------------------------------------------------
..........................................................................................................................................AGGGGAGGGGACAGGGCATGGG..........................................................................................2211.001.00-------------1.00---------------------------------------------------------
.................................................................................................................................................GGGACAGGGCATGGGAGGCAG....................................................................................211.000.00-1.00---------------------------------------------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCAT..................................................2211.001.00---------------------1.00-------------------------------------------------
...................................................................................................................................................................................TGACTTGAACTCATTCCCCAGAGAA..............................................251.000.00----------------------------------1.00------------------------------------
..................................................................................................................................................................................TTGACTTGAACTCATTCCCCATT.................................................2311.001.00-1.00---------------------------------------------------------------------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCAA..................................................2311.001.00--------------------1.00--------------------------------------------------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCAGC.................................................2411.0014.00-----1.00-----------------------------------------------------------------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCCAGTA................................................2511.0014.00-------------------------------------1.00---------------------------------
.................................................................................................................................................................................TTTGACTTGAACTCATTCCCTAA..................................................231.000.00-----1.00-----------------------------------------------------------------
.....................................................................................................................................................................................................CAGGGGACAGGGGAGGC....................................1760.670.67---------------------------------------------------------------------0.500.17

Antisense strand
GCCCAGCACTCTCAGTGGGGAGCCAGGTGGGAGAACAGGCTCGGAAGGGGACCTAGGCTTATGCAGCGAGCCGGGCAAAGCTGGAACTGGAGCCCAGGCCCCTGGATGCCCCCTGGCTTGTGGAGTTCTGGGATACTGAGGGGAGGGGACAGGGCATGGGAGTGCGGTGCTCTCACCTTTGACTTGAACTCATTCCCCAGGGGACAGGGGAGGCCTCCTCAGGATCCACAGATGCCCAGTCTCCCAAGAG
................................................................................................................((((......((((((.((......((((.(((((.((...((((....)))).)).))))).))))...)).)))))).....))))..................................................
..............................................................................................................111......................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189783SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR189784SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
TAX577579(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577588(Rovira)
total RNA. (breast)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
TAX577741(Rovira)
total RNA. (breast)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
............................GGGAGAACAGGCTCGGATCTT......................................................................................................................................................................................................... 211.000.00-----1.00-----------------------------------------------------------------
..........................................................................................................................GAGTTCTGGGATACTGTG.............................................................................................................. 181.000.00-------------------------------------------------------------1.00---------
.........................................................................................................................................................................................GAACTCATTCCCCAGTGAT.............................................. 191.000.00-------------------------------------------------1.00---------------------