uc003mdn.2_intron_14_0_chr5_175602216

TGGAAGAATTCATATATGAATCAGATGAGAATGCCCCAGGACCATCGTAGGTCAGGCCACCTGCTTTTGTCAAAGAAAAAAGATAACCCCTATTTGAATTAAAATATGAGAATCTGACCATATGTATCATAGGTGACTTACACAGTGTCCTTGGTAAGGAGAATTTAGAGTGAGAGTCTGTTCCCCACTGAGGTTTGATTTAAGATGGCAGAAGAAAATGACATCATCAGCCACTCAGCAGCTTGATTCT ..........................................................................................(((((......)))))..........(((.((((...)))))))(((((.((((((.((((.....))))..)))....))).)))))........................................................................ .........................................................................................90.......................................................................................179.....................................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR553576(SRX182782) source: Testis. (testes)	SRR037942(GSM510480) 293DroshaTN_cand5. (cell line)	SRR189783	SRR037937(GSM510475) 293cand2. (cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver)
..........................................................................................................TGAGAATCTGACCATATGTATCATAGG.....................................................................................................................	27	1	29.00	29.00	29.00	-	-	-	-	-	-
............................................................................................................................................................................................TGAGGTTTGATTTAAGATGGCAGAAGA...................................	27	1	10.00	10.00	10.00	-	-	-	-	-	-
..............................................................................................TGAATTAAAATATGAGAATCTGACC...................................................................................................................................	25	1	6.00	6.00	6.00	-	-	-	-	-	-
..............TATGAATCAGATGAGAATGCCCCAGG..................................................................................................................................................................................................................	26	1	6.00	6.00	6.00	-	-	-	-	-	-
............................................................................................TTTGAATTAAAATATGAGAATCTGACC...................................................................................................................................	27	1	6.00	6.00	6.00	-	-	-	-	-	-
............................................................................................................................................................................................TGAGGTTTGATTTAAGATGGCAGAAG....................................	26	1	5.00	5.00	5.00	-	-	-	-	-	-
.............................................................................................TTGAATTAAAATATGAGAATCTGACC...................................................................................................................................	26	1	5.00	5.00	5.00	-	-	-	-	-	-
..............................................................................................TGAATTAAAATATGAGAATCTGACCAT.................................................................................................................................	27	1	4.00	4.00	4.00	-	-	-	-	-	-
............TATATGAATCAGATGAGAATGCCCC.....................................................................................................................................................................................................................	25	1	3.00	3.00	3.00	-	-	-	-	-	-
......................................................................................................................................................TTGGTAAGGAGAATTTAGAGTGAGA...........................................................................	25	1	3.00	3.00	3.00	-	-	-	-	-	-
.......................................................................................................................................................TGGTAAGGAGAATTTAGAGTGAGAGTC........................................................................	27	1	3.00	3.00	3.00	-	-	-	-	-	-
........................................................................................................TATGAGAATCTGACCATATGTATCATA.......................................................................................................................	27	1	3.00	3.00	3.00	-	-	-	-	-	-
..............................................................................................TGAATTAAAATATGAGAATCTGACCA..................................................................................................................................	26	1	2.00	2.00	2.00	-	-	-	-	-	-
..........................................................................................TATTTGAATTAAAATATGAGAATCTGACC...................................................................................................................................	29	1	2.00	2.00	2.00	-	-	-	-	-	-
..............TATGAATCAGATGAGAATGCCCC.....................................................................................................................................................................................................................	23	1	2.00	2.00	2.00	-	-	-	-	-	-
..........................................................................................................................................................TAAGGAGAATTTAGAGTGAGAGTCTGT.....................................................................	27	1	2.00	2.00	2.00	-	-	-	-	-	-
.........................................................................................................................................................................................CACTGAGGTTTGATTTAAGATGGCA........................................	25	1	2.00	2.00	2.00	-	-	-	-	-	-
......................................................................................................................................................TTGGTAAGGAGAATTTAGAGTGAGAGTC........................................................................	28	1	1.00	1.00	1.00	-	-	-	-	-	-
........................................................................................................................................................................................................................AATGACATCATCAGCCCCG...............	19		1.00	0.00	-	-	1.00	-	-	-	-
............................................................................................................................................................................................TGAGGTTTGATTTAAGATGGCAGAA.....................................	25	1	1.00	1.00	1.00	-	-	-	-	-	-
......................................................................................................................................................TTGGTAAGGAGAATTTAGAGTGAG............................................................................	24	1	1.00	1.00	1.00	-	-	-	-	-	-
.................................................................................................................................................................................................TTTGATTTAAGATGGCAGAAGAAAAT...............................	26	1	1.00	1.00	1.00	-	-	-	-	-	-
................................................................................................................TCTGACCATATGTATCATAACTT...................................................................................................................	23		1.00	0.00	1.00	-	-	-	-	-	-
......................................................................................................................................................TTGGTAAGGAGAATTTAGAGTGAGAGT.........................................................................	27	1	1.00	1.00	1.00	-	-	-	-	-	-
.................................................................................................................................................................................................TTTGATTTAAGATGGCAGAAGAAAATGAC............................	29	1	1.00	1.00	1.00	-	-	-	-	-	-
...................................................................................................................................................................................................TGATTTAAGATGGCAGAAGAAAA................................	23	1	1.00	1.00	1.00	-	-	-	-	-	-
............TATATGAATCAGATGAGAATGCCCCA....................................................................................................................................................................................................................	26	1	1.00	1.00	1.00	-	-	-	-	-	-
............................................................................................................................................................................................TGAGGTTTGATTTAAGATGGCAGGAG....................................	26		1.00	0.00	1.00	-	-	-	-	-	-
............................................................................................................AGAATCTGACCATATGTATCATAGG.....................................................................................................................	25	1	1.00	1.00	1.00	-	-	-	-	-	-
................TGAATCAGATGAGAATGCCCCAGGAC................................................................................................................................................................................................................	26	1	1.00	1.00	1.00	-	-	-	-	-	-
...................................................................................................................................................................................................TGATTTAAGATGGCAGAAGAAAATGA.............................	26	1	1.00	1.00	1.00	-	-	-	-	-	-
..........................................................................................................TGAGAATCTGACCATATGTATCATAGGT....................................................................................................................	28	1	1.00	1.00	1.00	-	-	-	-	-	-
..........................................................................................TATTTGAATTAAAATATGAGAATCTGA.....................................................................................................................................	27	1	1.00	1.00	1.00	-	-	-	-	-	-
................TGAATCAGATGAGAATGCCCCAGGA.................................................................................................................................................................................................................	25	1	1.00	1.00	1.00	-	-	-	-	-	-
................TGAATCAGATGAGAATGCCCCAGGACC...............................................................................................................................................................................................................	27	1	1.00	1.00	1.00	-	-	-	-	-	-
............TATATGAATCAGATGAGAATGCCCCAGGA.................................................................................................................................................................................................................	29	1	1.00	1.00	1.00	-	-	-	-	-	-
...................................................................................................................................................................................................TGATTTAAGATGGCAGAAGAAAAT...............................	24	1	1.00	1.00	1.00	-	-	-	-	-	-
..GAAGAATTCATATATGAATCAGATGAGAATGC........................................................................................................................................................................................................................	32	1	1.00	1.00	1.00	-	-	-	-	-	-
........................................................................................................TATGAGAATCTGACCATATGTATC..........................................................................................................................	24	1	1.00	1.00	1.00	-	-	-	-	-	-
..........................................................................................................TGAGAATCTGACCATATGTATCATAG......................................................................................................................	26	1	1.00	1.00	1.00	-	-	-	-	-	-
.......................................................................................................................................ACTTACACAGTGTCCTTGGTAAGGAGA........................................................................................	27	1	1.00	1.00	1.00	-	-	-	-	-	-
...............................................TAGGTCAGGCCACCTGCTTTGTC....................................................................................................................................................................................	23		1.00	0.00	-	-	-	-	1.00	-	-
.................................................................................................................................................................................................TTTGATTTAAGATGGCAGAAGAAAA................................	25	1	1.00	1.00	1.00	-	-	-	-	-	-
........................................................................................................................TATGTATCATAGGTGACTTACACAGT........................................................................................................	26	1	1.00	1.00	1.00	-	-	-	-	-	-
........................................................................................................................TATGTATCATAGGTGACTTACACAGTG.......................................................................................................	27	1	1.00	1.00	1.00	-	-	-	-	-	-
........................................................................................................................................................................................................TAAGATGGCAGAAGAAAATGACATCATCAGC...................	31	1	1.00	1.00	1.00	-	-	-	-	-	-
........................................................................................................TATGAGAATCTGACCATATGTATCA.........................................................................................................................	25	1	1.00	1.00	1.00	-	-	-	-	-	-
...........................................................................................................................................................AAGGAGAATTTAGAGACT.............................................................................	18		1.00	0.00	-	-	-	-	-	-	1.00
.............................................................................................TTGAATTAAAATATGAGAATCTGAC....................................................................................................................................	25	1	1.00	1.00	1.00	-	-	-	-	-	-
..............TATGAATCAGATGAGAATGCCCCAGT..................................................................................................................................................................................................................	26		1.00	0.00	1.00	-	-	-	-	-	-
........................................................................................................TATGAGAATCTGACCATATGTATCAT........................................................................................................................	26	1	1.00	1.00	1.00	-	-	-	-	-	-
......................................................................................................................................................................................................TTTAAGATGGCAGAACCC..................................	18		1.00	0.00	-	-	-	1.00	-	-	-
..............TATGAATCAGATGAGAATGCCCCAGGACGGG.............................................................................................................................................................................................................	31		1.00	0.00	1.00	-	-	-	-	-	-

TGGAAGAATTCATATATGAATCAGATGAGAATGCCCCAGGACCATCGTAGGTCAGGCCACCTGCTTTTGTCAAAGAAAAAAGATAACCCCTATTTGAATTAAAATATGAGAATCTGACCATATGTATCATAGGTGACTTACACAGTGTCCTTGGTAAGGAGAATTTAGAGTGAGAGTCTGTTCCCCACTGAGGTTTGATTTAAGATGGCAGAAGAAAATGACATCATCAGCCACTCAGCAGCTTGATTCT
..........................................................................................(((((......)))))..........(((.((((...)))))))(((((.((((((.((((.....))))..)))....))).)))))........................................................................
.........................................................................................90.......................................................................................179.....................................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR553576(SRX182782)
source: Testis. (testes)

SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)

SRR189783

SRR037937(GSM510475)
293cand2. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

..........................................................................................................TGAGAATCTGACCATATGTATCATAGG.....................................................................................................................

29.00

............................................................................................................................................................................................TGAGGTTTGATTTAAGATGGCAGAAGA...................................

10.00

..............................................................................................TGAATTAAAATATGAGAATCTGACC...................................................................................................................................

6.00

..............TATGAATCAGATGAGAATGCCCCAGG..................................................................................................................................................................................................................

6.00

............................................................................................TTTGAATTAAAATATGAGAATCTGACC...................................................................................................................................

6.00

5.00

.............................................................................................TTGAATTAAAATATGAGAATCTGACC...................................................................................................................................

5.00

..............................................................................................TGAATTAAAATATGAGAATCTGACCAT.................................................................................................................................

4.00

............TATATGAATCAGATGAGAATGCCCC.....................................................................................................................................................................................................................

3.00

......................................................................................................................................................TTGGTAAGGAGAATTTAGAGTGAGA...........................................................................

3.00

.......................................................................................................................................................TGGTAAGGAGAATTTAGAGTGAGAGTC........................................................................

3.00

........................................................................................................TATGAGAATCTGACCATATGTATCATA.......................................................................................................................

3.00

..............................................................................................TGAATTAAAATATGAGAATCTGACCA..................................................................................................................................

2.00

..........................................................................................TATTTGAATTAAAATATGAGAATCTGACC...................................................................................................................................

2.00

..............TATGAATCAGATGAGAATGCCCC.....................................................................................................................................................................................................................

2.00

..........................................................................................................................................................TAAGGAGAATTTAGAGTGAGAGTCTGT.....................................................................

2.00

.........................................................................................................................................................................................CACTGAGGTTTGATTTAAGATGGCA........................................

2.00

......................................................................................................................................................TTGGTAAGGAGAATTTAGAGTGAGAGTC........................................................................

1.00

........................................................................................................................................................................................................................AATGACATCATCAGCCCCG...............

1.00

0.00

1.00

......................................................................................................................................................TTGGTAAGGAGAATTTAGAGTGAG............................................................................

1.00

.................................................................................................................................................................................................TTTGATTTAAGATGGCAGAAGAAAAT...............................

1.00

................................................................................................................TCTGACCATATGTATCATAACTT...................................................................................................................

1.00

0.00

1.00

......................................................................................................................................................TTGGTAAGGAGAATTTAGAGTGAGAGT.........................................................................

1.00

.................................................................................................................................................................................................TTTGATTTAAGATGGCAGAAGAAAATGAC............................

1.00

...................................................................................................................................................................................................TGATTTAAGATGGCAGAAGAAAA................................

1.00

............TATATGAATCAGATGAGAATGCCCCA....................................................................................................................................................................................................................

1.00

0.00

1.00

............................................................................................................AGAATCTGACCATATGTATCATAGG.....................................................................................................................

1.00

................TGAATCAGATGAGAATGCCCCAGGAC................................................................................................................................................................................................................

1.00

...................................................................................................................................................................................................TGATTTAAGATGGCAGAAGAAAATGA.............................

1.00

..........................................................................................................TGAGAATCTGACCATATGTATCATAGGT....................................................................................................................

1.00

..........................................................................................TATTTGAATTAAAATATGAGAATCTGA.....................................................................................................................................

1.00

................TGAATCAGATGAGAATGCCCCAGGA.................................................................................................................................................................................................................

1.00

................TGAATCAGATGAGAATGCCCCAGGACC...............................................................................................................................................................................................................

1.00

............TATATGAATCAGATGAGAATGCCCCAGGA.................................................................................................................................................................................................................

1.00

...................................................................................................................................................................................................TGATTTAAGATGGCAGAAGAAAAT...............................

1.00

..GAAGAATTCATATATGAATCAGATGAGAATGC........................................................................................................................................................................................................................

1.00

........................................................................................................TATGAGAATCTGACCATATGTATC..........................................................................................................................

1.00

..........................................................................................................TGAGAATCTGACCATATGTATCATAG......................................................................................................................

1.00

.......................................................................................................................................ACTTACACAGTGTCCTTGGTAAGGAGA........................................................................................

1.00

...............................................TAGGTCAGGCCACCTGCTTTGTC....................................................................................................................................................................................

1.00

0.00

1.00

.................................................................................................................................................................................................TTTGATTTAAGATGGCAGAAGAAAA................................

1.00

........................................................................................................................TATGTATCATAGGTGACTTACACAGT........................................................................................................

1.00

........................................................................................................................TATGTATCATAGGTGACTTACACAGTG.......................................................................................................

1.00

........................................................................................................................................................................................................TAAGATGGCAGAAGAAAATGACATCATCAGC...................

1.00

........................................................................................................TATGAGAATCTGACCATATGTATCA.........................................................................................................................

1.00

...........................................................................................................................................................AAGGAGAATTTAGAGACT.............................................................................

1.00

0.00

1.00

.............................................................................................TTGAATTAAAATATGAGAATCTGAC....................................................................................................................................

1.00

..............TATGAATCAGATGAGAATGCCCCAGT..................................................................................................................................................................................................................

1.00

0.00

1.00

........................................................................................................TATGAGAATCTGACCATATGTATCAT........................................................................................................................

1.00

......................................................................................................................................................................................................TTTAAGATGGCAGAACCC..................................

1.00

0.00

1.00

..............TATGAATCAGATGAGAATGCCCCAGGACGGG.............................................................................................................................................................................................................

1.00

0.00

1.00